RNA–Protein interactions for RNA: ENST00000559728.1

HMG20A-209, Transcript of high mobility group 20A, humanhuman

TSL 2

Gene HMG20A, Length 981 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMG20A-209ENST00000559728 AEBP2Q6ZN18 517 aaPredicted RBP21.9■■□□□ 1.1
HMG20A-209ENST00000559728 NISCHQ9Y2I1 1504 aa21.78■■□□□ 1.08
HMG20A-209ENST00000559728 CHIC1Q5VXU3 224 aa21.36■■□□□ 1.01
HMG20A-209ENST00000559728 CCDC180Q9P1Z9 1646 aa19.17■□□□□ 0.66
HMG20A-209ENST00000559728 PHF23Q9BUL5 403 aaPredicted RBP18.8■□□□□ 0.6
HMG20A-209ENST00000559728 ABCC9O60706 1549 aa18.65■□□□□ 0.58
HMG20A-209ENST00000559728 SENP3Q9H4L4 574 aaPredicted RBP18.56■□□□□ 0.56
HMG20A-209ENST00000559728 ZCCHC6Q5VYS8 1495 aaKnown RBP18.2■□□□□ 0.5
HMG20A-209ENST00000559728 DCAF8L2P0C7V8 631 aa18.04■□□□□ 0.48
HMG20A-209ENST00000559728 MYO15BQ96JP2 1530 aa18.03■□□□□ 0.48
HMG20A-209ENST00000559728 DCAF1Q9Y4B6 1507 aa18.03■□□□□ 0.48
HMG20A-209ENST00000559728 NACADO15069 1562 aa18.02■□□□□ 0.48
HMG20A-209ENST00000559728 RB1CC1Q8TDY2 1594 aa17.96■□□□□ 0.46
HMG20A-209ENST00000559728 SCRIBQ14160 1630 aa17.54■□□□□ 0.4
HMG20A-209ENST00000559728 UNC13AQ9UPW8 1703 aa17.52■□□□□ 0.4
HMG20A-209ENST00000559728 BICRAQ9NZM4 1560 aa17.52■□□□□ 0.39
HMG20A-209ENST00000559728 PABPN1Q86U42 306 aaKnown RBP eCLIP17.51■□□□□ 0.39
HMG20A-209ENST00000559728 PLPPR3Q6T4P5 718 aa17.35■□□□□ 0.37
HMG20A-209ENST00000559728 SHROOM4Q9ULL8 1493 aa17.31■□□□□ 0.36
HMG20A-209ENST00000559728 FOXD1Q16676 465 aa17.25■□□□□ 0.35
HMG20A-209ENST00000559728 DNAJC5BQ9UF47 199 aa17.07■□□□□ 0.32
HMG20A-209ENST00000559728 CECR2Q9BXF3 1484 aa17■□□□□ 0.31
HMG20A-209ENST00000559728 EIF4G1Q04637 1599 aaKnown RBP16.99■□□□□ 0.31
HMG20A-209ENST00000559728 CC2D2AQ9P2K1 1620 aa16.85■□□□□ 0.29
HMG20A-209ENST00000559728 BAZ1AQ9NRL2 1556 aaPredicted RBP16.82■□□□□ 0.28
HMG20A-209ENST00000559728 SMARCA4P51532 1647 aa16.81■□□□□ 0.28
HMG20A-209ENST00000559728 MROH2BQ7Z745 1585 aa16.81■□□□□ 0.28
HMG20A-209ENST00000559728 ATAD2BQ9ULI0 1458 aa16.73■□□□□ 0.27
HMG20A-209ENST00000559728 RSF1Q96T23 1441 aaPredicted RBP16.71■□□□□ 0.27
HMG20A-209ENST00000559728 NCAPD3P42695 1498 aa16.7■□□□□ 0.26
HMG20A-209ENST00000559728 PEG3Q9GZU2 1588 aa16.69■□□□□ 0.26
HMG20A-209ENST00000559728 ADRA2BP18089 450 aa16.64■□□□□ 0.25
HMG20A-209ENST00000559728 SMARCA2P51531 1590 aa16.63■□□□□ 0.25
HMG20A-209ENST00000559728 PPP6R1Q9UPN7 881 aa16.61■□□□□ 0.25
HMG20A-209ENST00000559728 WIZO95785 1651 aa16.59■□□□□ 0.25
HMG20A-209ENST00000559728 HMGXB3Q12766 1538 aa16.58■□□□□ 0.24
HMG20A-209ENST00000559728 BAZ1BQ9UIG0 1483 aaKnown RBP16.54■□□□□ 0.24
HMG20A-209ENST00000559728 TOP2AP11388 1531 aaKnown RBP16.43■□□□□ 0.22
HMG20A-209ENST00000559728 SUPT5HO00267 1087 aaKnown RBP16.36■□□□□ 0.21
HMG20A-209ENST00000559728 PIAS4Q8N2W9 510 aaPredicted RBP16.32■□□□□ 0.2
HMG20A-209ENST00000559728 CCDC88BA6NC98 1476 aa16.28■□□□□ 0.2
HMG20A-209ENST00000559728 NESP48681 1621 aa16.23■□□□□ 0.19
HMG20A-209ENST00000559728 CADPSQ9ULU8 1353 aa16.21■□□□□ 0.19
HMG20A-209ENST00000559728 CFTRP13569 1480 aa16.16■□□□□ 0.18
HMG20A-209ENST00000559728 LAMC3Q9Y6N6 1575 aa16.13■□□□□ 0.17
HMG20A-209ENST00000559728 PDS5BQ9NTI5 1447 aa16.03■□□□□ 0.16
HMG20A-209ENST00000559728 FANCD2Q9BXW9 1451 aa15.99■□□□□ 0.15
HMG20A-209ENST00000559728 ERCC6Q03468 1493 aa15.98■□□□□ 0.15
HMG20A-209ENST00000559728 KIF21AQ7Z4S6 1674 aa15.93■□□□□ 0.14
HMG20A-209ENST00000559728 CEP164Q9UPV0 1460 aa15.92■□□□□ 0.14
HMG20A-209ENST00000559728 THOC2Q8NI27 1593 aaKnown RBP15.9■□□□□ 0.14
HMG20A-209ENST00000559728 MSH5O43196 834 aa15.88■□□□□ 0.13
HMG20A-209ENST00000559728 MRC2Q9UBG0 1479 aa15.88■□□□□ 0.13
HMG20A-209ENST00000559728 PRDM2Q13029 1718 aa15.86■□□□□ 0.13
HMG20A-209ENST00000559728 URB2Q14146 1524 aaKnown RBP15.86■□□□□ 0.13
HMG20A-209ENST00000559728 WDR62O43379 1518 aa15.84■□□□□ 0.13
HMG20A-209ENST00000559728 CUX2O14529 1486 aa15.78■□□□□ 0.12
HMG20A-209ENST00000559728 TOPBP1Q92547 1522 aa15.77■□□□□ 0.11
HMG20A-209ENST00000559728 CUX1P39880 1505 aa15.75■□□□□ 0.11
HMG20A-209ENST00000559728 DNMBPQ6XZF7 1577 aa15.73■□□□□ 0.11
HMG20A-209ENST00000559728 ABCC8Q09428 1581 aa15.71■□□□□ 0.11
HMG20A-209ENST00000559728 WRNQ14191 1432 aaPredicted RBP eCLIP15.69■□□□□ 0.1
HMG20A-209ENST00000559728 SYNJ1O43426 1573 aa15.66■□□□□ 0.1
HMG20A-209ENST00000559728 POLA1P09884 1462 aaPredicted RBP15.66■□□□□ 0.1
HMG20A-209ENST00000559728 FGD5Q6ZNL6 1462 aa15.64■□□□□ 0.09
HMG20A-209ENST00000559728 TOP2BQ02880 1626 aa15.62■□□□□ 0.09
HMG20A-209ENST00000559728 RAD54L2Q9Y4B4 1467 aa15.61■□□□□ 0.09
HMG20A-209ENST00000559728 IFT140Q96RY7 1462 aa15.6■□□□□ 0.09
HMG20A-209ENST00000559728 BIVM-ERCC5R4GMW8 1640 aa15.6■□□□□ 0.09
HMG20A-209ENST00000559728 SOGA1O94964 1423 aa15.59■□□□□ 0.09
HMG20A-209ENST00000559728 ZNF608Q9ULD9 1512 aaPredicted RBP15.58■□□□□ 0.08
HMG20A-209ENST00000559728 TARBP1Q13395 1621 aaKnown RBP15.57■□□□□ 0.08
HMG20A-209ENST00000559728 TDRD9Q8NDG6 1382 aaKnown RBP15.5■□□□□ 0.07
HMG20A-209ENST00000559728 ABCA10Q8WWZ4 1543 aa15.5■□□□□ 0.07
HMG20A-209ENST00000559728 AQRO60306 1485 aaKnown RBP eCLIP15.5■□□□□ 0.073e-6■■■■■ 29.5
HMG20A-209ENST00000559728 WDR97A6NE52 1622 aa15.46■□□□□ 0.06
HMG20A-209ENST00000559728 EIF4G3O43432 1585 aaKnown RBP15.44■□□□□ 0.06
HMG20A-209ENST00000559728 TRIM41Q8WV44 630 aa15.43■□□□□ 0.06
HMG20A-209ENST00000559728 ABCA5Q8WWZ7 1642 aa15.4■□□□□ 0.06
HMG20A-209ENST00000559728 GAPVD1Q14C86 1478 aa15.4■□□□□ 0.06
HMG20A-209ENST00000559728 GRIN2BQ13224 1484 aa15.36■□□□□ 0.05
HMG20A-209ENST00000559728 RUSC2Q8N2Y8 1516 aa15.35■□□□□ 0.05
HMG20A-209ENST00000559728 SNAPC4Q5SXM2 1469 aa15.33■□□□□ 0.05
HMG20A-209ENST00000559728 PPP4R3CPQ6ZMV5 832 aa15.33■□□□□ 0.04
HMG20A-209ENST00000559728 IGF1RP08069 1367 aa15.33■□□□□ 0.04
HMG20A-209ENST00000559728 KIF27Q86VH2 1401 aa15.33■□□□□ 0.04
HMG20A-209ENST00000559728 ERICH3Q5RHP9 1530 aa15.29■□□□□ 0.04
HMG20A-209ENST00000559728 MAGI1Q96QZ7 1491 aaPredicted RBP15.29■□□□□ 0.04
HMG20A-209ENST00000559728 PBRM1Q86U86 1689 aa15.26■□□□□ 0.03
HMG20A-209ENST00000559728 SYNJ2O15056 1496 aa15.24■□□□□ 0.03
HMG20A-209ENST00000559728 FHAD1B1AJZ9 1412 aa15.24■□□□□ 0.03
HMG20A-209ENST00000559728 ADAMTS12P58397 1594 aa15.24■□□□□ 0.03
HMG20A-209ENST00000559728 DNAJC5Q9H3Z4 198 aa15.23■□□□□ 0.03
HMG20A-209ENST00000559728 CHMP7Q8WUX9 453 aaPredicted RBP15.19■□□□□ 0.02
HMG20A-209ENST00000559728 CARMIL1Q5VZK9 1371 aa15.19■□□□□ 0.02
HMG20A-209ENST00000559728 FBLN2P98095 1184 aa15.18■□□□□ 0.02
HMG20A-209ENST00000559728 OSCARQ8IYS5 282 aa15.18■□□□□ 0.02
HMG20A-209ENST00000559728 GRIN2AQ12879 1464 aa15.18■□□□□ 0.02
HMG20A-209ENST00000559728 SCAF1Q9H7N4 1312 aaKnown RBP15.17■□□□□ 0.02
HMG20A-209ENST00000559728 PRXQ9BXM0 1461 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms