RNA–Protein interactions for RNA: ENST00000628729.2

PDCD6-214, Transcript of programmed cell death 6, humanhuman

TSL 5 BASIC

Gene PDCD6, Length 1,073 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDCD6-214ENST00000628729 NISCHQ9Y2I1 1504 aa41.74■■■■■ 4.27
PDCD6-214ENST00000628729 CCDC180Q9P1Z9 1646 aa37.44■■■■□ 3.58
PDCD6-214ENST00000628729 ABCC9O60706 1549 aa37.24■■■■□ 3.55
PDCD6-214ENST00000628729 RB1CC1Q8TDY2 1594 aa35.49■■■■□ 3.27
PDCD6-214ENST00000628729 NACADO15069 1562 aa35.28■■■■□ 3.24
PDCD6-214ENST00000628729 DCAF8L2P0C7V8 631 aa34.93■■■■□ 3.18
PDCD6-214ENST00000628729 MYO15BQ96JP2 1530 aa34.86■■■■□ 3.17
PDCD6-214ENST00000628729 UNC13AQ9UPW8 1703 aa34.85■■■■□ 3.17
PDCD6-214ENST00000628729 DNAJC5BQ9UF47 199 aa34.8■■■■□ 3.16
PDCD6-214ENST00000628729 ZCCHC6Q5VYS8 1495 aaKnown RBP34.67■■■■□ 3.14
PDCD6-214ENST00000628729 PABPN1Q86U42 306 aaKnown RBP eCLIP34.62■■■■□ 3.13
PDCD6-214ENST00000628729 BICRAQ9NZM4 1560 aa34.57■■■■□ 3.13
PDCD6-214ENST00000628729 DCAF1Q9Y4B6 1507 aa34.48■■■■□ 3.11
PDCD6-214ENST00000628729 SCRIBQ14160 1630 aa34.13■■■■□ 3.05
PDCD6-214ENST00000628729 SHROOM4Q9ULL8 1493 aa34.01■■■■□ 3.03
PDCD6-214ENST00000628729 CC2D2AQ9P2K1 1620 aa33.69■■■□□ 2.98
PDCD6-214ENST00000628729 EIF4G1Q04637 1599 aaKnown RBP33.65■■■□□ 2.98
PDCD6-214ENST00000628729 CECR2Q9BXF3 1484 aa33.5■■■□□ 2.95
PDCD6-214ENST00000628729 SMARCA4P51532 1647 aa32.57■■■□□ 2.8
PDCD6-214ENST00000628729 NCAPD3P42695 1498 aa32.56■■■□□ 2.8
PDCD6-214ENST00000628729 ATAD2BQ9ULI0 1458 aa32.51■■■□□ 2.79
PDCD6-214ENST00000628729 SMARCA2P51531 1590 aa32.41■■■□□ 2.78
PDCD6-214ENST00000628729 HMGXB3Q12766 1538 aa32.39■■■□□ 2.78
PDCD6-214ENST00000628729 BAZ1AQ9NRL2 1556 aaPredicted RBP32.36■■■□□ 2.77
PDCD6-214ENST00000628729 PEG3Q9GZU2 1588 aa32.26■■■□□ 2.75
PDCD6-214ENST00000628729 MROH2BQ7Z745 1585 aa32.2■■■□□ 2.75
PDCD6-214ENST00000628729 BAZ1BQ9UIG0 1483 aaKnown RBP32.17■■■□□ 2.74
PDCD6-214ENST00000628729 NESP48681 1621 aa32.08■■■□□ 2.73
PDCD6-214ENST00000628729 ERCC6Q03468 1493 aa32.07■■■□□ 2.72
PDCD6-214ENST00000628729 CUX2O14529 1486 aa32■■■□□ 2.71
PDCD6-214ENST00000628729 WIZO95785 1651 aa31.84■■■□□ 2.69
PDCD6-214ENST00000628729 LAMC3Q9Y6N6 1575 aa31.83■■■□□ 2.69
