Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 BCLAF1-223ENST00000628517 2512 ntTSL 5 BASIC8.23□□□□□ -1.096e-6■■■■■ 35.5
SF3B1O75533 ENTPD4-204ENST00000518471 790 ntTSL 420.59■□□□□ 0.895e-7■■■■■ 35.4
SF3B1O75533 NLRP1-211ENST00000574406 1750 ntTSL 216.97■□□□□ 0.315e-7■■■■■ 35.4
SF3B1O75533 ENTPD4-208ENST00000521321 579 ntTSL 416.89■□□□□ 0.295e-7■■■■■ 35.4
SF3B1O75533 COPG1-205ENST00000509889 599 ntTSL 510.86□□□□□ -0.675e-7■■■■■ 35.4
SF3B1O75533 CPED1-204ENST00000428526 2219 ntTSL 28.22□□□□□ -1.092e-6■■■■■ 35.4
SF3B1O75533 ULK1-204ENST00000540647 1211 ntTSL 221.68■■□□□ 1.063e-6■■■■■ 35.4
SF3B1O75533 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.67□□□□□ -1.54e-6■■■■■ 35.4
SF3B1O75533 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.654e-6■■■■■ 35.4
SF3B1O75533 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.694e-6■■■■■ 35.4
SF3B1O75533 BCLAF1-219ENST00000534269 4239 ntTSL 1 (best)4.29□□□□□ -1.724e-6■■■■■ 35.4
SF3B1O75533 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.774e-6■■■■■ 35.4
SF3B1O75533 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.29□□□□□ -1.884e-6■■■■■ 35.4
SF3B1O75533 BCLAF1-206ENST00000527613 5640 ntTSL 1 (best)3.19□□□□□ -1.94e-6■■■■■ 35.4
SF3B1O75533 BCLAF1-224ENST00000640069 7719 ntTSL 51.47□□□□□ -2.174e-6■■■■■ 35.4
SF3B1O75533 BCLAF1-217ENST00000533422 692 ntTSL 34.58□□□□□ -1.681e-6■■■■■ 35.4
SF3B1O75533 ZNF692-215ENST00000483791 681 ntTSL 320.08■□□□□ 0.819e-7■■■■■ 35.4
SF3B1O75533 ZNF692-230ENST00000534660 552 ntTSL 314.47□□□□□ -0.099e-7■■■■■ 35.4
SF3B1O75533 TNRC6A-211ENST00000566108 454 ntTSL 314.24□□□□□ -0.133e-6■■■■■ 35.4
SF3B1O75533 MVB12A-210ENST00000529490 480 ntTSL 416.63■□□□□ 0.257e-7■■■■■ 35.4
SF3B1O75533 BISPR-204ENST00000634675 1806 ntTSL 2 BASIC14.03□□□□□ -0.167e-7■■■■■ 35.4
SF3B1O75533 BISPR-207ENST00000634942 376 ntTSL 53.27□□□□□ -1.897e-7■■■■■ 35.4
SF3B1O75533 BISPR-201ENST00000634291 340 ntTSL 5-0.47□□□□□ -2.487e-7■■■■■ 35.4
SF3B1O75533 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.55■□□□□ 0.245e-15■■■■■ 35.3
SF3B1O75533 TUBB-207ENST00000396384 2823 ntTSL 3 BASIC10.64□□□□□ -0.715e-15■■■■■ 35.3
SF3B1O75533 TUBB-208ENST00000396389 2903 ntTSL 5 BASIC10.49□□□□□ -0.735e-15■■■■■ 35.3
SF3B1O75533 TUBB-205ENST00000327892 2670 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.735e-15■■■■■ 35.3
SF3B1O75533 LEPROT-201ENST00000371065 4622 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.352e-7■■■■■ 35.3
SF3B1O75533 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.93□□□□□ -1.462e-7■■■■■ 35.3
SF3B1O75533 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC25.38■■□□□ 1.651e-6■■■■■ 35.3
SF3B1O75533 CIRBP-231ENST00000591097 1507 ntTSL 1 (best)25.35■■□□□ 1.651e-6■■■■■ 35.3
SF3B1O75533 CIRBP-208ENST00000586548 1734 ntTSL 323.09■■□□□ 1.291e-6■■■■■ 35.3
SF3B1O75533 CIRBP-229ENST00000590704 1456 ntTSL 222.74■■□□□ 1.231e-6■■■■■ 35.3
SF3B1O75533 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC22.58■■□□□ 1.211e-6■■■■■ 35.3
SF3B1O75533 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC22.53■■□□□ 1.21e-6■■■■■ 35.3
SF3B1O75533 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC21.64■■□□□ 1.051e-6■■■■■ 35.3
SF3B1O75533 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC21.52■■□□□ 1.041e-6■■■■■ 35.3
SF3B1O75533 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.17■□□□□ 0.981e-6■■■■■ 35.3
SF3B1O75533 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.93■□□□□ 0.941e-6■■■■■ 35.3
SF3B1O75533 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.851e-6■■■■■ 35.3
SF3B1O75533 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.35■□□□□ 0.851e-6■■■■■ 35.3
SF3B1O75533 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC19.81■□□□□ 0.761e-6■■■■■ 35.3
SF3B1O75533 CIRBP-243ENST00000593128 796 ntTSL 319.77■□□□□ 0.761e-6■■■■■ 35.3
SF3B1O75533 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC18.12■□□□□ 0.491e-6■■■■■ 35.3
SF3B1O75533 CIRBP-241ENST00000593048 650 ntTSL 317.77■□□□□ 0.441e-6■■■■■ 35.3
SF3B1O75533 CIRBP-230ENST00000591055 928 ntTSL 217.4■□□□□ 0.381e-6■■■■■ 35.3
SF3B1O75533 CIRBP-218ENST00000588344 370 ntTSL 39.8□□□□□ -0.841e-6■■■■■ 35.3
SF3B1O75533 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC15.61■□□□□ 0.092e-7■■■■■ 35.3
SF3B1O75533 SNHG1-206ENST00000537925 1487 ntTSL 1 (best) BASIC12.39□□□□□ -0.432e-7■■■■■ 35.3
SF3B1O75533 SNHG1-209ENST00000538654 2768 ntTSL 29.34□□□□□ -0.912e-7■■■■■ 35.3
SF3B1O75533 SNHG1-223ENST00000545440 754 ntTSL 2 BASIC8.41□□□□□ -1.062e-7■■■■■ 35.3
SF3B1O75533 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC6.99□□□□□ -1.292e-7■■■■■ 35.3
SF3B1O75533 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC6.46□□□□□ -1.382e-7■■■■■ 35.3
SF3B1O75533 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.79□□□□□ -1.482e-7■■■■■ 35.3
SF3B1O75533 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.32□□□□□ -1.562e-7■■■■■ 35.3
SF3B1O75533 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC4.62□□□□□ -1.672e-7■■■■■ 35.3
SF3B1O75533 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.61□□□□□ -1.672e-7■■■■■ 35.3
SF3B1O75533 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.44□□□□□ -1.72e-7■■■■■ 35.3
SF3B1O75533 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.64□□□□□ -1.832e-7■■■■■ 35.3
SF3B1O75533 C6orf62-202ENST00000378119 4134 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.223e-6■■■■■ 35.3
SF3B1O75533 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC2.23□□□□□ -2.053e-6■■■■■ 35.3
SF3B1O75533 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.922e-6■■■■■ 35.3
SF3B1O75533 IDH1-203ENST00000415913 2441 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.512e-6■■■■■ 35.3
SF3B1O75533 IDH1-201ENST00000345146 2382 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.542e-6■■■■■ 35.3
SF3B1O75533 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.641e-6■■■■■ 35.2
