RNA–Protein interactions for RNA: ENST00000336216.8

HMG20A-201, Transcript of high mobility group 20A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMG20A, Length 4,046 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMG20A-201ENST00000336216 NISCHQ9Y2I1 1504 aa12.58□□□□□ -0.4
HMG20A-201ENST00000336216 DCAF8L2P0C7V8 631 aa11.71□□□□□ -0.53
HMG20A-201ENST00000336216 SUPT5HO00267 1087 aaKnown RBP11.24□□□□□ -0.61
HMG20A-201ENST00000336216 SHROOM4Q9ULL8 1493 aa11.23□□□□□ -0.61
HMG20A-201ENST00000336216 CCDC180Q9P1Z9 1646 aa10.89□□□□□ -0.67
HMG20A-201ENST00000336216 EHMT2Q96KQ7 1210 aa10.87□□□□□ -0.67
HMG20A-201ENST00000336216 FAM9AQ8IZU1 332 aaPredicted RBP10.59□□□□□ -0.71
HMG20A-201ENST00000336216 PCGF6Q9BYE7 350 aa10.58□□□□□ -0.72
HMG20A-201ENST00000336216 ZCCHC6Q5VYS8 1495 aaKnown RBP10.55□□□□□ -0.72
HMG20A-201ENST00000336216 PPARGC1BQ86YN6 1023 aaKnown RBP10.44□□□□□ -0.74
HMG20A-201ENST00000336216 TTBK1Q5TCY1 1321 aaPredicted RBP10.43□□□□□ -0.74
HMG20A-201ENST00000336216 HRCP23327 699 aa10.42□□□□□ -0.74
HMG20A-201ENST00000336216 ABCC9O60706 1549 aa10.38□□□□□ -0.75
HMG20A-201ENST00000336216 DCAF1Q9Y4B6 1507 aa10.37□□□□□ -0.75
HMG20A-201ENST00000336216 RANGAP1P46060 587 aaPredicted RBP10.3□□□□□ -0.76
HMG20A-201ENST00000336216 TRIM41Q8WV44 630 aa10.27□□□□□ -0.77
HMG20A-201ENST00000336216 LOC105371045A0A1W2PR82 267 aa10.24□□□□□ -0.77
HMG20A-201ENST00000336216 MYO15BQ96JP2 1530 aa10.22□□□□□ -0.77
HMG20A-201ENST00000336216 CHIC1Q5VXU3 224 aa10.21□□□□□ -0.78
HMG20A-201ENST00000336216 NACADO15069 1562 aa10.21□□□□□ -0.78
HMG20A-201ENST00000336216 RB1CC1Q8TDY2 1594 aa10.14□□□□□ -0.79
HMG20A-201ENST00000336216 SCRIBQ14160 1630 aa10.1□□□□□ -0.79
HMG20A-201ENST00000336216 UBTFP17480 764 aaKnown RBP10.06□□□□□ -0.8
HMG20A-201ENST00000336216 APLP2Q06481 763 aa10.04□□□□□ -0.8
HMG20A-201ENST00000336216 PABPN1Q86U42 306 aaKnown RBP eCLIP10.02□□□□□ -0.81
HMG20A-201ENST00000336216 TRIM26Q12899 539 aaPredicted RBP10.01□□□□□ -0.81
HMG20A-201ENST00000336216 PELP1Q8IZL8 1130 aaKnown RBP10□□□□□ -0.81
HMG20A-201ENST00000336216 ATP1B4Q9UN42 357 aaPredicted RBP9.98□□□□□ -0.81
HMG20A-201ENST00000336216 CCER1Q8TC90 406 aaPredicted RBP9.96□□□□□ -0.82
HMG20A-201ENST00000336216 ZEB1P37275 1124 aaPredicted RBP9.92□□□□□ -0.82
