RNA–Protein interactions for RNA: ENST00000509903.5

CAST-228, Transcript of calpastatin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CAST, Length 2,171 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAST-228ENST00000509903 CHIC1Q5VXU3 224 aa17.9■□□□□ 0.46
CAST-228ENST00000509903 AEBP2Q6ZN18 517 aaPredicted RBP17.56■□□□□ 0.4
CAST-228ENST00000509903 PHF23Q9BUL5 403 aaPredicted RBP16.11■□□□□ 0.17
CAST-228ENST00000509903 NISCHQ9Y2I1 1504 aa15.73■□□□□ 0.11
CAST-228ENST00000509903 PLPPR3Q6T4P5 718 aa14.9□□□□□ -0.02
CAST-228ENST00000509903 EHMT2Q96KQ7 1210 aa14.89□□□□□ -0.03
CAST-228ENST00000509903 KCNA4P22459 653 aa14.49□□□□□ -0.09
CAST-228ENST00000509903 ADRA2BP18089 450 aa14.36□□□□□ -0.11
CAST-228ENST00000509903 SENP3Q9H4L4 574 aaPredicted RBP14.33□□□□□ -0.12
CAST-228ENST00000509903 CSRNP3Q8WYN3 585 aa14.15□□□□□ -0.15
CAST-228ENST00000509903 PPP6R1Q9UPN7 881 aa13.95□□□□□ -0.18
CAST-228ENST00000509903 SLC24A1O60721 1099 aa13.87□□□□□ -0.19
CAST-228ENST00000509903 SLC4A1APQ9BWU0 796 aaKnown RBP13.8□□□□□ -0.2
CAST-228ENST00000509903 RTN4Q9NQC3 1192 aaKnown RBP13.58□□□□□ -0.24
CAST-228ENST00000509903 CCDC180Q9P1Z9 1646 aa13.47□□□□□ -0.25
CAST-228ENST00000509903 ZBTB22O15209 634 aa13.47□□□□□ -0.25
CAST-228ENST00000509903 FOXD1Q16676 465 aa13.45□□□□□ -0.26
CAST-228ENST00000509903 PPP4R3CPQ6ZMV5 832 aa13.4□□□□□ -0.26
CAST-228ENST00000509903 ZCCHC6Q5VYS8 1495 aaKnown RBP13.3□□□□□ -0.28
CAST-228ENST00000509903 SHROOM4Q9ULL8 1493 aa13.29□□□□□ -0.28
CAST-228ENST00000509903 NPM3O75607 178 aaKnown RBP13.24□□□□□ -0.29
CAST-228ENST00000509903 AMER1Q5JTC6 1135 aaPredicted RBP13.18□□□□□ -0.3
CAST-228ENST00000509903 NCBP3Q53F19 620 aaKnown RBP13.08□□□□□ -0.31
CAST-228ENST00000509903 DCAF8L2P0C7V8 631 aa13.04□□□□□ -0.32
CAST-228ENST00000509903 SUPT5HO00267 1087 aaKnown RBP13□□□□□ -0.33
CAST-228ENST00000509903 DCAF1Q9Y4B6 1507 aa12.94□□□□□ -0.34
CAST-228ENST00000509903 PIAS4Q8N2W9 510 aaPredicted RBP12.87□□□□□ -0.35
CAST-228ENST00000509903 FOXD4L1Q9NU39 408 aa12.77□□□□□ -0.37
CAST-228ENST00000509903 FKBP8Q14318 412 aa12.66□□□□□ -0.38
CAST-228ENST00000509903 CNKSR2Q8WXI2 1034 aa12.64□□□□□ -0.39
CAST-228ENST00000509903 MYO15BQ96JP2 1530 aa12.62□□□□□ -0.39
CAST-228ENST00000509903 SCRIBQ14160 1630 aa12.56□□□□□ -0.4
CAST-228ENST00000509903 ABCC9O60706 1549 aa12.53□□□□□ -0.4
CAST-228ENST00000509903 PRKCSHP14314 528 aaPredicted RBP12.51□□□□□ -0.41
CAST-228ENST00000509903 NACADO15069 1562 aa12.48□□□□□ -0.41
CAST-228ENST00000509903 MAPK8IP2Q13387 824 aaPredicted RBP12.42□□□□□ -0.42
CAST-228ENST00000509903 RSF1Q96T23 1441 aaPredicted RBP12.39□□□□□ -0.43
CAST-228ENST00000509903 SLC4A2P04920 1241 aa12.32□□□□□ -0.44
CAST-228ENST00000509903 DNAJC5BQ9UF47 199 aa12.32□□□□□ -0.44
CAST-228ENST00000509903 RB1CC1Q8TDY2 1594 aa12.29□□□□□ -0.44
CAST-228ENST00000509903 SCAF1Q9H7N4 1312 aaKnown RBP12.25□□□□□ -0.45
CAST-228ENST00000509903 PLCB2Q00722 1185 aa12.25□□□□□ -0.45
CAST-228ENST00000509903 CECR2Q9BXF3 1484 aa12.24□□□□□ -0.45
CAST-228ENST00000509903 MROH2BQ7Z745 1585 aa12.2□□□□□ -0.46
CAST-228ENST00000509903 LOC105371045A0A1W2PR82 267 aa12.17□□□□□ -0.46
CAST-228ENST00000509903 TRIM41Q8WV44 630 aa12.15□□□□□ -0.47
CAST-228ENST00000509903 HAP1P54257 671 aaPredicted RBP12.13□□□□□ -0.47
CAST-228ENST00000509903 RNF216Q9NWF9 866 aaPredicted RBP12.13□□□□□ -0.47
CAST-228ENST00000509903 TAOK2Q9UL54 1235 aa12.13□□□□□ -0.47
CAST-228ENST00000509903 WIZO95785 1651 aa12.13□□□□□ -0.47
CAST-228ENST00000509903 BAZ1AQ9NRL2 1556 aaPredicted RBP12.12□□□□□ -0.47
CAST-228ENST00000509903 PCGF6Q9BYE7 350 aa12.09□□□□□ -0.47
CAST-228ENST00000509903 UNC13AQ9UPW8 1703 aa12.06□□□□□ -0.48
CAST-228ENST00000509903 ATXN8OSP0DMR3 200 aa12.04□□□□□ -0.48
CAST-228ENST00000509903 HRCP23327 699 aa12.03□□□□□ -0.48
CAST-228ENST00000509903 BCANQ96GW7 911 aa12.03□□□□□ -0.48
CAST-228ENST00000509903 SMARCA4P51532 1647 aa12.01□□□□□ -0.49
CAST-228ENST00000509903 ATF5Q9Y2D1 282 aaPredicted RBP12.01□□□□□ -0.49
CAST-228ENST00000509903 FAM9AQ8IZU1 332 aaPredicted RBP12□□□□□ -0.49
CAST-228ENST00000509903 MYCNP04198 464 aaPredicted RBP11.99□□□□□ -0.49
CAST-228ENST00000509903 TPRNQ4KMQ1 711 aa11.99□□□□□ -0.49
CAST-228ENST00000509903 TOP2AP11388 1531 aaKnown RBP11.98□□□□□ -0.49
CAST-228ENST00000509903 EIF4G1Q04637 1599 aaKnown RBP11.93□□□□□ -0.5
CAST-228ENST00000509903 TRIM26Q12899 539 aaPredicted RBP11.92□□□□□ -0.5
CAST-228ENST00000509903 PABPN1Q86U42 306 aaKnown RBP eCLIP11.91□□□□□ -0.5
CAST-228ENST00000509903 BICRAQ9NZM4 1560 aa11.9□□□□□ -0.5
CAST-228ENST00000509903 CCDC88BA6NC98 1476 aa11.89□□□□□ -0.51
CAST-228ENST00000509903 SMARCA2P51531 1590 aa11.89□□□□□ -0.51
CAST-228ENST00000509903 KDM2AQ9Y2K7 1162 aa11.89□□□□□ -0.51
CAST-228ENST00000509903 FBLN2P98095 1184 aa11.85□□□□□ -0.51
CAST-228ENST00000509903 HOXD11P31277 338 aaPredicted RBP11.84□□□□□ -0.51
CAST-228ENST00000509903 ABCC8Q09428 1581 aa11.82□□□□□ -0.52
CAST-228ENST00000509903 TIMELESSQ9UNS1 1208 aa11.81□□□□□ -0.52
CAST-228ENST00000509903 PEG3Q9GZU2 1588 aa11.79□□□□□ -0.52
CAST-228ENST00000509903 VSIG10Q8N0Z9 540 aa11.78□□□□□ -0.52
CAST-228ENST00000509903 PPARGC1BQ86YN6 1023 aaKnown RBP11.74□□□□□ -0.53
CAST-228ENST00000509903 ATAD2BQ9ULI0 1458 aa11.72□□□□□ -0.53
CAST-228ENST00000509903 PKD2Q13563 968 aa11.72□□□□□ -0.53
CAST-228ENST00000509903 IFNLR1Q8IU57 520 aaPredicted RBP11.71□□□□□ -0.54
CAST-228ENST00000509903 BAZ1BQ9UIG0 1483 aaKnown RBP11.71□□□□□ -0.54
CAST-228ENST00000509903 EEA1Q15075 1411 aa11.69□□□□□ -0.54
CAST-228ENST00000509903 TULP1O00294 542 aaPredicted RBP11.68□□□□□ -0.54
CAST-228ENST00000509903 SOGA1O94964 1423 aa11.68□□□□□ -0.54
CAST-228ENST00000509903 DMRT2Q9Y5R5 561 aa11.68□□□□□ -0.54
CAST-228ENST00000509903 WRNQ14191 1432 aaPredicted RBP eCLIP11.67□□□□□ -0.54
CAST-228ENST00000509903 ZEB1P37275 1124 aaPredicted RBP11.65□□□□□ -0.54
CAST-228ENST00000509903 MSH5O43196 834 aa11.63□□□□□ -0.55
CAST-228ENST00000509903 NPM1P06748 294 aaKnown RBP eCLIP11.63□□□□□ -0.55
CAST-228ENST00000509903 VASPP50552 380 aaPredicted RBP11.63□□□□□ -0.55
CAST-228ENST00000509903 CEP162Q5TB80 1403 aa11.62□□□□□ -0.55
CAST-228ENST00000509903 TNIKQ9UKE5 1360 aa11.61□□□□□ -0.55
CAST-228ENST00000509903 RUSC2Q8N2Y8 1516 aa11.61□□□□□ -0.55
CAST-228ENST00000509903 SYNJ1O43426 1573 aa11.59□□□□□ -0.55
CAST-228ENST00000509903 UBTFP17480 764 aaKnown RBP11.59□□□□□ -0.55
CAST-228ENST00000509903 GOLGA3Q08378 1498 aa11.58□□□□□ -0.56
CAST-228ENST00000509903 PAXIP1Q6ZW49 1069 aaPredicted RBP11.58□□□□□ -0.56
CAST-228ENST00000509903 FBXO3Q9UK99 471 aa11.58□□□□□ -0.56
CAST-228ENST00000509903 CFAP44Q96MT7 982 aa11.56□□□□□ -0.56
CAST-228ENST00000509903 DAXXQ9UER7 740 aaPredicted RBP11.55□□□□□ -0.56
CAST-228ENST00000509903 HMGXB3Q12766 1538 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 126.5 ms