SF3B1O75533 SNRNP70-204ENST00000595231 1673 ntTSL 1 (best)24.27■■□□□ 1.481e-6■■■■■ 35.2
SF3B1O75533 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC24.27■■□□□ 1.481e-6■■■■■ 35.2
SF3B1O75533 SNRNP70-209ENST00000601065 1757 ntTSL 323.49■■□□□ 1.351e-6■■■■■ 35.2
SF3B1O75533 SNRNP70-202ENST00000401730 3144 ntTSL 217.26■□□□□ 0.351e-6■■■■■ 35.2
SF3B1O75533 CCNI-205ENST00000507788 595 ntTSL 418.12■□□□□ 0.492e-6■■■■■ 35.2
SF3B1O75533 CCNI-209ENST00000515790 390 ntTSL 212.06□□□□□ -0.482e-6■■■■■ 35.2
SF3B1O75533 CCNI-207ENST00000513774 517 ntTSL 48.74□□□□□ -1.012e-6■■■■■ 35.2
SF3B1O75533 MAZ-216ENST00000616501 991 ntTSL 5 BASIC22.85■■□□□ 1.258e-8■■■■■ 35.2
SF3B1O75533 MAZ-207ENST00000563012 646 ntTSL 321.83■■□□□ 1.098e-8■■■■■ 35.2
SF3B1O75533 MAZ-204ENST00000561855 672 ntTSL 515.02■□□□□ -08e-8■■■■■ 35.2
SF3B1O75533 MAZ-206ENST00000562557 475 ntTSL 314.24□□□□□ -0.138e-8■■■■■ 35.2
SF3B1O75533 GABRE-204ENST00000462018 650 ntTSL 38.79□□□□□ -17e-7■■■■■ 35.2
SF3B1O75533 PTBP1-212ENST00000587136 583 ntTSL 322.97■■□□□ 1.275e-8■■■■■ 35.2
SF3B1O75533 PTBP1-215ENST00000589883 683 ntTSL 321.09■□□□□ 0.975e-8■■■■■ 35.2
SF3B1O75533 EIF3M-213ENST00000533439 749 ntTSL 516.31■□□□□ 0.25e-8■■■■■ 35.2
SF3B1O75533 TIAL1-204ENST00000412524 515 ntTSL 55.44□□□□□ -1.546e-7■■■■■ 35.2
SF3B1O75533 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.651e-6■■■■■ 35.2
SF3B1O75533 ZNF692-208ENST00000470787 1544 ntTSL 223.9■■□□□ 1.421e-6■■■■■ 35.2
SF3B1O75533 ZNF692-203ENST00000412341 1916 ntTSL 523.44■■□□□ 1.341e-6■■■■■ 35.2
SF3B1O75533 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.891e-6■■■■■ 35.2
SF3B1O75533 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.681e-6■■■■■ 35.2
SF3B1O75533 ZNF692-206ENST00000463519 2704 ntTSL 1 (best)15.34■□□□□ 0.051e-6■■■■■ 35.2
SF3B1O75533 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.37■■□□□ 1.016e-7■■■■■ 35.2
SF3B1O75533 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.826e-7■■■■■ 35.2
SF3B1O75533 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.766e-7■■■■■ 35.2
SF3B1O75533 TRMT2A-220ENST00000494820 1098 ntTSL 517.19■□□□□ 0.346e-7■■■■■ 35.2
SF3B1O75533 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.246e-7■■■■■ 35.2
SF3B1O75533 GART-213ENST00000467575 922 ntTSL 36.38□□□□□ -1.397e-7■■■■■ 35.2
SF3B1O75533 ATP1A1-209ENST00000491156 666 ntTSL 28.81□□□□□ -14e-7■■■■■ 35.1
SF3B1O75533 ZNF692-211ENST00000477070 1521 ntTSL 522.41■■□□□ 1.181e-6■■■■■ 35.1
SF3B1O75533 PKP4-214ENST00000492496 796 ntTSL 317.42■□□□□ 0.383e-6■■■■■ 35
SF3B1O75533 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.4■□□□□ 0.385e-6■■■■■ 35
SF3B1O75533 ACTR3-201ENST00000263238 6718 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.295e-6■■■■■ 35
SF3B1O75533 PICALM-201ENST00000356360 1958 ntTSL 5 BASIC8.62□□□□□ -1.032e-6■■■■■ 35
SF3B1O75533 FAM222B-209ENST00000581407 4161 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.422e-6■■■■■ 35
Retrieved 100 of 46,956 protein–RNA pairs in 3481.6 ms