RNA–Protein interactions for RNA: ENST00000506909.5

PDCD6-204, Transcript of programmed cell death 6, humanhuman

TSL 3

Gene PDCD6, Length 458 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDCD6-204ENST00000506909 NISCHQ9Y2I1 1504 aa33.08■■■□□ 2.89
PDCD6-204ENST00000506909 CCDC180Q9P1Z9 1646 aa29.5■■■□□ 2.31
PDCD6-204ENST00000506909 ABCC9O60706 1549 aa28.79■■■□□ 2.2
PDCD6-204ENST00000506909 RB1CC1Q8TDY2 1594 aa27.74■■■□□ 2.03
PDCD6-204ENST00000506909 NACADO15069 1562 aa27.71■■■□□ 2.03
PDCD6-204ENST00000506909 DCAF8L2P0C7V8 631 aa27.58■■■□□ 2.01
PDCD6-204ENST00000506909 MYO15BQ96JP2 1530 aa27.56■■■□□ 2
PDCD6-204ENST00000506909 ZCCHC6Q5VYS8 1495 aaKnown RBP27.54■■■□□ 2
PDCD6-204ENST00000506909 DCAF1Q9Y4B6 1507 aa27.41■■□□□ 1.98
PDCD6-204ENST00000506909 DNAJC5BQ9UF47 199 aa27.4■■□□□ 1.98
PDCD6-204ENST00000506909 UNC13AQ9UPW8 1703 aa27.2■■□□□ 1.94
PDCD6-204ENST00000506909 BICRAQ9NZM4 1560 aa26.91■■□□□ 1.9
PDCD6-204ENST00000506909 PABPN1Q86U42 306 aaKnown RBP eCLIP26.87■■□□□ 1.89
PDCD6-204ENST00000506909 SCRIBQ14160 1630 aa26.82■■□□□ 1.88
PDCD6-204ENST00000506909 SHROOM4Q9ULL8 1493 aa26.63■■□□□ 1.85
PDCD6-204ENST00000506909 EIF4G1Q04637 1599 aaKnown RBP26.19■■□□□ 1.78
PDCD6-204ENST00000506909 DNAJC5Q9H3Z4 198 aa26.13■■□□□ 1.77
PDCD6-204ENST00000506909 CC2D2AQ9P2K1 1620 aa26.1■■□□□ 1.77
PDCD6-204ENST00000506909 CECR2Q9BXF3 1484 aa25.89■■□□□ 1.73
PDCD6-204ENST00000506909 SMARCA4P51532 1647 aa25.7■■□□□ 1.7
PDCD6-204ENST00000506909 BAZ1AQ9NRL2 1556 aaPredicted RBP25.65■■□□□ 1.7
PDCD6-204ENST00000506909 NCAPD3P42695 1498 aa25.55■■□□□ 1.68
PDCD6-204ENST00000506909 ATAD2BQ9ULI0 1458 aa25.53■■□□□ 1.68
PDCD6-204ENST00000506909 SMARCA2P51531 1590 aa25.53■■□□□ 1.68
PDCD6-204ENST00000506909 MROH2BQ7Z745 1585 aa25.48■■□□□ 1.67
PDCD6-204ENST00000506909 PEG3Q9GZU2 1588 aa25.47■■□□□ 1.67
PDCD6-204ENST00000506909 HMGXB3Q12766 1538 aa25.43■■□□□ 1.66
PDCD6-204ENST00000506909 BAZ1BQ9UIG0 1483 aaKnown RBP25.32■■□□□ 1.64
PDCD6-204ENST00000506909 WIZO95785 1651 aa25.23■■□□□ 1.63
PDCD6-204ENST00000506909 RSF1Q96T23 1441 aaPredicted RBP25.17■■□□□ 1.62
PDCD6-204ENST00000506909 TOP2AP11388 1531 aaKnown RBP24.94■■□□□ 1.58
PDCD6-204ENST00000506909 NESP48681 1621 aa24.91■■□□□ 1.58
PDCD6-204ENST00000506909 LAMC3Q9Y6N6 1575 aa24.91■■□□□ 1.58
PDCD6-204ENST00000506909 ERCC6Q03468 1493 aa24.82■■□□□ 1.56
PDCD6-204ENST00000506909 CADPSQ9ULU8 1353 aa24.79■■□□□ 1.56
PDCD6-204ENST00000506909 PDS5BQ9NTI5 1447 aa24.7■■□□□ 1.55
PDCD6-204ENST00000506909 KIF21AQ7Z4S6 1674 aa24.69■■□□□ 1.54
PDCD6-204ENST00000506909 CFTRP13569 1480 aa24.64■■□□□ 1.54
PDCD6-204ENST00000506909 CCDC88BA6NC98 1476 aa24.64■■□□□ 1.53
PDCD6-204ENST00000506909 CUX2O14529 1486 aa24.62■■□□□ 1.53
PDCD6-204ENST00000506909 THOC2Q8NI27 1593 aaKnown RBP24.59■■□□□ 1.53
PDCD6-204ENST00000506909 PRDM2Q13029 1718 aa24.56■■□□□ 1.52
PDCD6-204ENST00000506909 FANCD2Q9BXW9 1451 aa24.49■■□□□ 1.51
PDCD6-204ENST00000506909 TRIM41Q8WV44 630 aa24.48■■□□□ 1.51
PDCD6-204ENST00000506909 CEP164Q9UPV0 1460 aa24.47■■□□□ 1.51
PDCD6-204ENST00000506909 MRC2Q9UBG0 1479 aa24.45■■□□□ 1.5
PDCD6-204ENST00000506909 SUPT5HO00267 1087 aaKnown RBP24.44■■□□□ 1.5
PDCD6-204ENST00000506909 WDR62O43379 1518 aa24.38■■□□□ 1.49
PDCD6-204ENST00000506909 URB2Q14146 1524 aaKnown RBP24.25■■□□□ 1.47
PDCD6-204ENST00000506909 ABCC8Q09428 1581 aa24.14■■□□□ 1.45
PDCD6-204ENST00000506909 TOPBP1Q92547 1522 aa24.1■■□□□ 1.45
PDCD6-204ENST00000506909 DNMBPQ6XZF7 1577 aa24.09■■□□□ 1.45
PDCD6-204ENST00000506909 IFT140Q96RY7 1462 aa23.96■■□□□ 1.43
PDCD6-204ENST00000506909 CUX1P39880 1505 aa23.9■■□□□ 1.42
PDCD6-204ENST00000506909 POLA1P09884 1462 aaPredicted RBP23.89■■□□□ 1.42
PDCD6-204ENST00000506909 TARBP1Q13395 1621 aaKnown RBP23.88■■□□□ 1.41
PDCD6-204ENST00000506909 ZNF608Q9ULD9 1512 aaPredicted RBP23.84■■□□□ 1.41
PDCD6-204ENST00000506909 FGD5Q6ZNL6 1462 aa23.82■■□□□ 1.4
PDCD6-204ENST00000506909 SOGA1O94964 1423 aa23.79■■□□□ 1.4
PDCD6-204ENST00000506909 EIF4G3O43432 1585 aaKnown RBP23.78■■□□□ 1.4
PDCD6-204ENST00000506909 RAD54L2Q9Y4B4 1467 aa23.77■■□□□ 1.4
PDCD6-204ENST00000506909 BIVM-ERCC5R4GMW8 1640 aa23.73■■□□□ 1.39
PDCD6-204ENST00000506909 WRNQ14191 1432 aaPredicted RBP eCLIP23.73■■□□□ 1.395e-6■■■■■ 33.4
PDCD6-204ENST00000506909 TOP2BQ02880 1626 aa23.73■■□□□ 1.39
PDCD6-204ENST00000506909 WDR97A6NE52 1622 aa23.71■■□□□ 1.39
PDCD6-204ENST00000506909 AQRO60306 1485 aaKnown RBP eCLIP23.7■■□□□ 1.381e-6■■■■□ 25.2
PDCD6-204ENST00000506909 SYNJ1O43426 1573 aa23.68■■□□□ 1.38
PDCD6-204ENST00000506909 TDRD9Q8NDG6 1382 aaKnown RBP23.64■■□□□ 1.37
PDCD6-204ENST00000506909 ABCA10Q8WWZ4 1543 aa23.61■■□□□ 1.37
PDCD6-204ENST00000506909 OSCARQ8IYS5 282 aa23.58■■□□□ 1.37
PDCD6-204ENST00000506909 ABCA5Q8WWZ7 1642 aa23.54■■□□□ 1.36
PDCD6-204ENST00000506909 GAPVD1Q14C86 1478 aa23.53■■□□□ 1.36
PDCD6-204ENST00000506909 PBRM1Q86U86 1689 aa23.53■■□□□ 1.36
PDCD6-204ENST00000506909 CHD1O14646 1710 aa23.53■■□□□ 1.36
PDCD6-204ENST00000506909 GRIN2BQ13224 1484 aa23.52■■□□□ 1.36
PDCD6-204ENST00000506909 MAGI1Q96QZ7 1491 aaPredicted RBP23.49■■□□□ 1.35
PDCD6-204ENST00000506909 SNAPC4Q5SXM2 1469 aa23.48■■□□□ 1.35
PDCD6-204ENST00000506909 FBLN2P98095 1184 aa23.4■■□□□ 1.34
PDCD6-204ENST00000506909 SYNJ2O15056 1496 aa23.38■■□□□ 1.33
PDCD6-204ENST00000506909 AEBP2Q6ZN18 517 aaPredicted RBP23.36■■□□□ 1.33
PDCD6-204ENST00000506909 CHMP7Q8WUX9 453 aaPredicted RBP23.36■■□□□ 1.33
PDCD6-204ENST00000506909 ERICH3Q5RHP9 1530 aa23.34■■□□□ 1.33
PDCD6-204ENST00000506909 ADAMTS12P58397 1594 aa23.3■■□□□ 1.32
PDCD6-204ENST00000506909 FHAD1B1AJZ9 1412 aa23.25■■□□□ 1.31
PDCD6-204ENST00000506909 KIF27Q86VH2 1401 aa23.24■■□□□ 1.31
PDCD6-204ENST00000506909 CLASP1Q7Z460 1538 aa23.23■■□□□ 1.31
PDCD6-204ENST00000506909 RIMBP3CA6NJZ7 1639 aa23.22■■□□□ 1.31
PDCD6-204ENST00000506909 RIMBP3BA6NNM3 1639 aa23.22■■□□□ 1.31
PDCD6-204ENST00000506909 RIMBP3Q9UFD9 1639 aa23.22■■□□□ 1.31
PDCD6-204ENST00000506909 GRIN2AQ12879 1464 aa23.22■■□□□ 1.31
PDCD6-204ENST00000506909 ARHGEF11O15085 1522 aa23.19■■□□□ 1.3
PDCD6-204ENST00000506909 IGF1RP08069 1367 aa23.15■■□□□ 1.3
PDCD6-204ENST00000506909 CUL7Q14999 1698 aa23.14■■□□□ 1.29
PDCD6-204ENST00000506909 NUP160Q12769 1436 aa23.13■■□□□ 1.29
PDCD6-204ENST00000506909 CEP170Q5SW79 1584 aa23.11■■□□□ 1.29
PDCD6-204ENST00000506909 TRHP20396 242 aaPredicted RBP23.03■■□□□ 1.28
PDCD6-204ENST00000506909 CARMIL1Q5VZK9 1371 aa23.01■■□□□ 1.27
PDCD6-204ENST00000506909 RUSC2Q8N2Y8 1516 aa23■■□□□ 1.27
PDCD6-204ENST00000506909 SHROOM2Q13796 1616 aa23■■□□□ 1.27
PDCD6-204ENST00000506909 ARAP1Q96P48 1450 aa22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms