RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 NISCHQ9Y2I1 1504 aa29.23■■■□□ 2.27
CLK3-203ENST00000454830 CCDC180Q9P1Z9 1646 aa25■■□□□ 1.59
CLK3-203ENST00000454830 DCAF8L2P0C7V8 631 aa24.99■■□□□ 1.59
CLK3-203ENST00000454830 SHROOM4Q9ULL8 1493 aa24.88■■□□□ 1.57
CLK3-203ENST00000454830 ZCCHC6Q5VYS8 1495 aaKnown RBP24.56■■□□□ 1.52
CLK3-203ENST00000454830 SUPT5HO00267 1087 aaKnown RBP24.21■■□□□ 1.47
CLK3-203ENST00000454830 ABCC9O60706 1549 aa23.98■■□□□ 1.43
CLK3-203ENST00000454830 DCAF1Q9Y4B6 1507 aa23.85■■□□□ 1.41
CLK3-203ENST00000454830 SCRIBQ14160 1630 aa23.55■■□□□ 1.36
CLK3-203ENST00000454830 MYO15BQ96JP2 1530 aa23.35■■□□□ 1.33
CLK3-203ENST00000454830 NACADO15069 1562 aa23.35■■□□□ 1.33
CLK3-203ENST00000454830 RB1CC1Q8TDY2 1594 aa23.16■■□□□ 1.3
CLK3-203ENST00000454830 CHIC1Q5VXU3 224 aa23.03■■□□□ 1.28
CLK3-203ENST00000454830 RSF1Q96T23 1441 aaPredicted RBP22.96■■□□□ 1.27
CLK3-203ENST00000454830 PABPN1Q86U42 306 aaKnown RBP eCLIP22.92■■□□□ 1.263e-7■□□□□ 9.5
CLK3-203ENST00000454830 CECR2Q9BXF3 1484 aa22.9■■□□□ 1.26
CLK3-203ENST00000454830 MROH2BQ7Z745 1585 aa22.72■■□□□ 1.23
CLK3-203ENST00000454830 UNC13AQ9UPW8 1703 aa22.57■■□□□ 1.2
CLK3-203ENST00000454830 WIZO95785 1651 aa22.55■■□□□ 1.2
CLK3-203ENST00000454830 TRIM41Q8WV44 630 aa22.54■■□□□ 1.2
CLK3-203ENST00000454830 BAZ1AQ9NRL2 1556 aaPredicted RBP22.53■■□□□ 1.2
CLK3-203ENST00000454830 FAM9AQ8IZU1 332 aaPredicted RBP22.46■■□□□ 1.19
CLK3-203ENST00000454830 LOC105371045A0A1W2PR82 267 aa22.43■■□□□ 1.18
CLK3-203ENST00000454830 EHMT2Q96KQ7 1210 aa22.39■■□□□ 1.17
CLK3-203ENST00000454830 BICRAQ9NZM4 1560 aa22.38■■□□□ 1.17
CLK3-203ENST00000454830 SMARCA4P51532 1647 aa22.36■■□□□ 1.17
CLK3-203ENST00000454830 TOP2AP11388 1531 aaKnown RBP22.18■■□□□ 1.14
CLK3-203ENST00000454830 CCDC88BA6NC98 1476 aa22.14■■□□□ 1.13
CLK3-203ENST00000454830 SMARCA2P51531 1590 aa22.02■■□□□ 1.12
CLK3-203ENST00000454830 BAZ1BQ9UIG0 1483 aaKnown RBP22■■□□□ 1.11
CLK3-203ENST00000454830 ATAD2BQ9ULI0 1458 aa21.99■■□□□ 1.11
CLK3-203ENST00000454830 ABCC8Q09428 1581 aa21.93■■□□□ 1.1
CLK3-203ENST00000454830 PCGF6Q9BYE7 350 aa21.93■■□□□ 1.1
CLK3-203ENST00000454830 PEG3Q9GZU2 1588 aa21.82■■□□□ 1.08
CLK3-203ENST00000454830 EIF4G1Q04637 1599 aaKnown RBP21.79■■□□□ 1.08
CLK3-203ENST00000454830 WRNQ14191 1432 aaPredicted RBP eCLIP21.69■■□□□ 1.06
CLK3-203ENST00000454830 UBTFP17480 764 aaKnown RBP21.65■■□□□ 1.06
CLK3-203ENST00000454830 SOGA1O94964 1423 aa21.64■■□□□ 1.06
CLK3-203ENST00000454830 NCAPD3P42695 1498 aa21.62■■□□□ 1.05
CLK3-203ENST00000454830 PPARGC1BQ86YN6 1023 aaKnown RBP21.62■■□□□ 1.05
CLK3-203ENST00000454830 CSRNP3Q8WYN3 585 aa21.6■■□□□ 1.05
CLK3-203ENST00000454830 TRIM26Q12899 539 aaPredicted RBP21.53■■□□□ 1.04
CLK3-203ENST00000454830 RUSC2Q8N2Y8 1516 aa21.53■■□□□ 1.04
CLK3-203ENST00000454830 HMGXB3Q12766 1538 aa21.52■■□□□ 1.04
CLK3-203ENST00000454830 RANGAP1P46060 587 aaPredicted RBP21.5■■□□□ 1.03
CLK3-203ENST00000454830 TTBK1Q5TCY1 1321 aaPredicted RBP21.5■■□□□ 1.03
CLK3-203ENST00000454830 SYNJ1O43426 1573 aa21.45■■□□□ 1.03
CLK3-203ENST00000454830 CC2D2AQ9P2K1 1620 aa21.42■■□□□ 1.02
CLK3-203ENST00000454830 EEA1Q15075 1411 aa21.41■■□□□ 1.02
CLK3-203ENST00000454830 HRCP23327 699 aa21.35■■□□□ 1.01
CLK3-203ENST00000454830 CEP162Q5TB80 1403 aa21.3■■□□□ 1
CLK3-203ENST00000454830 CFTRP13569 1480 aa21.3■■□□□ 1
CLK3-203ENST00000454830 CADPSQ9ULU8 1353 aa21.28■■□□□ 1
CLK3-203ENST00000454830 GOLGA3Q08378 1498 aa21.28■■□□□ 1
CLK3-203ENST00000454830 TNIKQ9UKE5 1360 aa21.27■■□□□ 1
CLK3-203ENST00000454830 TOP2BQ02880 1626 aa21.21■□□□□ 0.99
CLK3-203ENST00000454830 CEP164Q9UPV0 1460 aa21.21■□□□□ 0.99
CLK3-203ENST00000454830 CUX1P39880 1505 aa21.18■□□□□ 0.98
CLK3-203ENST00000454830 DNAJC5BQ9UF47 199 aa21.15■□□□□ 0.98
CLK3-203ENST00000454830 RAPGEF2Q9Y4G8 1499 aa21.12■□□□□ 0.97
CLK3-203ENST00000454830 APLP2Q06481 763 aa21.12■□□□□ 0.97
CLK3-203ENST00000454830 KIF27Q86VH2 1401 aa21.11■□□□□ 0.97
CLK3-203ENST00000454830 NESP48681 1621 aa21.1■□□□□ 0.97
CLK3-203ENST00000454830 CLIP1P30622 1438 aa21.08■□□□□ 0.97
CLK3-203ENST00000454830 BIVM-ERCC5R4GMW8 1640 aa21.08■□□□□ 0.96
CLK3-203ENST00000454830 FANCD2Q9BXW9 1451 aa21.07■□□□□ 0.96
CLK3-203ENST00000454830 CUX2O14529 1486 aa21.04■□□□□ 0.96
CLK3-203ENST00000454830 KIF21BO75037 1637 aa21.02■□□□□ 0.96
CLK3-203ENST00000454830 FGD5Q6ZNL6 1462 aa20.98■□□□□ 0.95
CLK3-203ENST00000454830 PRDM2Q13029 1718 aa20.91■□□□□ 0.94
CLK3-203ENST00000454830 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.89■□□□□ 0.94
CLK3-203ENST00000454830 PRXQ9BXM0 1461 aa20.89■□□□□ 0.93
CLK3-203ENST00000454830 CCER1Q8TC90 406 aaPredicted RBP20.88■□□□□ 0.93
CLK3-203ENST00000454830 RAD54L2Q9Y4B4 1467 aa20.87■□□□□ 0.93
CLK3-203ENST00000454830 IGF1RP08069 1367 aa20.85■□□□□ 0.93
CLK3-203ENST00000454830 CARMIL1Q5VZK9 1371 aa20.85■□□□□ 0.93
CLK3-203ENST00000454830 PDS5BQ9NTI5 1447 aa20.85■□□□□ 0.93
CLK3-203ENST00000454830 ZEB1P37275 1124 aaPredicted RBP20.83■□□□□ 0.92
CLK3-203ENST00000454830 VPS8Q8N3P4 1428 aa20.83■□□□□ 0.92
CLK3-203ENST00000454830 ATP1B4Q9UN42 357 aaPredicted RBP20.82■□□□□ 0.92
CLK3-203ENST00000454830 TOPBP1Q92547 1522 aa20.82■□□□□ 0.92
CLK3-203ENST00000454830 HNRNPUL2Q1KMD3 747 aaKnown RBP20.82■□□□□ 0.92
CLK3-203ENST00000454830 P3H3Q8IVL6 736 aa20.81■□□□□ 0.92
CLK3-203ENST00000454830 ERICH3Q5RHP9 1530 aa20.8■□□□□ 0.92
CLK3-203ENST00000454830 LAMC3Q9Y6N6 1575 aa20.79■□□□□ 0.92
CLK3-203ENST00000454830 POLA1P09884 1462 aaPredicted RBP20.78■□□□□ 0.92
CLK3-203ENST00000454830 DNMBPQ6XZF7 1577 aa20.78■□□□□ 0.92
CLK3-203ENST00000454830 TDRD9Q8NDG6 1382 aaKnown RBP20.76■□□□□ 0.91
CLK3-203ENST00000454830 URB2Q14146 1524 aaKnown RBP20.71■□□□□ 0.91
CLK3-203ENST00000454830 ARAP1Q96P48 1450 aa20.65■□□□□ 0.9
CLK3-203ENST00000454830 ABCA10Q8WWZ4 1543 aa20.64■□□□□ 0.89
CLK3-203ENST00000454830 KANK4Q5T7N3 995 aaPredicted RBP20.62■□□□□ 0.89
CLK3-203ENST00000454830 KIF21AQ7Z4S6 1674 aa20.6■□□□□ 0.89
CLK3-203ENST00000454830 ARHGAP35Q9NRY4 1499 aa20.59■□□□□ 0.89
CLK3-203ENST00000454830 ITGAEP38570 1179 aa20.58■□□□□ 0.88
CLK3-203ENST00000454830 GAPVD1Q14C86 1478 aa20.55■□□□□ 0.88
CLK3-203ENST00000454830 ERCC6Q03468 1493 aa20.54■□□□□ 0.88
CLK3-203ENST00000454830 AQRO60306 1485 aaKnown RBP eCLIP20.48■□□□□ 0.871e-7■■■■■ 33.5
CLK3-203ENST00000454830 MRC2Q9UBG0 1479 aa20.47■□□□□ 0.87
CLK3-203ENST00000454830 FHOD3Q2V2M9 1422 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms