RNA–Protein interactions for RNA: ENST00000309190.9

CAST-201, Transcript of calpastatin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CAST, Length 4,282 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAST-201ENST00000309190 NISCHQ9Y2I1 1504 aa10.2□□□□□ -0.78
CAST-201ENST00000309190 DCAF8L2P0C7V8 631 aa9.87□□□□□ -0.83
CAST-201ENST00000309190 SHROOM4Q9ULL8 1493 aa9.35□□□□□ -0.91
CAST-201ENST00000309190 ABCC9O60706 1549 aa9.14□□□□□ -0.95
CAST-201ENST00000309190 SUPT5HO00267 1087 aaKnown RBP9.05□□□□□ -0.96
CAST-201ENST00000309190 PABPN1Q86U42 306 aaKnown RBP eCLIP8.96□□□□□ -0.98
CAST-201ENST00000309190 CHIC1Q5VXU3 224 aa8.83□□□□□ -1
CAST-201ENST00000309190 EHMT2Q96KQ7 1210 aa8.82□□□□□ -1
CAST-201ENST00000309190 CCDC180Q9P1Z9 1646 aa8.76□□□□□ -1.01
CAST-201ENST00000309190 DNAJC5BQ9UF47 199 aa8.74□□□□□ -1.01
CAST-201ENST00000309190 ZCCHC6Q5VYS8 1495 aaKnown RBP8.65□□□□□ -1.02
CAST-201ENST00000309190 FAM9AQ8IZU1 332 aaPredicted RBP8.54□□□□□ -1.04
CAST-201ENST00000309190 SCRIBQ14160 1630 aa8.5□□□□□ -1.05
CAST-201ENST00000309190 AEBP2Q6ZN18 517 aaPredicted RBP8.5□□□□□ -1.05
CAST-201ENST00000309190 DCAF1Q9Y4B6 1507 aa8.49□□□□□ -1.05
CAST-201ENST00000309190 RANGAP1P46060 587 aaPredicted RBP8.44□□□□□ -1.06
CAST-201ENST00000309190 SLC24A1O60721 1099 aa8.42□□□□□ -1.06
CAST-201ENST00000309190 MYO15BQ96JP2 1530 aa8.39□□□□□ -1.07
CAST-201ENST00000309190 TTBK1Q5TCY1 1321 aaPredicted RBP8.33□□□□□ -1.08
CAST-201ENST00000309190 DNAJC5Q9H3Z4 198 aa8.29□□□□□ -1.08
CAST-201ENST00000309190 CECR2Q9BXF3 1484 aa8.29□□□□□ -1.08
CAST-201ENST00000309190 PPARGC1BQ86YN6 1023 aaKnown RBP8.22□□□□□ -1.09
CAST-201ENST00000309190 RB1CC1Q8TDY2 1594 aa8.22□□□□□ -1.09
CAST-201ENST00000309190 LOC105371045A0A1W2PR82 267 aa8.21□□□□□ -1.09
CAST-201ENST00000309190 TRIM41Q8WV44 630 aa8.21□□□□□ -1.1
CAST-201ENST00000309190 EIF4G1Q04637 1599 aaKnown RBP8.18□□□□□ -1.1
CAST-201ENST00000309190 NACADO15069 1562 aa8.14□□□□□ -1.11
CAST-201ENST00000309190 FBLN2P98095 1184 aa8.1□□□□□ -1.11
CAST-201ENST00000309190 ATP1B4Q9UN42 357 aaPredicted RBP8.09□□□□□ -1.12
CAST-201ENST00000309190 RSF1Q96T23 1441 aaPredicted RBP8.08□□□□□ -1.12
CAST-201ENST00000309190 MROH2BQ7Z745 1585 aa8.07□□□□□ -1.12
CAST-201ENST00000309190 PLPPR3Q6T4P5 718 aa8.05□□□□□ -1.12
CAST-201ENST00000309190 UBTFP17480 764 aaKnown RBP8.05□□□□□ -1.12
CAST-201ENST00000309190 ARID3CA6NKF2 412 aa8.04□□□□□ -1.12
CAST-201ENST00000309190 PHF23Q9BUL5 403 aaPredicted RBP8.01□□□□□ -1.13
CAST-201ENST00000309190 HRCP23327 699 aa8□□□□□ -1.13
CAST-201ENST00000309190 P3H3Q8IVL6 736 aa7.99□□□□□ -1.13
CAST-201ENST00000309190 WIZO95785 1651 aa7.97□□□□□ -1.13
CAST-201ENST00000309190 BICRAQ9NZM4 1560 aa7.94□□□□□ -1.14
CAST-201ENST00000309190 BAZ1BQ9UIG0 1483 aaKnown RBP7.92□□□□□ -1.14
CAST-201ENST00000309190 UNC13AQ9UPW8 1703 aa7.92□□□□□ -1.14
CAST-201ENST00000309190 NESP48681 1621 aa7.9□□□□□ -1.15
CAST-201ENST00000309190 RTN4Q9NQC3 1192 aaKnown RBP7.89□□□□□ -1.15
CAST-201ENST00000309190 BAZ1AQ9NRL2 1556 aaPredicted RBP7.89□□□□□ -1.15
CAST-201ENST00000309190 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.86□□□□□ -1.15
CAST-201ENST00000309190 HNRNPUL2Q1KMD3 747 aaKnown RBP7.86□□□□□ -1.15
CAST-201ENST00000309190 ATAD2BQ9ULI0 1458 aa7.86□□□□□ -1.15
CAST-201ENST00000309190 CC2D2AQ9P2K1 1620 aa7.86□□□□□ -1.15
CAST-201ENST00000309190 CCDC88BA6NC98 1476 aa7.86□□□□□ -1.15
CAST-201ENST00000309190 ABCC8Q09428 1581 aa7.84□□□□□ -1.15
CAST-201ENST00000309190 ITGAEP38570 1179 aa7.83□□□□□ -1.16
CAST-201ENST00000309190 ERCC6Q03468 1493 aa7.82□□□□□ -1.16
CAST-201ENST00000309190 PCGF6Q9BYE7 350 aa7.82□□□□□ -1.16
CAST-201ENST00000309190 TDRD9Q8NDG6 1382 aaKnown RBP7.81□□□□□ -1.16
CAST-201ENST00000309190 SMARCA4P51532 1647 aa7.79□□□□□ -1.16
CAST-201ENST00000309190 KCNA4P22459 653 aa7.77□□□□□ -1.17
CAST-201ENST00000309190 PEG3Q9GZU2 1588 aa7.76□□□□□ -1.17
CAST-201ENST00000309190 SOGA1O94964 1423 aa7.76□□□□□ -1.17
CAST-201ENST00000309190 CSRNP3Q8WYN3 585 aa7.75□□□□□ -1.17
CAST-201ENST00000309190 SMARCA2P51531 1590 aa7.74□□□□□ -1.17
CAST-201ENST00000309190 RUSC2Q8N2Y8 1516 aa7.74□□□□□ -1.17
CAST-201ENST00000309190 CHMP7Q8WUX9 453 aaPredicted RBP7.73□□□□□ -1.17
CAST-201ENST00000309190 APLP2Q06481 763 aa7.73□□□□□ -1.17
CAST-201ENST00000309190 CADPSQ9ULU8 1353 aa7.71□□□□□ -1.17
CAST-201ENST00000309190 TOP2AP11388 1531 aaKnown RBP7.71□□□□□ -1.18
CAST-201ENST00000309190 WRNQ14191 1432 aaPredicted RBP eCLIP7.7□□□□□ -1.18
CAST-201ENST00000309190 RAD54L2Q9Y4B4 1467 aa7.69□□□□□ -1.18
CAST-201ENST00000309190 CUX2O14529 1486 aa7.66□□□□□ -1.18
CAST-201ENST00000309190 SENP3Q9H4L4 574 aaPredicted RBP7.66□□□□□ -1.18
CAST-201ENST00000309190 MYT1LQ9UL68 1186 aa7.66□□□□□ -1.18
CAST-201ENST00000309190 NCAPD3P42695 1498 aa7.66□□□□□ -1.18
CAST-201ENST00000309190 AQRO60306 1485 aaKnown RBP eCLIP7.65□□□□□ -1.192e-6■■■■□ 24.4
CAST-201ENST00000309190 FANCD2Q9BXW9 1451 aa7.64□□□□□ -1.19
CAST-201ENST00000309190 KCNH8Q96L42 1107 aa7.64□□□□□ -1.19
CAST-201ENST00000309190 TRIM26Q12899 539 aaPredicted RBP7.62□□□□□ -1.19
CAST-201ENST00000309190 CYB5RLQ6IPT4 315 aa7.61□□□□□ -1.19
CAST-201ENST00000309190 ZNF777Q9ULD5 760 aaPredicted RBP7.61□□□□□ -1.19
CAST-201ENST00000309190 PDS5BQ9NTI5 1447 aa7.59□□□□□ -1.19
CAST-201ENST00000309190 KIF21BO75037 1637 aa7.59□□□□□ -1.19
CAST-201ENST00000309190 PRKCSHP14314 528 aaPredicted RBP7.58□□□□□ -1.2
CAST-201ENST00000309190 FAM50AQ14320 339 aaKnown RBP7.58□□□□□ -1.2
CAST-201ENST00000309190 CEP164Q9UPV0 1460 aa7.56□□□□□ -1.2
CAST-201ENST00000309190 BIVM-ERCC5R4GMW8 1640 aa7.56□□□□□ -1.2
CAST-201ENST00000309190 TRHP20396 242 aaPredicted RBP7.55□□□□□ -1.2
CAST-201ENST00000309190 CHIC2Q9UKJ5 165 aa7.54□□□□□ -1.2
CAST-201ENST00000309190 PRDM2Q13029 1718 aa7.54□□□□□ -1.2
CAST-201ENST00000309190 FGD5Q6ZNL6 1462 aa7.53□□□□□ -1.2
CAST-201ENST00000309190 ZNF608Q9ULD9 1512 aaPredicted RBP7.53□□□□□ -1.2
CAST-201ENST00000309190 SYNJ1O43426 1573 aa7.53□□□□□ -1.2
CAST-201ENST00000309190 CARMIL1Q5VZK9 1371 aa7.53□□□□□ -1.2
CAST-201ENST00000309190 CFTRP13569 1480 aa7.52□□□□□ -1.21
CAST-201ENST00000309190 AMER1Q5JTC6 1135 aaPredicted RBP7.52□□□□□ -1.21
CAST-201ENST00000309190 CNGB1Q14028 1251 aaPredicted RBP7.51□□□□□ -1.21
CAST-201ENST00000309190 RAPGEF2Q9Y4G8 1499 aa7.5□□□□□ -1.21
CAST-201ENST00000309190 KIF27Q86VH2 1401 aa7.49□□□□□ -1.21
CAST-201ENST00000309190 KANK4Q5T7N3 995 aaPredicted RBP7.49□□□□□ -1.21
CAST-201ENST00000309190 SCAF1Q9H7N4 1312 aaKnown RBP7.48□□□□□ -1.21
CAST-201ENST00000309190 CUX1P39880 1505 aa7.48□□□□□ -1.21
CAST-201ENST00000309190 JPH4Q96JJ6 628 aa7.48□□□□□ -1.21
CAST-201ENST00000309190 URB2Q14146 1524 aaKnown RBP7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 139.6 ms