PDCD6-214ENST00000628729 THOC2Q8NI27 1593 aaKnown RBP31.79■■■□□ 2.68
PDCD6-214ENST00000628729 DNAJC5Q9H3Z4 198 aa31.74■■■□□ 2.67
PDCD6-214ENST00000628729 KIF21AQ7Z4S6 1674 aa31.72■■■□□ 2.67
PDCD6-214ENST00000628729 PDS5BQ9NTI5 1447 aa31.54■■■□□ 2.64
PDCD6-214ENST00000628729 CADPSQ9ULU8 1353 aa31.54■■■□□ 2.64
PDCD6-214ENST00000628729 RSF1Q96T23 1441 aaPredicted RBP31.53■■■□□ 2.64
PDCD6-214ENST00000628729 TOP2AP11388 1531 aaKnown RBP31.42■■■□□ 2.62
PDCD6-214ENST00000628729 MRC2Q9UBG0 1479 aa31.35■■■□□ 2.61
PDCD6-214ENST00000628729 WDR62O43379 1518 aa31.33■■■□□ 2.61
PDCD6-214ENST00000628729 CFTRP13569 1480 aa31.27■■■□□ 2.6
PDCD6-214ENST00000628729 CEP164Q9UPV0 1460 aa31.25■■■□□ 2.59
PDCD6-214ENST00000628729 FANCD2Q9BXW9 1451 aa31.23■■■□□ 2.59
PDCD6-214ENST00000628729 PRDM2Q13029 1718 aa31.07■■■□□ 2.56
PDCD6-214ENST00000628729 URB2Q14146 1524 aaKnown RBP31.03■■■□□ 2.56
PDCD6-214ENST00000628729 CCDC88BA6NC98 1476 aa31.02■■■□□ 2.56
PDCD6-214ENST00000628729 TOPBP1Q92547 1522 aa30.68■■■□□ 2.5
PDCD6-214ENST00000628729 ZNF608Q9ULD9 1512 aaPredicted RBP30.62■■■□□ 2.49
PDCD6-214ENST00000628729 DNMBPQ6XZF7 1577 aa30.59■■■□□ 2.49
PDCD6-214ENST00000628729 IFT140Q96RY7 1462 aa30.59■■■□□ 2.49
PDCD6-214ENST00000628729 AEBP2Q6ZN18 517 aaPredicted RBP30.53■■■□□ 2.48
PDCD6-214ENST00000628729 ABCC8Q09428 1581 aa30.5■■■□□ 2.47
PDCD6-214ENST00000628729 EIF4G3O43432 1585 aaKnown RBP30.49■■■□□ 2.47
PDCD6-214ENST00000628729 TARBP1Q13395 1621 aaKnown RBP30.47■■■□□ 2.47
PDCD6-214ENST00000628729 OSCARQ8IYS5 282 aa30.42■■■□□ 2.46
PDCD6-214ENST00000628729 POLA1P09884 1462 aaPredicted RBP30.39■■■□□ 2.46
PDCD6-214ENST00000628729 TRIM41Q8WV44 630 aa30.39■■■□□ 2.46
PDCD6-214ENST00000628729 AQRO60306 1485 aaKnown RBP eCLIP30.3■■■□□ 2.441e-6■■■■□ 25.2
PDCD6-214ENST00000628729 RAD54L2Q9Y4B4 1467 aa30.26■■■□□ 2.44
PDCD6-214ENST00000628729 CUX1P39880 1505 aa30.25■■■□□ 2.43
PDCD6-214ENST00000628729 CHD1O14646 1710 aa30.24■■■□□ 2.43
PDCD6-214ENST00000628729 RIMBP3CA6NJZ7 1639 aa30.23■■■□□ 2.43
PDCD6-214ENST00000628729 RIMBP3BA6NNM3 1639 aa30.23■■■□□ 2.43
PDCD6-214ENST00000628729 RIMBP3Q9UFD9 1639 aa30.23■■■□□ 2.43
PDCD6-214ENST00000628729 FGD5Q6ZNL6 1462 aa30.21■■■□□ 2.43
PDCD6-214ENST00000628729 SOGA1O94964 1423 aa30.16■■■□□ 2.42
PDCD6-214ENST00000628729 ARHGEF11O15085 1522 aa30.12■■■□□ 2.41
PDCD6-214ENST00000628729 SUPT5HO00267 1087 aaKnown RBP30.11■■■□□ 2.41
PDCD6-214ENST00000628729 WDR97A6NE52 1622 aa30.11■■■□□ 2.41
PDCD6-214ENST00000628729 TDRD9Q8NDG6 1382 aaKnown RBP30.1■■■□□ 2.41
PDCD6-214ENST00000628729 SNAPC4Q5SXM2 1469 aa30.03■■■□□ 2.4
PDCD6-214ENST00000628729 PBRM1Q86U86 1689 aa29.93■■■□□ 2.38
PDCD6-214ENST00000628729 FBLN2P98095 1184 aa29.92■■■□□ 2.38
PDCD6-214ENST00000628729 MAGI1Q96QZ7 1491 aaPredicted RBP29.92■■■□□ 2.38
PDCD6-214ENST00000628729 GRIN2BQ13224 1484 aa29.91■■■□□ 2.38
PDCD6-214ENST00000628729 ABCA5Q8WWZ7 1642 aa29.89■■■□□ 2.38
PDCD6-214ENST00000628729 CLASP1Q7Z460 1538 aa29.89■■■□□ 2.38
PDCD6-214ENST00000628729 ARAP1Q96P48 1450 aa29.87■■■□□ 2.37
PDCD6-214ENST00000628729 ABCA10Q8WWZ4 1543 aa29.86■■■□□ 2.37
PDCD6-214ENST00000628729 GAPVD1Q14C86 1478 aa29.83■■■□□ 2.37
PDCD6-214ENST00000628729 BIVM-ERCC5R4GMW8 1640 aa29.82■■■□□ 2.36
PDCD6-214ENST00000628729 SYNJ2O15056 1496 aa29.81■■■□□ 2.36
PDCD6-214ENST00000628729 SYNJ1O43426 1573 aa29.81■■■□□ 2.36
PDCD6-214ENST00000628729 TOP2BQ02880 1626 aa29.78■■■□□ 2.36
PDCD6-214ENST00000628729 CYB5RLQ6IPT4 315 aa29.74■■■□□ 2.35
PDCD6-214ENST00000628729 CHMP7Q8WUX9 453 aaPredicted RBP29.72■■■□□ 2.35
PDCD6-214ENST00000628729 WRNQ14191 1432 aaPredicted RBP eCLIP29.71■■■□□ 2.355e-6■■■■■ 33.4
PDCD6-214ENST00000628729 ADAMTS12P58397 1594 aa29.64■■■□□ 2.34
PDCD6-214ENST00000628729 CHIC1Q5VXU3 224 aa29.58■■■□□ 2.33
PDCD6-214ENST00000628729 GRIN2AQ12879 1464 aa29.57■■■□□ 2.32
PDCD6-214ENST00000628729 CEP170Q5SW79 1584 aa29.53■■■□□ 2.32
PDCD6-214ENST00000628729 ERICH3Q5RHP9 1530 aa29.49■■■□□ 2.31
PDCD6-214ENST00000628729 NUP160Q12769 1436 aa29.47■■■□□ 2.31
PDCD6-214ENST00000628729 ERCC6L2Q5T890 1561 aa29.47■■■□□ 2.31
PDCD6-214ENST00000628729 FHAD1B1AJZ9 1412 aa29.44■■■□□ 2.3
PDCD6-214ENST00000628729 SHROOM2Q13796 1616 aa29.39■■■□□ 2.3
PDCD6-214ENST00000628729 TRHP20396 242 aaPredicted RBP29.31■■■□□ 2.28
PDCD6-214ENST00000628729 RUSC2Q8N2Y8 1516 aa29.25■■■□□ 2.27
PDCD6-214ENST00000628729 CUL7Q14999 1698 aa29.12■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms