RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 NISCHQ9Y2I1 1504 aa28.6■■■□□ 2.17
CLK3-201ENST00000345005 CCDC180Q9P1Z9 1646 aa24.95■■□□□ 1.58
CLK3-201ENST00000345005 ZCCHC6Q5VYS8 1495 aaKnown RBP24.03■■□□□ 1.44
CLK3-201ENST00000345005 DCAF1Q9Y4B6 1507 aa23.67■■□□□ 1.38
CLK3-201ENST00000345005 ABCC9O60706 1549 aa23.66■■□□□ 1.38
CLK3-201ENST00000345005 DCAF8L2P0C7V8 631 aa23.58■■□□□ 1.37
CLK3-201ENST00000345005 MYO15BQ96JP2 1530 aa23.36■■□□□ 1.33
CLK3-201ENST00000345005 SHROOM4Q9ULL8 1493 aa23.35■■□□□ 1.33
CLK3-201ENST00000345005 NACADO15069 1562 aa23.19■■□□□ 1.3
CLK3-201ENST00000345005 RB1CC1Q8TDY2 1594 aa22.97■■□□□ 1.27
CLK3-201ENST00000345005 SCRIBQ14160 1630 aa22.9■■□□□ 1.26
CLK3-201ENST00000345005 SUPT5HO00267 1087 aaKnown RBP22.56■■□□□ 1.2
CLK3-201ENST00000345005 UNC13AQ9UPW8 1703 aa22.56■■□□□ 1.2
CLK3-201ENST00000345005 BICRAQ9NZM4 1560 aa22.24■■□□□ 1.15
CLK3-201ENST00000345005 RSF1Q96T23 1441 aaPredicted RBP22.2■■□□□ 1.14
CLK3-201ENST00000345005 CECR2Q9BXF3 1484 aa22.18■■□□□ 1.14
CLK3-201ENST00000345005 PABPN1Q86U42 306 aaKnown RBP eCLIP22.09■■□□□ 1.133e-7■□□□□ 9.5
CLK3-201ENST00000345005 BAZ1AQ9NRL2 1556 aaPredicted RBP22.09■■□□□ 1.13
CLK3-201ENST00000345005 MROH2BQ7Z745 1585 aa22.08■■□□□ 1.13
CLK3-201ENST00000345005 SMARCA4P51532 1647 aa21.98■■□□□ 1.11
CLK3-201ENST00000345005 DNAJC5BQ9UF47 199 aa21.98■■□□□ 1.11
CLK3-201ENST00000345005 WIZO95785 1651 aa21.94■■□□□ 1.1
CLK3-201ENST00000345005 PEG3Q9GZU2 1588 aa21.71■■□□□ 1.07
CLK3-201ENST00000345005 TOP2AP11388 1531 aaKnown RBP21.71■■□□□ 1.07
CLK3-201ENST00000345005 CHIC1Q5VXU3 224 aa21.65■■□□□ 1.06
CLK3-201ENST00000345005 SMARCA2P51531 1590 aa21.6■■□□□ 1.05
CLK3-201ENST00000345005 ATAD2BQ9ULI0 1458 aa21.57■■□□□ 1.04
CLK3-201ENST00000345005 EIF4G1Q04637 1599 aaKnown RBP21.56■■□□□ 1.04
CLK3-201ENST00000345005 CCDC88BA6NC98 1476 aa21.48■■□□□ 1.03
CLK3-201ENST00000345005 BAZ1BQ9UIG0 1483 aaKnown RBP21.46■■□□□ 1.03
CLK3-201ENST00000345005 NCAPD3P42695 1498 aa21.38■■□□□ 1.01
CLK3-201ENST00000345005 CC2D2AQ9P2K1 1620 aa21.37■■□□□ 1.01
CLK3-201ENST00000345005 HMGXB3Q12766 1538 aa21.37■■□□□ 1.01
CLK3-201ENST00000345005 TRIM41Q8WV44 630 aa21.23■□□□□ 0.99
CLK3-201ENST00000345005 ABCC8Q09428 1581 aa21.04■□□□□ 0.96
CLK3-201ENST00000345005 PRDM2Q13029 1718 aa20.93■□□□□ 0.94
CLK3-201ENST00000345005 CFTRP13569 1480 aa20.92■□□□□ 0.94
CLK3-201ENST00000345005 WRNQ14191 1432 aaPredicted RBP eCLIP20.91■□□□□ 0.94
CLK3-201ENST00000345005 CADPSQ9ULU8 1353 aa20.83■□□□□ 0.92
CLK3-201ENST00000345005 LOC105371045A0A1W2PR82 267 aa20.82■□□□□ 0.92
CLK3-201ENST00000345005 SYNJ1O43426 1573 aa20.82■□□□□ 0.92
CLK3-201ENST00000345005 FAM9AQ8IZU1 332 aaPredicted RBP20.81■□□□□ 0.92
CLK3-201ENST00000345005 TOP2BQ02880 1626 aa20.76■□□□□ 0.91
CLK3-201ENST00000345005 BIVM-ERCC5R4GMW8 1640 aa20.75■□□□□ 0.91
CLK3-201ENST00000345005 EEA1Q15075 1411 aa20.7■□□□□ 0.9
CLK3-201ENST00000345005 LAMC3Q9Y6N6 1575 aa20.66■□□□□ 0.9
CLK3-201ENST00000345005 SOGA1O94964 1423 aa20.66■□□□□ 0.9
CLK3-201ENST00000345005 CUX1P39880 1505 aa20.64■□□□□ 0.9
CLK3-201ENST00000345005 FANCD2Q9BXW9 1451 aa20.6■□□□□ 0.89
CLK3-201ENST00000345005 NESP48681 1621 aa20.59■□□□□ 0.89
CLK3-201ENST00000345005 RUSC2Q8N2Y8 1516 aa20.58■□□□□ 0.88
CLK3-201ENST00000345005 CSRNP3Q8WYN3 585 aa20.56■□□□□ 0.88
CLK3-201ENST00000345005 PDS5BQ9NTI5 1447 aa20.48■□□□□ 0.87
CLK3-201ENST00000345005 EHMT2Q96KQ7 1210 aa20.48■□□□□ 0.87
CLK3-201ENST00000345005 HRCP23327 699 aa20.47■□□□□ 0.87
CLK3-201ENST00000345005 CEP164Q9UPV0 1460 aa20.47■□□□□ 0.87
CLK3-201ENST00000345005 DNMBPQ6XZF7 1577 aa20.46■□□□□ 0.87
CLK3-201ENST00000345005 KIF21BO75037 1637 aa20.43■□□□□ 0.86
CLK3-201ENST00000345005 KIF21AQ7Z4S6 1674 aa20.41■□□□□ 0.86
CLK3-201ENST00000345005 FGD5Q6ZNL6 1462 aa20.41■□□□□ 0.86
CLK3-201ENST00000345005 TOPBP1Q92547 1522 aa20.4■□□□□ 0.86
CLK3-201ENST00000345005 GOLGA3Q08378 1498 aa20.39■□□□□ 0.86
CLK3-201ENST00000345005 KIF27Q86VH2 1401 aa20.39■□□□□ 0.85
CLK3-201ENST00000345005 TNIKQ9UKE5 1360 aa20.36■□□□□ 0.85
CLK3-201ENST00000345005 ERCC6Q03468 1493 aa20.35■□□□□ 0.85
CLK3-201ENST00000345005 URB2Q14146 1524 aaKnown RBP20.33■□□□□ 0.84
CLK3-201ENST00000345005 UBTFP17480 764 aaKnown RBP20.32■□□□□ 0.84
CLK3-201ENST00000345005 CUX2O14529 1486 aa20.29■□□□□ 0.84
CLK3-201ENST00000345005 POLA1P09884 1462 aaPredicted RBP20.29■□□□□ 0.84
CLK3-201ENST00000345005 ERICH3Q5RHP9 1530 aa20.27■□□□□ 0.84
CLK3-201ENST00000345005 PRXQ9BXM0 1461 aa20.25■□□□□ 0.83
CLK3-201ENST00000345005 RAPGEF2Q9Y4G8 1499 aa20.24■□□□□ 0.83
CLK3-201ENST00000345005 ABCA10Q8WWZ4 1543 aa20.24■□□□□ 0.83
CLK3-201ENST00000345005 CEP162Q5TB80 1403 aa20.23■□□□□ 0.83
CLK3-201ENST00000345005 RAD54L2Q9Y4B4 1467 aa20.21■□□□□ 0.83
CLK3-201ENST00000345005 MRC2Q9UBG0 1479 aa20.19■□□□□ 0.82
CLK3-201ENST00000345005 WDR97A6NE52 1622 aa20.19■□□□□ 0.82
CLK3-201ENST00000345005 IGF1RP08069 1367 aa20.18■□□□□ 0.82
CLK3-201ENST00000345005 THOC2Q8NI27 1593 aaKnown RBP20.14■□□□□ 0.81
CLK3-201ENST00000345005 TARBP1Q13395 1621 aaKnown RBP20.1■□□□□ 0.81
CLK3-201ENST00000345005 CARMIL1Q5VZK9 1371 aa20.1■□□□□ 0.81
CLK3-201ENST00000345005 WDR62O43379 1518 aa20.09■□□□□ 0.81
CLK3-201ENST00000345005 PCGF6Q9BYE7 350 aa20.09■□□□□ 0.81
CLK3-201ENST00000345005 ABCA5Q8WWZ7 1642 aa20.08■□□□□ 0.8
CLK3-201ENST00000345005 CUL7Q14999 1698 aa20.08■□□□□ 0.8
CLK3-201ENST00000345005 CLIP1P30622 1438 aa20.07■□□□□ 0.8
CLK3-201ENST00000345005 GAPVD1Q14C86 1478 aa20.03■□□□□ 0.8
CLK3-201ENST00000345005 TDRD9Q8NDG6 1382 aaKnown RBP20.01■□□□□ 0.79
CLK3-201ENST00000345005 TRIM26Q12899 539 aaPredicted RBP19.99■□□□□ 0.79
CLK3-201ENST00000345005 PELP1Q8IZL8 1130 aaKnown RBP19.99■□□□□ 0.79
CLK3-201ENST00000345005 IFT140Q96RY7 1462 aa19.98■□□□□ 0.79
CLK3-201ENST00000345005 PBRM1Q86U86 1689 aa19.95■□□□□ 0.78
CLK3-201ENST00000345005 RANGAP1P46060 587 aaPredicted RBP19.9■□□□□ 0.78
CLK3-201ENST00000345005 VPS8Q8N3P4 1428 aa19.9■□□□□ 0.78
CLK3-201ENST00000345005 CTTNBP2Q8WZ74 1663 aa19.89■□□□□ 0.77
CLK3-201ENST00000345005 DNAJC5Q9H3Z4 198 aa19.88■□□□□ 0.77
CLK3-201ENST00000345005 AQRO60306 1485 aaKnown RBP eCLIP19.87■□□□□ 0.771e-7■■■■■ 33.5
CLK3-201ENST00000345005 GRIN2BQ13224 1484 aa19.85■□□□□ 0.77
CLK3-201ENST00000345005 ARAP1Q96P48 1450 aa19.84■□□□□ 0.77
CLK3-201ENST00000345005 ZNF608Q9ULD9 1512 aaPredicted RBP19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms