RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 NISCHQ9Y2I1 1504 aa32.59■■■□□ 2.81
CLK3-218ENST00000566926 CCDC180Q9P1Z9 1646 aa29.09■■■□□ 2.25
CLK3-218ENST00000566926 ABCC9O60706 1549 aa28.46■■■□□ 2.15
CLK3-218ENST00000566926 RB1CC1Q8TDY2 1594 aa27.42■■□□□ 1.98
CLK3-218ENST00000566926 NACADO15069 1562 aa27.36■■□□□ 1.97
CLK3-218ENST00000566926 DCAF8L2P0C7V8 631 aa27.28■■□□□ 1.96
CLK3-218ENST00000566926 MYO15BQ96JP2 1530 aa27.16■■□□□ 1.94
CLK3-218ENST00000566926 ZCCHC6Q5VYS8 1495 aaKnown RBP27.11■■□□□ 1.93
CLK3-218ENST00000566926 DCAF1Q9Y4B6 1507 aa27■■□□□ 1.91
CLK3-218ENST00000566926 UNC13AQ9UPW8 1703 aa26.81■■□□□ 1.88
CLK3-218ENST00000566926 PABPN1Q86U42 306 aaKnown RBP eCLIP26.56■■□□□ 1.847e-7■□□□□ 10.4
CLK3-218ENST00000566926 BICRAQ9NZM4 1560 aa26.51■■□□□ 1.83
CLK3-218ENST00000566926 SCRIBQ14160 1630 aa26.46■■□□□ 1.83
CLK3-218ENST00000566926 SHROOM4Q9ULL8 1493 aa26.32■■□□□ 1.8
CLK3-218ENST00000566926 DNAJC5BQ9UF47 199 aa26.15■■□□□ 1.78
CLK3-218ENST00000566926 EIF4G1Q04637 1599 aaKnown RBP25.86■■□□□ 1.73
CLK3-218ENST00000566926 CC2D2AQ9P2K1 1620 aa25.77■■□□□ 1.72
CLK3-218ENST00000566926 CECR2Q9BXF3 1484 aa25.6■■□□□ 1.69
CLK3-218ENST00000566926 SMARCA4P51532 1647 aa25.33■■□□□ 1.65
CLK3-218ENST00000566926 BAZ1AQ9NRL2 1556 aaPredicted RBP25.31■■□□□ 1.64
CLK3-218ENST00000566926 SMARCA2P51531 1590 aa25.22■■□□□ 1.63
CLK3-218ENST00000566926 NCAPD3P42695 1498 aa25.21■■□□□ 1.63
CLK3-218ENST00000566926 ATAD2BQ9ULI0 1458 aa25.18■■□□□ 1.62
CLK3-218ENST00000566926 HMGXB3Q12766 1538 aa25.09■■□□□ 1.61
CLK3-218ENST00000566926 MROH2BQ7Z745 1585 aa25.08■■□□□ 1.61
CLK3-218ENST00000566926 PEG3Q9GZU2 1588 aa25.08■■□□□ 1.61
CLK3-218ENST00000566926 BAZ1BQ9UIG0 1483 aaKnown RBP25■■□□□ 1.59
CLK3-218ENST00000566926 WIZO95785 1651 aa24.84■■□□□ 1.57
CLK3-218ENST00000566926 RSF1Q96T23 1441 aaPredicted RBP24.77■■□□□ 1.56
CLK3-218ENST00000566926 LAMC3Q9Y6N6 1575 aa24.6■■□□□ 1.53
CLK3-218ENST00000566926 ERCC6Q03468 1493 aa24.6■■□□□ 1.53
CLK3-218ENST00000566926 TOP2AP11388 1531 aaKnown RBP24.58■■□□□ 1.53
CLK3-218ENST00000566926 NESP48681 1621 aa24.57■■□□□ 1.52
CLK3-218ENST00000566926 CADPSQ9ULU8 1353 aa24.47■■□□□ 1.51
CLK3-218ENST00000566926 PDS5BQ9NTI5 1447 aa24.44■■□□□ 1.5
CLK3-218ENST00000566926 CUX2O14529 1486 aa24.38■■□□□ 1.49
CLK3-218ENST00000566926 KIF21AQ7Z4S6 1674 aa24.37■■□□□ 1.49
CLK3-218ENST00000566926 CFTRP13569 1480 aa24.29■■□□□ 1.48
CLK3-218ENST00000566926 THOC2Q8NI27 1593 aaKnown RBP24.27■■□□□ 1.48
CLK3-218ENST00000566926 CCDC88BA6NC98 1476 aa24.26■■□□□ 1.47
CLK3-218ENST00000566926 PRDM2Q13029 1718 aa24.22■■□□□ 1.47
CLK3-218ENST00000566926 CEP164Q9UPV0 1460 aa24.19■■□□□ 1.46
CLK3-218ENST00000566926 FANCD2Q9BXW9 1451 aa24.18■■□□□ 1.46
CLK3-218ENST00000566926 MRC2Q9UBG0 1479 aa24.16■■□□□ 1.46
CLK3-218ENST00000566926 WDR62O43379 1518 aa24.07■■□□□ 1.44
CLK3-218ENST00000566926 SUPT5HO00267 1087 aaKnown RBP24.07■■□□□ 1.44
CLK3-218ENST00000566926 URB2Q14146 1524 aaKnown RBP23.91■■□□□ 1.42
CLK3-218ENST00000566926 ABCC8Q09428 1581 aa23.86■■□□□ 1.41
CLK3-218ENST00000566926 TOPBP1Q92547 1522 aa23.78■■□□□ 1.4
CLK3-218ENST00000566926 DNMBPQ6XZF7 1577 aa23.78■■□□□ 1.4
CLK3-218ENST00000566926 DNAJC5Q9H3Z4 198 aa23.72■■□□□ 1.39
CLK3-218ENST00000566926 IFT140Q96RY7 1462 aa23.68■■□□□ 1.38
CLK3-218ENST00000566926 POLA1P09884 1462 aaPredicted RBP23.56■■□□□ 1.36
CLK3-218ENST00000566926 CUX1P39880 1505 aa23.54■■□□□ 1.36
CLK3-218ENST00000566926 TARBP1Q13395 1621 aaKnown RBP23.54■■□□□ 1.36
CLK3-218ENST00000566926 ZNF608Q9ULD9 1512 aaPredicted RBP23.51■■□□□ 1.35
CLK3-218ENST00000566926 FGD5Q6ZNL6 1462 aa23.49■■□□□ 1.35
CLK3-218ENST00000566926 SOGA1O94964 1423 aa23.49■■□□□ 1.35
CLK3-218ENST00000566926 EIF4G3O43432 1585 aaKnown RBP23.47■■□□□ 1.35
CLK3-218ENST00000566926 RAD54L2Q9Y4B4 1467 aa23.43■■□□□ 1.34
CLK3-218ENST00000566926 WDR97A6NE52 1622 aa23.42■■□□□ 1.34
CLK3-218ENST00000566926 WRNQ14191 1432 aaPredicted RBP eCLIP23.39■■□□□ 1.33
CLK3-218ENST00000566926 AQRO60306 1485 aaKnown RBP eCLIP23.38■■□□□ 1.331e-7■■■■■ 52.9
CLK3-218ENST00000566926 BIVM-ERCC5R4GMW8 1640 aa23.37■■□□□ 1.33
CLK3-218ENST00000566926 OSCARQ8IYS5 282 aa23.36■■□□□ 1.33
CLK3-218ENST00000566926 TOP2BQ02880 1626 aa23.36■■□□□ 1.33
CLK3-218ENST00000566926 TDRD9Q8NDG6 1382 aaKnown RBP23.33■■□□□ 1.33
CLK3-218ENST00000566926 SYNJ1O43426 1573 aa23.3■■□□□ 1.32
CLK3-218ENST00000566926 ABCA10Q8WWZ4 1543 aa23.28■■□□□ 1.32
CLK3-218ENST00000566926 CHD1O14646 1710 aa23.24■■□□□ 1.31
CLK3-218ENST00000566926 GRIN2BQ13224 1484 aa23.24■■□□□ 1.31
CLK3-218ENST00000566926 GAPVD1Q14C86 1478 aa23.22■■□□□ 1.31
CLK3-218ENST00000566926 PBRM1Q86U86 1689 aa23.22■■□□□ 1.31
CLK3-218ENST00000566926 MAGI1Q96QZ7 1491 aaPredicted RBP23.2■■□□□ 1.3
CLK3-218ENST00000566926 ABCA5Q8WWZ7 1642 aa23.19■■□□□ 1.3
CLK3-218ENST00000566926 SNAPC4Q5SXM2 1469 aa23.18■■□□□ 1.3
CLK3-218ENST00000566926 FBLN2P98095 1184 aa23.17■■□□□ 1.3
CLK3-218ENST00000566926 CHMP7Q8WUX9 453 aaPredicted RBP23.11■■□□□ 1.29
CLK3-218ENST00000566926 SYNJ2O15056 1496 aa23.09■■□□□ 1.29
CLK3-218ENST00000566926 ERICH3Q5RHP9 1530 aa23.03■■□□□ 1.28
CLK3-218ENST00000566926 ADAMTS12P58397 1594 aa22.97■■□□□ 1.27
CLK3-218ENST00000566926 RIMBP3CA6NJZ7 1639 aa22.97■■□□□ 1.27
CLK3-218ENST00000566926 RIMBP3BA6NNM3 1639 aa22.97■■□□□ 1.27
CLK3-218ENST00000566926 RIMBP3Q9UFD9 1639 aa22.97■■□□□ 1.27
CLK3-218ENST00000566926 FHAD1B1AJZ9 1412 aa22.95■■□□□ 1.26
CLK3-218ENST00000566926 ARHGEF11O15085 1522 aa22.93■■□□□ 1.26
CLK3-218ENST00000566926 KIF27Q86VH2 1401 aa22.93■■□□□ 1.26
CLK3-218ENST00000566926 CLASP1Q7Z460 1538 aa22.92■■□□□ 1.26
CLK3-218ENST00000566926 GRIN2AQ12879 1464 aa22.92■■□□□ 1.26
CLK3-218ENST00000566926 TRIM41Q8WV44 630 aa22.88■■□□□ 1.25
CLK3-218ENST00000566926 CUL7Q14999 1698 aa22.83■■□□□ 1.24
CLK3-218ENST00000566926 NUP160Q12769 1436 aa22.82■■□□□ 1.24
CLK3-218ENST00000566926 IGF1RP08069 1367 aa22.8■■□□□ 1.24
CLK3-218ENST00000566926 CEP170Q5SW79 1584 aa22.79■■□□□ 1.24
CLK3-218ENST00000566926 CYB5RLQ6IPT4 315 aa22.74■■□□□ 1.23
CLK3-218ENST00000566926 ARAP1Q96P48 1450 aa22.73■■□□□ 1.23
CLK3-218ENST00000566926 CARMIL1Q5VZK9 1371 aa22.7■■□□□ 1.22
CLK3-218ENST00000566926 SHROOM2Q13796 1616 aa22.68■■□□□ 1.22
CLK3-218ENST00000566926 RUSC2Q8N2Y8 1516 aa22.63■■□□□ 1.21
CLK3-218ENST00000566926 JPH4Q96JJ6 628 aa22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 170.6 ms