HMG20A-201ENST00000336216 YTHDC1Q96MU7 727 aaKnown RBP9.86□□□□□ -0.83
HMG20A-201ENST00000336216 SCAF1Q9H7N4 1312 aaKnown RBP9.84□□□□□ -0.83
HMG20A-201ENST00000336216 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.82□□□□□ -0.84
HMG20A-201ENST00000336216 ITGAEP38570 1179 aa9.81□□□□□ -0.84
HMG20A-201ENST00000336216 CENPBP07199 599 aaPredicted RBP9.81□□□□□ -0.84
HMG20A-201ENST00000336216 RSF1Q96T23 1441 aaPredicted RBP9.8□□□□□ -0.84
HMG20A-201ENST00000336216 CECR2Q9BXF3 1484 aa9.8□□□□□ -0.84
HMG20A-201ENST00000336216 HNRNPUL2Q1KMD3 747 aaKnown RBP9.79□□□□□ -0.84
HMG20A-201ENST00000336216 BAZ1AQ9NRL2 1556 aaPredicted RBP9.76□□□□□ -0.85
HMG20A-201ENST00000336216 GTF3C3Q9Y5Q9 886 aa9.76□□□□□ -0.85
HMG20A-201ENST00000336216 UNC13AQ9UPW8 1703 aa9.72□□□□□ -0.85
HMG20A-201ENST00000336216 MROH2BQ7Z745 1585 aa9.72□□□□□ -0.85
HMG20A-201ENST00000336216 NEUROD1Q13562 356 aa9.69□□□□□ -0.86
HMG20A-201ENST00000336216 DIEXFQ68CQ4 756 aaKnown RBP9.69□□□□□ -0.86
HMG20A-201ENST00000336216 ACIN1Q9UKV3 1341 aaKnown RBP9.68□□□□□ -0.86
HMG20A-201ENST00000336216 WIZO95785 1651 aa9.67□□□□□ -0.86
HMG20A-201ENST00000336216 BICRAQ9NZM4 1560 aa9.64□□□□□ -0.87
HMG20A-201ENST00000336216 SMARCA4P51532 1647 aa9.64□□□□□ -0.87
HMG20A-201ENST00000336216 MYT1Q01538 1121 aa9.59□□□□□ -0.87
HMG20A-201ENST00000336216 CNGB1Q14028 1251 aaPredicted RBP9.57□□□□□ -0.88
HMG20A-201ENST00000336216 TOP2AP11388 1531 aaKnown RBP9.56□□□□□ -0.88
HMG20A-201ENST00000336216 SMARCA2P51531 1590 aa9.55□□□□□ -0.88
HMG20A-201ENST00000336216 P3H3Q8IVL6 736 aa9.54□□□□□ -0.88
HMG20A-201ENST00000336216 BAZ1BQ9UIG0 1483 aaKnown RBP9.54□□□□□ -0.88
HMG20A-201ENST00000336216 CSRNP3Q8WYN3 585 aa9.52□□□□□ -0.89
HMG20A-201ENST00000336216 ARID3CA6NKF2 412 aa9.5□□□□□ -0.89
HMG20A-201ENST00000336216 ATAD2BQ9ULI0 1458 aa9.5□□□□□ -0.89
HMG20A-201ENST00000336216 FAM50AQ14320 339 aaKnown RBP9.48□□□□□ -0.89
HMG20A-201ENST00000336216 CCDC88BA6NC98 1476 aa9.47□□□□□ -0.89
HMG20A-201ENST00000336216 POLR3GLQ9BT43 218 aa9.46□□□□□ -0.89
HMG20A-201ENST00000336216 EIF4G1Q04637 1599 aaKnown RBP9.46□□□□□ -0.9
HMG20A-201ENST00000336216 PEG3Q9GZU2 1588 aa9.45□□□□□ -0.9
HMG20A-201ENST00000336216 ZNF316A6NFI3 1004 aaPredicted RBP9.44□□□□□ -0.9
HMG20A-201ENST00000336216 FBLN2P98095 1184 aa9.42□□□□□ -0.9
HMG20A-201ENST00000336216 NCAPD3P42695 1498 aa9.41□□□□□ -0.9
