RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 NISCHQ9Y2I1 1504 aa32.59■■■□□ 2.81
CLK3-216ENST00000564468 CCDC180Q9P1Z9 1646 aa29.09■■■□□ 2.25
CLK3-216ENST00000564468 ABCC9O60706 1549 aa28.71■■■□□ 2.19
CLK3-216ENST00000564468 RB1CC1Q8TDY2 1594 aa27.42■■□□□ 1.98
CLK3-216ENST00000564468 NACADO15069 1562 aa27.36■■□□□ 1.97
CLK3-216ENST00000564468 DCAF8L2P0C7V8 631 aa27.28■■□□□ 1.96
CLK3-216ENST00000564468 DNAJC5BQ9UF47 199 aa27.27■■□□□ 1.96
CLK3-216ENST00000564468 MYO15BQ96JP2 1530 aa27.16■■□□□ 1.94
CLK3-216ENST00000564468 ZCCHC6Q5VYS8 1495 aaKnown RBP27.11■■□□□ 1.93
CLK3-216ENST00000564468 DCAF1Q9Y4B6 1507 aa27■■□□□ 1.91
CLK3-216ENST00000564468 UNC13AQ9UPW8 1703 aa26.81■■□□□ 1.88
CLK3-216ENST00000564468 PABPN1Q86U42 306 aaKnown RBP eCLIP26.74■■□□□ 1.873e-7■□□□□ 9.5
CLK3-216ENST00000564468 BICRAQ9NZM4 1560 aa26.51■■□□□ 1.83
CLK3-216ENST00000564468 SCRIBQ14160 1630 aa26.46■■□□□ 1.83
CLK3-216ENST00000564468 SHROOM4Q9ULL8 1493 aa26.32■■□□□ 1.8
CLK3-216ENST00000564468 CECR2Q9BXF3 1484 aa25.95■■□□□ 1.74
CLK3-216ENST00000564468 CC2D2AQ9P2K1 1620 aa25.88■■□□□ 1.73
CLK3-216ENST00000564468 EIF4G1Q04637 1599 aaKnown RBP25.86■■□□□ 1.73
CLK3-216ENST00000564468 DNAJC5Q9H3Z4 198 aa25.45■■□□□ 1.66
CLK3-216ENST00000564468 SMARCA4P51532 1647 aa25.33■■□□□ 1.65
CLK3-216ENST00000564468 BAZ1AQ9NRL2 1556 aaPredicted RBP25.31■■□□□ 1.64
CLK3-216ENST00000564468 SMARCA2P51531 1590 aa25.22■■□□□ 1.63
CLK3-216ENST00000564468 NCAPD3P42695 1498 aa25.21■■□□□ 1.63
CLK3-216ENST00000564468 ATAD2BQ9ULI0 1458 aa25.18■■□□□ 1.62
CLK3-216ENST00000564468 HMGXB3Q12766 1538 aa25.09■■□□□ 1.61
CLK3-216ENST00000564468 MROH2BQ7Z745 1585 aa25.08■■□□□ 1.61
CLK3-216ENST00000564468 PEG3Q9GZU2 1588 aa25.08■■□□□ 1.61
CLK3-216ENST00000564468 BAZ1BQ9UIG0 1483 aaKnown RBP25■■□□□ 1.59
CLK3-216ENST00000564468 CUX2O14529 1486 aa24.96■■□□□ 1.59
CLK3-216ENST00000564468 ERCC6Q03468 1493 aa24.91■■□□□ 1.58
CLK3-216ENST00000564468 WIZO95785 1651 aa24.84■■□□□ 1.57
CLK3-216ENST00000564468 RSF1Q96T23 1441 aaPredicted RBP24.77■■□□□ 1.56
CLK3-216ENST00000564468 LAMC3Q9Y6N6 1575 aa24.6■■□□□ 1.53
CLK3-216ENST00000564468 TOP2AP11388 1531 aaKnown RBP24.58■■□□□ 1.53
CLK3-216ENST00000564468 NESP48681 1621 aa24.57■■□□□ 1.52
CLK3-216ENST00000564468 CADPSQ9ULU8 1353 aa24.47■■□□□ 1.51
CLK3-216ENST00000564468 PDS5BQ9NTI5 1447 aa24.44■■□□□ 1.5
CLK3-216ENST00000564468 KIF21AQ7Z4S6 1674 aa24.37■■□□□ 1.49
CLK3-216ENST00000564468 CFTRP13569 1480 aa24.29■■□□□ 1.48
CLK3-216ENST00000564468 THOC2Q8NI27 1593 aaKnown RBP24.29■■□□□ 1.48
CLK3-216ENST00000564468 CCDC88BA6NC98 1476 aa24.26■■□□□ 1.47
CLK3-216ENST00000564468 PRDM2Q13029 1718 aa24.22■■□□□ 1.47
CLK3-216ENST00000564468 CEP164Q9UPV0 1460 aa24.19■■□□□ 1.46
CLK3-216ENST00000564468 TRIM41Q8WV44 630 aa24.18■■□□□ 1.46
CLK3-216ENST00000564468 FANCD2Q9BXW9 1451 aa24.18■■□□□ 1.46
CLK3-216ENST00000564468 MRC2Q9UBG0 1479 aa24.16■■□□□ 1.46
CLK3-216ENST00000564468 WDR62O43379 1518 aa24.07■■□□□ 1.44
CLK3-216ENST00000564468 SUPT5HO00267 1087 aaKnown RBP24.07■■□□□ 1.44
CLK3-216ENST00000564468 URB2Q14146 1524 aaKnown RBP23.91■■□□□ 1.42
CLK3-216ENST00000564468 OSCARQ8IYS5 282 aa23.88■■□□□ 1.41
CLK3-216ENST00000564468 ABCC8Q09428 1581 aa23.86■■□□□ 1.41
CLK3-216ENST00000564468 TOPBP1Q92547 1522 aa23.78■■□□□ 1.4
CLK3-216ENST00000564468 DNMBPQ6XZF7 1577 aa23.78■■□□□ 1.4
CLK3-216ENST00000564468 IFT140Q96RY7 1462 aa23.68■■□□□ 1.38
CLK3-216ENST00000564468 POLA1P09884 1462 aaPredicted RBP23.56■■□□□ 1.36
CLK3-216ENST00000564468 CUX1P39880 1505 aa23.54■■□□□ 1.36
CLK3-216ENST00000564468 TARBP1Q13395 1621 aaKnown RBP23.54■■□□□ 1.36
CLK3-216ENST00000564468 ZNF608Q9ULD9 1512 aaPredicted RBP23.51■■□□□ 1.35
CLK3-216ENST00000564468 FGD5Q6ZNL6 1462 aa23.49■■□□□ 1.35
CLK3-216ENST00000564468 SOGA1O94964 1423 aa23.49■■□□□ 1.35
CLK3-216ENST00000564468 EIF4G3O43432 1585 aaKnown RBP23.47■■□□□ 1.35
CLK3-216ENST00000564468 RAD54L2Q9Y4B4 1467 aa23.43■■□□□ 1.34
CLK3-216ENST00000564468 WDR97A6NE52 1622 aa23.42■■□□□ 1.34
CLK3-216ENST00000564468 WRNQ14191 1432 aaPredicted RBP eCLIP23.39■■□□□ 1.33
CLK3-216ENST00000564468 AQRO60306 1485 aaKnown RBP eCLIP23.38■■□□□ 1.332e-7■■■■■ 43.9
CLK3-216ENST00000564468 RIMBP3CA6NJZ7 1639 aa23.38■■□□□ 1.33
CLK3-216ENST00000564468 RIMBP3BA6NNM3 1639 aa23.38■■□□□ 1.33
CLK3-216ENST00000564468 RIMBP3Q9UFD9 1639 aa23.38■■□□□ 1.33
CLK3-216ENST00000564468 BIVM-ERCC5R4GMW8 1640 aa23.37■■□□□ 1.33
CLK3-216ENST00000564468 TOP2BQ02880 1626 aa23.36■■□□□ 1.33
CLK3-216ENST00000564468 TDRD9Q8NDG6 1382 aaKnown RBP23.33■■□□□ 1.33
CLK3-216ENST00000564468 ARHGEF11O15085 1522 aa23.33■■□□□ 1.32
CLK3-216ENST00000564468 CYB5RLQ6IPT4 315 aa23.31■■□□□ 1.32
CLK3-216ENST00000564468 SYNJ1O43426 1573 aa23.3■■□□□ 1.32
CLK3-216ENST00000564468 ABCA10Q8WWZ4 1543 aa23.28■■□□□ 1.32
CLK3-216ENST00000564468 CHD1O14646 1710 aa23.24■■□□□ 1.31
CLK3-216ENST00000564468 GRIN2BQ13224 1484 aa23.24■■□□□ 1.31
CLK3-216ENST00000564468 TRHP20396 242 aaPredicted RBP23.22■■□□□ 1.31
CLK3-216ENST00000564468 GAPVD1Q14C86 1478 aa23.22■■□□□ 1.31
CLK3-216ENST00000564468 PBRM1Q86U86 1689 aa23.22■■□□□ 1.31
CLK3-216ENST00000564468 MAGI1Q96QZ7 1491 aaPredicted RBP23.2■■□□□ 1.3
CLK3-216ENST00000564468 FBLN2P98095 1184 aa23.2■■□□□ 1.3
CLK3-216ENST00000564468 ABCA5Q8WWZ7 1642 aa23.19■■□□□ 1.3
CLK3-216ENST00000564468 SNAPC4Q5SXM2 1469 aa23.18■■□□□ 1.3
CLK3-216ENST00000564468 CHMP7Q8WUX9 453 aaPredicted RBP23.11■■□□□ 1.29
CLK3-216ENST00000564468 SYNJ2O15056 1496 aa23.09■■□□□ 1.29
CLK3-216ENST00000564468 ARAP1Q96P48 1450 aa23.05■■□□□ 1.28
CLK3-216ENST00000564468 ERICH3Q5RHP9 1530 aa23.03■■□□□ 1.28
CLK3-216ENST00000564468 ADAMTS12P58397 1594 aa22.97■■□□□ 1.27
CLK3-216ENST00000564468 FHAD1B1AJZ9 1412 aa22.95■■□□□ 1.26
CLK3-216ENST00000564468 KIF27Q86VH2 1401 aa22.93■■□□□ 1.26
CLK3-216ENST00000564468 CLASP1Q7Z460 1538 aa22.92■■□□□ 1.26
CLK3-216ENST00000564468 GRIN2AQ12879 1464 aa22.92■■□□□ 1.26
CLK3-216ENST00000564468 AEBP2Q6ZN18 517 aaPredicted RBP22.88■■□□□ 1.25
CLK3-216ENST00000564468 CUL7Q14999 1698 aa22.83■■□□□ 1.24
CLK3-216ENST00000564468 NUP160Q12769 1436 aa22.82■■□□□ 1.24
CLK3-216ENST00000564468 IGF1RP08069 1367 aa22.8■■□□□ 1.24
CLK3-216ENST00000564468 CEP170Q5SW79 1584 aa22.79■■□□□ 1.24
CLK3-216ENST00000564468 CARMIL1Q5VZK9 1371 aa22.7■■□□□ 1.22
CLK3-216ENST00000564468 SHROOM2Q13796 1616 aa22.68■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 183.7 ms