Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.711e-15■■■■□ 21.1
SMNDC1O75940 CPNE1-216ENST00000437340 1755 ntTSL 1 (best)24.87■■□□□ 1.571e-15■■■■□ 21.1
SMNDC1O75940 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC24.7■■□□□ 1.541e-15■■■■□ 21.1
SMNDC1O75940 CPNE1-205ENST00000401607 1795 ntTSL 523.8■■□□□ 1.41e-15■■■■□ 21.1
SMNDC1O75940 CPNE1-204ENST00000397443 1928 ntAPPRIS P1 TSL 519.02■□□□□ 0.641e-15■■■■□ 21.1
SMNDC1O75940 CPNE1-224ENST00000483359 1975 ntTSL 515.86■□□□□ 0.131e-15■■■■□ 21.1
SMNDC1O75940 CPNE1-201ENST00000317677 1961 ntTSL 1 (best) BASIC13.94□□□□□ -0.181e-15■■■■□ 21.1
SMNDC1O75940 CPNE1-228ENST00000498814 550 ntTSL 313.84□□□□□ -0.191e-15■■■■□ 21.1
SMNDC1O75940 CPNE1-225ENST00000483495 1853 ntTSL 512.7□□□□□ -0.381e-15■■■■□ 21.1
SMNDC1O75940 CPNE1-209ENST00000415920 731 ntTSL 512.04□□□□□ -0.481e-15■■■■□ 21.1
SMNDC1O75940 CPNE1-221ENST00000462352 625 ntTSL 210.47□□□□□ -0.731e-15■■■■□ 21.1
SMNDC1O75940 CPNE1-222ENST00000473373 821 ntTSL 210.43□□□□□ -0.741e-15■■■■□ 21.1
SMNDC1O75940 PILRB-209ENST00000455145 902 ntTSL 512.77□□□□□ -0.375e-6■■■■□ 21.1
SMNDC1O75940 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.517e-7■■■■□ 21.1
SMNDC1O75940 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.757e-7■■■■□ 21.1
SMNDC1O75940 SLC16A3-213ENST00000582715 279 ntTSL 513.81□□□□□ -0.27e-7■■■■□ 21.1
SMNDC1O75940 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.57■□□□□ 0.723e-6■■■■□ 21.1
SMNDC1O75940 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.133e-6■■■■□ 21.1
SMNDC1O75940 NADK-204ENST00000378625 3653 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.483e-6■■■■□ 21.1
SMNDC1O75940 EIF4A1-208ENST00000578476 573 ntTSL 214.77□□□□□ -0.051e-6■■■■□ 21.1
SMNDC1O75940 EIF4A1-214ENST00000580461 909 ntTSL 211.5□□□□□ -0.571e-6■■■■□ 21.1
SMNDC1O75940 EIF4A1-213ENST00000579139 568 ntTSL 410.45□□□□□ -0.741e-6■■■■□ 21.1
SMNDC1O75940 EIF4A1-226ENST00000582848 591 ntTSL 310.38□□□□□ -0.751e-6■■■■□ 21.1
SMNDC1O75940 EIF4A1-223ENST00000582169 552 ntTSL 49.55□□□□□ -0.881e-6■■■■□ 21.1
SMNDC1O75940 EIF4A1-215ENST00000580886 562 ntTSL 28.72□□□□□ -1.011e-6■■■■□ 21.1
SMNDC1O75940 EIF4A1-231ENST00000584054 716 ntTSL 28.72□□□□□ -1.011e-6■■■■□ 21.1
SMNDC1O75940 EIF4A1-232ENST00000584712 782 ntTSL 28.55□□□□□ -1.041e-6■■■■□ 21.1
SMNDC1O75940 EIF4A1-212ENST00000579085 569 ntTSL 47.94□□□□□ -1.141e-6■■■■□ 21.1
SMNDC1O75940 EIF4A1-230ENST00000583899 665 ntTSL 36.17□□□□□ -1.421e-6■■■■□ 21.1
SMNDC1O75940 EIF4A1-224ENST00000582213 560 ntTSL 45.49□□□□□ -1.531e-6■■■■□ 21.1
SMNDC1O75940 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.97□□□□□ -0.011e-13■■■■□ 21
SMNDC1O75940 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.021e-13■■■■□ 21
SMNDC1O75940 AKNA-201ENST00000223791 4414 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.31e-13■■■■□ 21
SMNDC1O75940 AKNA-202ENST00000307564 7380 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.391e-13■■■■□ 21
SMNDC1O75940 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC31.64■■■□□ 2.662e-6■■■■□ 21
SMNDC1O75940 C10orf90-208ENST00000488181 1025 ntAPPRIS ALT2 TSL 210.89□□□□□ -0.672e-10■■■■□ 21
SMNDC1O75940 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.071e-7■■■■□ 21
SMNDC1O75940 MVD-209ENST00000565149 2352 ntTSL 1 (best)20.59■□□□□ 0.893e-7■■■■□ 21
SMNDC1O75940 TNFRSF12A-203ENST00000571351 1678 ntTSL 218.39■□□□□ 0.531e-7■■■■□ 21
SMNDC1O75940 TNFRSF12A-205ENST00000574699 583 ntTSL 217.41■□□□□ 0.381e-7■■■■□ 21
SMNDC1O75940 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.41■□□□□ 0.381e-7■■■■□ 21
SMNDC1O75940 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC13.76□□□□□ -0.211e-7■■■■□ 21
SMNDC1O75940 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC11.26□□□□□ -0.611e-7■■■■□ 21
SMNDC1O75940 RPS2-211ENST00000531065 1548 ntTSL 524.4■■□□□ 1.57e-25■■■■□ 21
SMNDC1O75940 RPS2-209ENST00000529806 993 ntTSL 3 BASIC23.86■■□□□ 1.417e-25■■■■□ 21
SMNDC1O75940 RPS2-205ENST00000527109 1030 ntTSL 1 (best)23.12■■□□□ 1.297e-25■■■■□ 21
SMNDC1O75940 RPS2-202ENST00000526522 924 ntTSL 2 BASIC23.12■■□□□ 1.297e-25■■■■□ 21
SMNDC1O75940 RPS2-206ENST00000527302 719 ntTSL 323.1■■□□□ 1.297e-25■■■■□ 21
SMNDC1O75940 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.277e-25■■■■□ 21
SMNDC1O75940 RPS2-210ENST00000530225 765 ntTSL 2 BASIC22.44■■□□□ 1.187e-25■■■■□ 21
SMNDC1O75940 RPS2-208ENST00000527871 1243 ntTSL 1 (best)21.89■■□□□ 1.097e-25■■■■□ 21
SMNDC1O75940 RPS2-215ENST00000533872 1114 ntTSL 521.81■■□□□ 1.087e-25■■■■□ 21
SMNDC1O75940 RPS2-213ENST00000533161 1186 ntTSL 1 (best)21.55■■□□□ 1.047e-25■■■■□ 21
SMNDC1O75940 ADARB1-212ENST00000496664 5033 ntTSL 1 (best)21.31■■□□□ 18e-9■■■■□ 21
SMNDC1O75940 ADARB1-203ENST00000389861 5031 ntTSL 1 (best)21.31■■□□□ 18e-9■■■■□ 21
SMNDC1O75940 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.31■■□□□ 18e-9■■■■□ 21
SMNDC1O75940 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.931e-12■■■■□ 21
SMNDC1O75940 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.881e-12■■■■□ 21
SMNDC1O75940 ADARB1-211ENST00000492414 4913 ntTSL 1 (best)20.34■□□□□ 0.858e-9■■■■□ 21
SMNDC1O75940 TRABD-205ENST00000463233 2404 ntTSL 1 (best)20.28■□□□□ 0.841e-12■■■■□ 21
SMNDC1O75940 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.658e-9■■■■□ 21
SMNDC1O75940 TRABD-206ENST00000472677 1661 ntTSL 1 (best)18.98■□□□□ 0.631e-12■■■■□ 21
SMNDC1O75940 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.591e-12■■■■□ 21
SMNDC1O75940 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.55■□□□□ 0.568e-9■■■■□ 21
SMNDC1O75940 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.561e-12■■■■□ 21
SMNDC1O75940 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.541e-12■■■■□ 21
SMNDC1O75940 RPS2-204ENST00000526908 638 ntTSL 218.32■□□□□ 0.527e-25■■■■□ 21
SMNDC1O75940 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC17.45■□□□□ 0.388e-9■■■■□ 21
SMNDC1O75940 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.358e-9■■■■□ 21
SMNDC1O75940 NEU4-216ENST00000494678 491 ntTSL 417.09■□□□□ 0.337e-7■■■■□ 21
SMNDC1O75940 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.74■□□□□ 0.278e-9■■■■□ 21
SMNDC1O75940 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.278e-9■■■■□ 21
SMNDC1O75940 RPS2-216ENST00000534461 734 ntTSL 216.43■□□□□ 0.227e-25■■■■□ 21
SMNDC1O75940 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.218e-9■■■■□ 21
SMNDC1O75940 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC14.91□□□□□ -0.028e-9■■■■□ 21
SMNDC1O75940 VAV2-204ENST00000472905 506 ntTSL 314.88□□□□□ -0.035e-6■■■■□ 21
SMNDC1O75940 RPL31-207ENST00000409711 2328 ntTSL 2 BASIC14.6□□□□□ -0.071e-12■■■■□ 21
SMNDC1O75940 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC14.1□□□□□ -0.158e-9■■■■□ 21
SMNDC1O75940 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC14.04□□□□□ -0.168e-9■■■■□ 21
SMNDC1O75940 PDCD6-203ENST00000505526 1484 ntTSL 1 (best)13.88□□□□□ -0.198e-9■■■■□ 21
SMNDC1O75940 ADARB1-214ENST00000629643 4583 ntTSL 5 BASIC12.95□□□□□ -0.348e-9■■■■□ 21
SMNDC1O75940 PDCD6-210ENST00000513582 3500 ntTSL 212.32□□□□□ -0.448e-9■■■■□ 21
SMNDC1O75940 PDCD6-204ENST00000506909 458 ntTSL 312.11□□□□□ -0.478e-9■■■■□ 21
SMNDC1O75940 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.528e-9■■■■□ 21
SMNDC1O75940 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC11.8□□□□□ -0.528e-9■■■■□ 21
SMNDC1O75940 PDCD6-209ENST00000512466 3763 ntTSL 211.08□□□□□ -0.648e-9■■■■□ 21
SMNDC1O75940 PDCD6-208ENST00000511482 878 ntTSL 510.8□□□□□ -0.688e-9■■■■□ 21
SMNDC1O75940 RPL31-201ENST00000264258 1865 ntAPPRIS P3 TSL 1 (best) BASIC10.16□□□□□ -0.781e-12■■■■□ 21
SMNDC1O75940 RPL31-203ENST00000409028 1110 ntTSL 2 BASIC9.85□□□□□ -0.831e-12■■■■□ 21
SMNDC1O75940 RPS2-203ENST00000526586 878 ntTSL 28.51□□□□□ -1.057e-25■■■■□ 21
SMNDC1O75940 RPL31-210ENST00000441435 717 ntTSL 28.51□□□□□ -1.051e-12■■■■□ 21
SMNDC1O75940 RPL31-204ENST00000409038 817 ntTSL 2 BASIC8.46□□□□□ -1.061e-12■■■■□ 21
SMNDC1O75940 RPS2-212ENST00000532746 931 ntTSL 38□□□□□ -1.137e-25■■■■□ 21
SMNDC1O75940 RPS2-214ENST00000533186 625 ntTSL 38□□□□□ -1.137e-25■■■■□ 21
SMNDC1O75940 PDCD6-205ENST00000507473 486 ntTSL 37.15□□□□□ -1.268e-9■■■■□ 21
SMNDC1O75940 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC7.15□□□□□ -1.261e-12■■■■□ 21
SMNDC1O75940 RPL31-209ENST00000419276 781 ntTSL 57.12□□□□□ -1.271e-12■■■■□ 21
SMNDC1O75940 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC5.85□□□□□ -1.471e-12■■■■□ 21
SMNDC1O75940 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.194e-48■■■■□ 20.9
SMNDC1O75940 RPL3-211ENST00000465618 2108 ntTSL 1 (best)13.45□□□□□ -0.264e-48■■■■□ 20.9
Retrieved 100 of 11,362 protein–RNA pairs in 199.8 ms