HMG20A-201ENST00000336216 ABCC8Q09428 1581 aa9.4□□□□□ -0.91
HMG20A-201ENST00000336216 MIER1Q8N108 512 aa9.39□□□□□ -0.91
HMG20A-201ENST00000336216 BCANQ96GW7 911 aa9.39□□□□□ -0.91
HMG20A-201ENST00000336216 HMGXB3Q12766 1538 aa9.38□□□□□ -0.91
HMG20A-201ENST00000336216 MYT1LQ9UL68 1186 aa9.37□□□□□ -0.91
HMG20A-201ENST00000336216 TRIM52Q96A61 297 aa9.33□□□□□ -0.92
HMG20A-201ENST00000336216 WRNQ14191 1432 aaPredicted RBP eCLIP9.32□□□□□ -0.92
HMG20A-201ENST00000336216 CC2D2AQ9P2K1 1620 aa9.3□□□□□ -0.92
HMG20A-201ENST00000336216 ZNF326Q5BKZ1 582 aaKnown RBP9.28□□□□□ -0.92
HMG20A-201ENST00000336216 EEA1Q15075 1411 aa9.27□□□□□ -0.93
HMG20A-201ENST00000336216 NEFLP07196 543 aa9.26□□□□□ -0.93
HMG20A-201ENST00000336216 ERICH6Q7L0X2 663 aa9.25□□□□□ -0.93
HMG20A-201ENST00000336216 SOGA1O94964 1423 aa9.25□□□□□ -0.93
HMG20A-201ENST00000336216 RUSC2Q8N2Y8 1516 aa9.24□□□□□ -0.93
HMG20A-201ENST00000336216 CADPSQ9ULU8 1353 aa9.24□□□□□ -0.93
HMG20A-201ENST00000336216 HIRIP3Q9BW71 556 aaPredicted RBP9.23□□□□□ -0.93
HMG20A-201ENST00000336216 ZNF777Q9ULD5 760 aaPredicted RBP9.22□□□□□ -0.93
HMG20A-201ENST00000336216 CFTRP13569 1480 aa9.21□□□□□ -0.93
HMG20A-201ENST00000336216 CHIC2Q9UKJ5 165 aa9.21□□□□□ -0.94
HMG20A-201ENST00000336216 SYNJ1O43426 1573 aa9.19□□□□□ -0.94
HMG20A-201ENST00000336216 FKBP8Q14318 412 aa9.16□□□□□ -0.94
HMG20A-201ENST00000336216 CEP162Q5TB80 1403 aa9.16□□□□□ -0.94
HMG20A-201ENST00000336216 CLIP1P30622 1438 aa9.15□□□□□ -0.94
HMG20A-201ENST00000336216 SLC4A1APQ9BWU0 796 aaKnown RBP9.14□□□□□ -0.95
HMG20A-201ENST00000336216 SUPT16HQ9Y5B9 1047 aaKnown RBP9.14□□□□□ -0.95
HMG20A-201ENST00000336216 PDS5BQ9NTI5 1447 aa9.14□□□□□ -0.95
HMG20A-201ENST00000336216 DDX10Q13206 875 aaKnown RBP9.14□□□□□ -0.95
HMG20A-201ENST00000336216 GOLGA3Q08378 1498 aa9.13□□□□□ -0.95
HMG20A-201ENST00000336216 FANCD2Q9BXW9 1451 aa9.13□□□□□ -0.95
HMG20A-201ENST00000336216 KIF27Q86VH2 1401 aa9.12□□□□□ -0.95
HMG20A-201ENST00000336216 TOP2BQ02880 1626 aa9.12□□□□□ -0.95
HMG20A-201ENST00000336216 CEP164Q9UPV0 1460 aa9.12□□□□□ -0.95
HMG20A-201ENST00000336216 ANP32EQ9BTT0 268 aa9.09□□□□□ -0.95
HMG20A-201ENST00000336216 TNIKQ9UKE5 1360 aa9.09□□□□□ -0.95
HMG20A-201ENST00000336216 LAMC3Q9Y6N6 1575 aa9.09□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms