RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 NISCHQ9Y2I1 1504 aa28.03■■■□□ 2.08
CLK3-206ENST00000562078 CCDC180Q9P1Z9 1646 aa24.52■■□□□ 1.52
CLK3-206ENST00000562078 ZCCHC6Q5VYS8 1495 aaKnown RBP23.53■■□□□ 1.36
CLK3-206ENST00000562078 ABCC9O60706 1549 aa23.29■■□□□ 1.32
CLK3-206ENST00000562078 DCAF8L2P0C7V8 631 aa23.28■■□□□ 1.32
CLK3-206ENST00000562078 DCAF1Q9Y4B6 1507 aa23.14■■□□□ 1.29
CLK3-206ENST00000562078 SHROOM4Q9ULL8 1493 aa23.12■■□□□ 1.29
CLK3-206ENST00000562078 MYO15BQ96JP2 1530 aa22.88■■□□□ 1.25
CLK3-206ENST00000562078 NACADO15069 1562 aa22.82■■□□□ 1.24
CLK3-206ENST00000562078 RB1CC1Q8TDY2 1594 aa22.69■■□□□ 1.22
CLK3-206ENST00000562078 SCRIBQ14160 1630 aa22.59■■□□□ 1.21
CLK3-206ENST00000562078 HRCP23327 699 aa22.47■■□□□ 1.19
CLK3-206ENST00000562078 SUPT5HO00267 1087 aaKnown RBP22.42■■□□□ 1.18
CLK3-206ENST00000562078 PELP1Q8IZL8 1130 aaKnown RBP22.34■■□□□ 1.17
CLK3-206ENST00000562078 UNC13AQ9UPW8 1703 aa22.28■■□□□ 1.16
CLK3-206ENST00000562078 PPARGC1BQ86YN6 1023 aaKnown RBP22.08■■□□□ 1.13
CLK3-206ENST00000562078 BICRAQ9NZM4 1560 aa21.97■■□□□ 1.11
CLK3-206ENST00000562078 PABPN1Q86U42 306 aaKnown RBP eCLIP21.93■■□□□ 1.13e-7■□□□□ 9.5
CLK3-206ENST00000562078 PCGF6Q9BYE7 350 aa21.8■■□□□ 1.08
CLK3-206ENST00000562078 CECR2Q9BXF3 1484 aa21.8■■□□□ 1.08
CLK3-206ENST00000562078 RSF1Q96T23 1441 aaPredicted RBP21.7■■□□□ 1.06
CLK3-206ENST00000562078 BAZ1AQ9NRL2 1556 aaPredicted RBP21.67■■□□□ 1.06
CLK3-206ENST00000562078 MROH2BQ7Z745 1585 aa21.67■■□□□ 1.06
CLK3-206ENST00000562078 CHIC1Q5VXU3 224 aa21.62■■□□□ 1.05
CLK3-206ENST00000562078 SMARCA4P51532 1647 aa21.6■■□□□ 1.05
CLK3-206ENST00000562078 SCAF1Q9H7N4 1312 aaKnown RBP21.6■■□□□ 1.05
CLK3-206ENST00000562078 MYT1Q01538 1121 aa21.57■■□□□ 1.04
CLK3-206ENST00000562078 WIZO95785 1651 aa21.54■■□□□ 1.04
CLK3-206ENST00000562078 EIF4G1Q04637 1599 aaKnown RBP21.34■■□□□ 1.01
CLK3-206ENST00000562078 PEG3Q9GZU2 1588 aa21.29■■□□□ 1
CLK3-206ENST00000562078 TOP2AP11388 1531 aaKnown RBP21.27■■□□□ 1
CLK3-206ENST00000562078 SMARCA2P51531 1590 aa21.24■□□□□ 0.99
CLK3-206ENST00000562078 ATAD2BQ9ULI0 1458 aa21.23■□□□□ 0.99
CLK3-206ENST00000562078 BAZ1BQ9UIG0 1483 aaKnown RBP21.15■□□□□ 0.98
CLK3-206ENST00000562078 CC2D2AQ9P2K1 1620 aa21.07■□□□□ 0.96
CLK3-206ENST00000562078 CCDC88BA6NC98 1476 aa21.04■□□□□ 0.96
CLK3-206ENST00000562078 NCAPD3P42695 1498 aa21.03■□□□□ 0.96
CLK3-206ENST00000562078 HMGXB3Q12766 1538 aa21.03■□□□□ 0.96
CLK3-206ENST00000562078 TRIM41Q8WV44 630 aa20.96■□□□□ 0.95
CLK3-206ENST00000562078 LOC105371045A0A1W2PR82 267 aa20.9■□□□□ 0.94
CLK3-206ENST00000562078 TRIM26Q12899 539 aaPredicted RBP20.88■□□□□ 0.93
CLK3-206ENST00000562078 ACIN1Q9UKV3 1341 aaKnown RBP20.85■□□□□ 0.93
CLK3-206ENST00000562078 ZEB1P37275 1124 aaPredicted RBP20.82■□□□□ 0.92
CLK3-206ENST00000562078 NEUROD1Q13562 356 aa20.82■□□□□ 0.92
CLK3-206ENST00000562078 GTF3C3Q9Y5Q9 886 aa20.74■□□□□ 0.91
CLK3-206ENST00000562078 FAM9AQ8IZU1 332 aaPredicted RBP20.72■□□□□ 0.91
CLK3-206ENST00000562078 ABCC8Q09428 1581 aa20.71■□□□□ 0.91
CLK3-206ENST00000562078 CFTRP13569 1480 aa20.56■□□□□ 0.88
CLK3-206ENST00000562078 PRDM2Q13029 1718 aa20.55■□□□□ 0.88
CLK3-206ENST00000562078 DNAJC5BQ9UF47 199 aa20.53■□□□□ 0.88
CLK3-206ENST00000562078 EHMT2Q96KQ7 1210 aa20.52■□□□□ 0.88
CLK3-206ENST00000562078 CADPSQ9ULU8 1353 aa20.51■□□□□ 0.87
CLK3-206ENST00000562078 WRNQ14191 1432 aaPredicted RBP eCLIP20.47■□□□□ 0.87
CLK3-206ENST00000562078 CENPBP07199 599 aaPredicted RBP20.45■□□□□ 0.86
CLK3-206ENST00000562078 SYNJ1O43426 1573 aa20.41■□□□□ 0.86
CLK3-206ENST00000562078 NESP48681 1621 aa20.4■□□□□ 0.86
CLK3-206ENST00000562078 LAMC3Q9Y6N6 1575 aa20.39■□□□□ 0.85
CLK3-206ENST00000562078 TTBK1Q5TCY1 1321 aaPredicted RBP20.36■□□□□ 0.85
CLK3-206ENST00000562078 SOGA1O94964 1423 aa20.35■□□□□ 0.85
CLK3-206ENST00000562078 FANCD2Q9BXW9 1451 aa20.31■□□□□ 0.84
CLK3-206ENST00000562078 TOP2BQ02880 1626 aa20.31■□□□□ 0.84
CLK3-206ENST00000562078 BIVM-ERCC5R4GMW8 1640 aa20.31■□□□□ 0.84
CLK3-206ENST00000562078 BCL11AQ9H165 835 aa20.29■□□□□ 0.84
CLK3-206ENST00000562078 RUSC2Q8N2Y8 1516 aa20.28■□□□□ 0.84
CLK3-206ENST00000562078 CUX1P39880 1505 aa20.27■□□□□ 0.84
CLK3-206ENST00000562078 EEA1Q15075 1411 aa20.26■□□□□ 0.83
CLK3-206ENST00000562078 PDS5BQ9NTI5 1447 aa20.22■□□□□ 0.83
CLK3-206ENST00000562078 DIEXFQ68CQ4 756 aaKnown RBP20.22■□□□□ 0.83
CLK3-206ENST00000562078 CEP164Q9UPV0 1460 aa20.22■□□□□ 0.83
CLK3-206ENST00000562078 KIF21AQ7Z4S6 1674 aa20.21■□□□□ 0.83
CLK3-206ENST00000562078 CSRNP3Q8WYN3 585 aa20.16■□□□□ 0.82
CLK3-206ENST00000562078 DNMBPQ6XZF7 1577 aa20.13■□□□□ 0.81
CLK3-206ENST00000562078 GOLGA3Q08378 1498 aa20.09■□□□□ 0.81
CLK3-206ENST00000562078 CEP162Q5TB80 1403 aa20.09■□□□□ 0.81
CLK3-206ENST00000562078 TOPBP1Q92547 1522 aa20.08■□□□□ 0.81
CLK3-206ENST00000562078 FGD5Q6ZNL6 1462 aa20.08■□□□□ 0.8
CLK3-206ENST00000562078 KIF21BO75037 1637 aa20.08■□□□□ 0.8
CLK3-206ENST00000562078 TNIKQ9UKE5 1360 aa20.07■□□□□ 0.8
CLK3-206ENST00000562078 URB2Q14146 1524 aaKnown RBP20.06■□□□□ 0.8
CLK3-206ENST00000562078 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.02■□□□□ 0.8
CLK3-206ENST00000562078 UBTFP17480 764 aaKnown RBP20.02■□□□□ 0.8
CLK3-206ENST00000562078 YTHDC1Q96MU7 727 aaKnown RBP20.02■□□□□ 0.8
CLK3-206ENST00000562078 ERCC6Q03468 1493 aa19.99■□□□□ 0.79
CLK3-206ENST00000562078 POLA1P09884 1462 aaPredicted RBP19.98■□□□□ 0.79
CLK3-206ENST00000562078 MRC2Q9UBG0 1479 aa19.97■□□□□ 0.79
CLK3-206ENST00000562078 KIF27Q86VH2 1401 aa19.95■□□□□ 0.78
CLK3-206ENST00000562078 CCER1Q8TC90 406 aaPredicted RBP19.95■□□□□ 0.78
CLK3-206ENST00000562078 ANP32EQ9BTT0 268 aa19.94■□□□□ 0.78
CLK3-206ENST00000562078 CUX2O14529 1486 aa19.94■□□□□ 0.78
CLK3-206ENST00000562078 RAD54L2Q9Y4B4 1467 aa19.93■□□□□ 0.78
CLK3-206ENST00000562078 RAPGEF2Q9Y4G8 1499 aa19.91■□□□□ 0.78
CLK3-206ENST00000562078 PRKCSHP14314 528 aaPredicted RBP19.86■□□□□ 0.77
CLK3-206ENST00000562078 WDR62O43379 1518 aa19.86■□□□□ 0.77
CLK3-206ENST00000562078 ABCA10Q8WWZ4 1543 aa19.86■□□□□ 0.77
CLK3-206ENST00000562078 WDR97A6NE52 1622 aa19.86■□□□□ 0.77
CLK3-206ENST00000562078 THOC2Q8NI27 1593 aaKnown RBP19.85■□□□□ 0.77
CLK3-206ENST00000562078 ERICH3Q5RHP9 1530 aa19.81■□□□□ 0.76
CLK3-206ENST00000562078 CLIP1P30622 1438 aa19.81■□□□□ 0.76
CLK3-206ENST00000562078 TARBP1Q13395 1621 aaKnown RBP19.79■□□□□ 0.76
CLK3-206ENST00000562078 PRXQ9BXM0 1461 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms