RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 NISCHQ9Y2I1 1504 aa31.8■■■□□ 2.68
CLK3-204ENST00000483723 CCDC180Q9P1Z9 1646 aa27.7■■■□□ 2.03
CLK3-204ENST00000483723 ZCCHC6Q5VYS8 1495 aaKnown RBP26.72■■□□□ 1.87
CLK3-204ENST00000483723 DCAF1Q9Y4B6 1507 aa26.34■■□□□ 1.81
CLK3-204ENST00000483723 DCAF8L2P0C7V8 631 aa26.11■■□□□ 1.77
CLK3-204ENST00000483723 ABCC9O60706 1549 aa26.05■■□□□ 1.76
CLK3-204ENST00000483723 MYO15BQ96JP2 1530 aa26.02■■□□□ 1.76
CLK3-204ENST00000483723 SHROOM4Q9ULL8 1493 aa25.86■■□□□ 1.73
CLK3-204ENST00000483723 NACADO15069 1562 aa25.79■■□□□ 1.72
CLK3-204ENST00000483723 RB1CC1Q8TDY2 1594 aa25.51■■□□□ 1.67
CLK3-204ENST00000483723 SCRIBQ14160 1630 aa25.4■■□□□ 1.66
CLK3-204ENST00000483723 UNC13AQ9UPW8 1703 aa25.03■■□□□ 1.6
CLK3-204ENST00000483723 SUPT5HO00267 1087 aaKnown RBP24.93■■□□□ 1.58
CLK3-204ENST00000483723 BICRAQ9NZM4 1560 aa24.79■■□□□ 1.56
CLK3-204ENST00000483723 RSF1Q96T23 1441 aaPredicted RBP24.69■■□□□ 1.54
CLK3-204ENST00000483723 CECR2Q9BXF3 1484 aa24.69■■□□□ 1.54
CLK3-204ENST00000483723 PABPN1Q86U42 306 aaKnown RBP eCLIP24.58■■□□□ 1.523e-7■□□□□ 9.5
CLK3-204ENST00000483723 MROH2BQ7Z745 1585 aa24.56■■□□□ 1.52
CLK3-204ENST00000483723 BAZ1AQ9NRL2 1556 aaPredicted RBP24.53■■□□□ 1.52
CLK3-204ENST00000483723 SMARCA4P51532 1647 aa24.41■■□□□ 1.5
CLK3-204ENST00000483723 WIZO95785 1651 aa24.34■■□□□ 1.49
CLK3-204ENST00000483723 PEG3Q9GZU2 1588 aa24.16■■□□□ 1.46
CLK3-204ENST00000483723 TOP2AP11388 1531 aaKnown RBP24.11■■□□□ 1.45
CLK3-204ENST00000483723 ATAD2BQ9ULI0 1458 aa24■■□□□ 1.43
CLK3-204ENST00000483723 CHIC1Q5VXU3 224 aa24■■□□□ 1.43
CLK3-204ENST00000483723 EIF4G1Q04637 1599 aaKnown RBP23.99■■□□□ 1.43
CLK3-204ENST00000483723 SMARCA2P51531 1590 aa23.98■■□□□ 1.43
CLK3-204ENST00000483723 CCDC88BA6NC98 1476 aa23.87■■□□□ 1.41
CLK3-204ENST00000483723 DNAJC5BQ9UF47 199 aa23.87■■□□□ 1.41
CLK3-204ENST00000483723 BAZ1BQ9UIG0 1483 aaKnown RBP23.83■■□□□ 1.41
CLK3-204ENST00000483723 NCAPD3P42695 1498 aa23.82■■□□□ 1.4
CLK3-204ENST00000483723 HMGXB3Q12766 1538 aa23.76■■□□□ 1.39
CLK3-204ENST00000483723 CC2D2AQ9P2K1 1620 aa23.61■■□□□ 1.37
CLK3-204ENST00000483723 TRIM41Q8WV44 630 aa23.47■■□□□ 1.35
CLK3-204ENST00000483723 ABCC8Q09428 1581 aa23.34■■□□□ 1.33
CLK3-204ENST00000483723 CFTRP13569 1480 aa23.29■■□□□ 1.32
CLK3-204ENST00000483723 WRNQ14191 1432 aaPredicted RBP eCLIP23.21■■□□□ 1.31
CLK3-204ENST00000483723 CADPSQ9ULU8 1353 aa23.19■■□□□ 1.3
CLK3-204ENST00000483723 PRDM2Q13029 1718 aa23.17■■□□□ 1.3
CLK3-204ENST00000483723 SYNJ1O43426 1573 aa23.11■■□□□ 1.29
CLK3-204ENST00000483723 LOC105371045A0A1W2PR82 267 aa23.05■■□□□ 1.28
CLK3-204ENST00000483723 TOP2BQ02880 1626 aa23.03■■□□□ 1.28
CLK3-204ENST00000483723 BIVM-ERCC5R4GMW8 1640 aa23.02■■□□□ 1.28
CLK3-204ENST00000483723 FAM9AQ8IZU1 332 aaPredicted RBP22.99■■□□□ 1.27
CLK3-204ENST00000483723 LAMC3Q9Y6N6 1575 aa22.96■■□□□ 1.27
CLK3-204ENST00000483723 CUX1P39880 1505 aa22.95■■□□□ 1.26
CLK3-204ENST00000483723 EEA1Q15075 1411 aa22.95■■□□□ 1.26
CLK3-204ENST00000483723 SOGA1O94964 1423 aa22.94■■□□□ 1.26
CLK3-204ENST00000483723 NESP48681 1621 aa22.91■■□□□ 1.26
CLK3-204ENST00000483723 FANCD2Q9BXW9 1451 aa22.89■■□□□ 1.26
CLK3-204ENST00000483723 RUSC2Q8N2Y8 1516 aa22.86■■□□□ 1.25
CLK3-204ENST00000483723 CSRNP3Q8WYN3 585 aa22.8■■□□□ 1.24
CLK3-204ENST00000483723 PDS5BQ9NTI5 1447 aa22.76■■□□□ 1.23
CLK3-204ENST00000483723 CEP164Q9UPV0 1460 aa22.73■■□□□ 1.23
CLK3-204ENST00000483723 DNMBPQ6XZF7 1577 aa22.72■■□□□ 1.23
CLK3-204ENST00000483723 TOPBP1Q92547 1522 aa22.67■■□□□ 1.22
CLK3-204ENST00000483723 FGD5Q6ZNL6 1462 aa22.67■■□□□ 1.22
CLK3-204ENST00000483723 KIF21AQ7Z4S6 1674 aa22.65■■□□□ 1.22
CLK3-204ENST00000483723 KIF21BO75037 1637 aa22.63■■□□□ 1.21
CLK3-204ENST00000483723 URB2Q14146 1524 aaKnown RBP22.62■■□□□ 1.21
CLK3-204ENST00000483723 KIF27Q86VH2 1401 aa22.62■■□□□ 1.21
CLK3-204ENST00000483723 EHMT2Q96KQ7 1210 aa22.6■■□□□ 1.21
CLK3-204ENST00000483723 GOLGA3Q08378 1498 aa22.59■■□□□ 1.21
CLK3-204ENST00000483723 TNIKQ9UKE5 1360 aa22.58■■□□□ 1.21
CLK3-204ENST00000483723 POLA1P09884 1462 aaPredicted RBP22.55■■□□□ 1.2
CLK3-204ENST00000483723 CUX2O14529 1486 aa22.52■■□□□ 1.2
CLK3-204ENST00000483723 PRXQ9BXM0 1461 aa22.52■■□□□ 1.2
CLK3-204ENST00000483723 ABCA10Q8WWZ4 1543 aa22.51■■□□□ 1.19
CLK3-204ENST00000483723 ERICH3Q5RHP9 1530 aa22.48■■□□□ 1.19
CLK3-204ENST00000483723 RAD54L2Q9Y4B4 1467 aa22.47■■□□□ 1.19
CLK3-204ENST00000483723 MRC2Q9UBG0 1479 aa22.46■■□□□ 1.19
CLK3-204ENST00000483723 RAPGEF2Q9Y4G8 1499 aa22.46■■□□□ 1.19
CLK3-204ENST00000483723 UBTFP17480 764 aaKnown RBP22.45■■□□□ 1.18
CLK3-204ENST00000483723 IGF1RP08069 1367 aa22.45■■□□□ 1.18
CLK3-204ENST00000483723 WDR97A6NE52 1622 aa22.43■■□□□ 1.18
CLK3-204ENST00000483723 CEP162Q5TB80 1403 aa22.41■■□□□ 1.18
CLK3-204ENST00000483723 WDR62O43379 1518 aa22.36■■□□□ 1.17
CLK3-204ENST00000483723 TARBP1Q13395 1621 aaKnown RBP22.35■■□□□ 1.17
CLK3-204ENST00000483723 CARMIL1Q5VZK9 1371 aa22.32■■□□□ 1.16
CLK3-204ENST00000483723 ABCA5Q8WWZ7 1642 aa22.3■■□□□ 1.16
CLK3-204ENST00000483723 ERCC6Q03468 1493 aa22.29■■□□□ 1.16
CLK3-204ENST00000483723 THOC2Q8NI27 1593 aaKnown RBP22.27■■□□□ 1.16
CLK3-204ENST00000483723 CUL7Q14999 1698 aa22.24■■□□□ 1.15
CLK3-204ENST00000483723 GAPVD1Q14C86 1478 aa22.24■■□□□ 1.15
CLK3-204ENST00000483723 TDRD9Q8NDG6 1382 aaKnown RBP22.24■■□□□ 1.15
CLK3-204ENST00000483723 CLIP1P30622 1438 aa22.22■■□□□ 1.15
CLK3-204ENST00000483723 IFT140Q96RY7 1462 aa22.21■■□□□ 1.15
CLK3-204ENST00000483723 PBRM1Q86U86 1689 aa22.11■■□□□ 1.13
CLK3-204ENST00000483723 AQRO60306 1485 aaKnown RBP eCLIP22.09■■□□□ 1.131e-7■■■■■ 33.5
CLK3-204ENST00000483723 TRIM26Q12899 539 aaPredicted RBP22.07■■□□□ 1.12
CLK3-204ENST00000483723 ZNF608Q9ULD9 1512 aaPredicted RBP22.07■■□□□ 1.12
CLK3-204ENST00000483723 GRIN2BQ13224 1484 aa22.06■■□□□ 1.12
CLK3-204ENST00000483723 VPS8Q8N3P4 1428 aa22.06■■□□□ 1.12
CLK3-204ENST00000483723 ARAP1Q96P48 1450 aa22.02■■□□□ 1.12
CLK3-204ENST00000483723 FHAD1B1AJZ9 1412 aa22.02■■□□□ 1.11
CLK3-204ENST00000483723 PCGF6Q9BYE7 350 aa22.01■■□□□ 1.11
CLK3-204ENST00000483723 ARHGAP35Q9NRY4 1499 aa22.01■■□□□ 1.11
CLK3-204ENST00000483723 CTTNBP2Q8WZ74 1663 aa21.99■■□□□ 1.11
CLK3-204ENST00000483723 ADAMTS12P58397 1594 aa21.99■■□□□ 1.11
CLK3-204ENST00000483723 EIF4G3O43432 1585 aaKnown RBP21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms