Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 GPX2-204ENST00000557323 778 ntTSL 38.5□□□□□ -1.054e-10■■■□□ 19.1
DDX55Q8NHQ9 GPX2-203ENST00000557049 476 ntTSL 37.31□□□□□ -1.244e-10■■■□□ 19.1
DDX55Q8NHQ9 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC25.8■■□□□ 1.721e-10■■■□□ 19.1
DDX55Q8NHQ9 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.437e-13■■■□□ 19.1
DDX55Q8NHQ9 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.411e-10■■■□□ 19.1
DDX55Q8NHQ9 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.142e-8■■■□□ 19.1
DDX55Q8NHQ9 SCAMP3-208ENST00000490999 1011 ntTSL 219.51■□□□□ 0.711e-10■■■□□ 19.1
DDX55Q8NHQ9 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.632e-8■■■□□ 19.1
DDX55Q8NHQ9 SCAMP3-205ENST00000472397 1030 ntTSL 312.74□□□□□ -0.371e-10■■■□□ 19.1
DDX55Q8NHQ9 SCAMP3-206ENST00000478737 649 ntTSL 312.13□□□□□ -0.471e-10■■■□□ 19.1
DDX55Q8NHQ9 RAD23A-208ENST00000591499 1350 ntTSL 224.73■■□□□ 1.552e-10■■■□□ 19
DDX55Q8NHQ9 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.282e-10■■■□□ 19
DDX55Q8NHQ9 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.852e-10■■■□□ 19
DDX55Q8NHQ9 RAD23A-210ENST00000593114 1691 ntTSL 519.43■□□□□ 0.72e-10■■■□□ 19
DDX55Q8NHQ9 RAD23A-202ENST00000586375 894 ntTSL 319.26■□□□□ 0.672e-10■■■□□ 19
DDX55Q8NHQ9 RAD23A-206ENST00000590881 999 ntTSL 516.48■□□□□ 0.232e-10■■■□□ 19
DDX55Q8NHQ9 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC16.19■□□□□ 0.182e-10■■■□□ 19
DDX55Q8NHQ9 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC25.27■■□□□ 1.642e-10■■■□□ 19
DDX55Q8NHQ9 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.4■□□□□ 0.862e-10■■■□□ 19
DDX55Q8NHQ9 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.82■□□□□ 0.762e-10■■■□□ 19
DDX55Q8NHQ9 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC19.28■□□□□ 0.682e-10■■■□□ 19
DDX55Q8NHQ9 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.642e-10■■■□□ 19
DDX55Q8NHQ9 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC18.13■□□□□ 0.492e-10■■■□□ 19
DDX55Q8NHQ9 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.492e-10■■■□□ 19
DDX55Q8NHQ9 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC14.89□□□□□ -0.032e-10■■■□□ 19
DDX55Q8NHQ9 RNF187-202ENST00000482739 2467 ntTSL 514.69□□□□□ -0.061e-7■■■□□ 19
DDX55Q8NHQ9 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.351e-7■■■□□ 19
DDX55Q8NHQ9 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.961e-7■■■□□ 19
DDX55Q8NHQ9 SPSB3-209ENST00000567868 1628 ntTSL 326.21■■□□□ 1.791e-7■■■□□ 19
DDX55Q8NHQ9 SPSB3-203ENST00000563705 876 ntTSL 526.16■■□□□ 1.781e-7■■■□□ 19
DDX55Q8NHQ9 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC25.65■■□□□ 1.72e-17■■■□□ 19
DDX55Q8NHQ9 SEPT9-214ENST00000586456 545 ntTSL 224.77■■□□□ 1.567e-11■■■□□ 19
DDX55Q8NHQ9 GLRX3-203ENST00000481034 1921 ntTSL 1 (best)23.92■■□□□ 1.421e-7■■■□□ 19
DDX55Q8NHQ9 SPSB3-211ENST00000569380 1781 ntTSL 223.81■■□□□ 1.41e-7■■■□□ 19
DDX55Q8NHQ9 SPSB3-206ENST00000564709 2316 ntTSL 223.67■■□□□ 1.381e-7■■■□□ 19
DDX55Q8NHQ9 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.381e-7■■■□□ 19
DDX55Q8NHQ9 SPSB3-207ENST00000565550 898 ntTSL 223.57■■□□□ 1.361e-7■■■□□ 19
DDX55Q8NHQ9 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC22.91■■□□□ 1.261e-7■■■□□ 19
DDX55Q8NHQ9 SPSB3-204ENST00000563741 1746 ntTSL 522.47■■□□□ 1.191e-7■■■□□ 19
DDX55Q8NHQ9 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.181e-7■■■□□ 19
DDX55Q8NHQ9 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC22.34■■□□□ 1.177e-11■■■□□ 19
DDX55Q8NHQ9 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.161e-7■■■□□ 19
DDX55Q8NHQ9 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.131e-7■■■□□ 19
DDX55Q8NHQ9 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC22■■□□□ 1.117e-11■■■□□ 19
DDX55Q8NHQ9 TRABD-205ENST00000463233 2404 ntTSL 1 (best)21.97■■□□□ 1.111e-7■■■□□ 19
DDX55Q8NHQ9 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.957e-11■■■□□ 19
DDX55Q8NHQ9 SPSB3-202ENST00000563668 1509 ntTSL 220.77■□□□□ 0.921e-7■■■□□ 19
DDX55Q8NHQ9 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC20.72■□□□□ 0.911e-7■■■□□ 19
DDX55Q8NHQ9 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.771e-7■■■□□ 19
DDX55Q8NHQ9 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.741e-7■■■□□ 19
DDX55Q8NHQ9 SPSB3-205ENST00000564070 714 ntTSL 319.5■□□□□ 0.711e-7■■■□□ 19
DDX55Q8NHQ9 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.622e-8■■■□□ 19
DDX55Q8NHQ9 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.61e-7■■■□□ 19
DDX55Q8NHQ9 CHRD-208ENST00000460627 4719 ntTSL 218.54■□□□□ 0.562e-8■■■□□ 19
DDX55Q8NHQ9 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.531e-7■■■□□ 19
DDX55Q8NHQ9 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.457e-11■■■□□ 19
DDX55Q8NHQ9 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.69■□□□□ 0.427e-11■■■□□ 19
DDX55Q8NHQ9 SEPT9-224ENST00000589246 594 ntTSL 217.19■□□□□ 0.347e-11■■■□□ 19
DDX55Q8NHQ9 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.277e-11■■■□□ 19
DDX55Q8NHQ9 PRMT5-214ENST00000553915 1931 ntTSL 216.55■□□□□ 0.242e-17■■■□□ 19
DDX55Q8NHQ9 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.232e-8■■■□□ 19
DDX55Q8NHQ9 CHRD-205ENST00000448472 3547 ntTSL 1 (best)16.46■□□□□ 0.232e-8■■■□□ 19
DDX55Q8NHQ9 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.172e-8■■■□□ 19
DDX55Q8NHQ9 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.097e-11■■■□□ 19
DDX55Q8NHQ9 CHRD-212ENST00000470150 4234 ntTSL 215.53■□□□□ 0.082e-8■■■□□ 19
DDX55Q8NHQ9 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.071e-7■■■□□ 19
DDX55Q8NHQ9 SPSB3-212ENST00000569769 580 ntTSL 315.45■□□□□ 0.061e-7■■■□□ 19
DDX55Q8NHQ9 CHRD-204ENST00000420973 3492 ntTSL 1 (best)15.3■□□□□ 0.042e-8■■■□□ 19
DDX55Q8NHQ9 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC15.06■□□□□ 07e-11■■■□□ 19
DDX55Q8NHQ9 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.051e-7■■■□□ 19
DDX55Q8NHQ9 SETD3-205ENST00000446066 1754 ntTSL 514.51□□□□□ -0.091e-7■■■□□ 19
DDX55Q8NHQ9 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.111e-7■■■□□ 19
DDX55Q8NHQ9 SEPT9-201ENST00000329047 4453 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.237e-11■■■□□ 19
DDX55Q8NHQ9 SEPT9-203ENST00000427177 3821 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.257e-11■■■□□ 19
DDX55Q8NHQ9 SEPT9-207ENST00000449803 3996 ntTSL 2 BASIC13.39□□□□□ -0.277e-11■■■□□ 19
DDX55Q8NHQ9 SEPT9-206ENST00000431235 4004 ntTSL 5 BASIC13.02□□□□□ -0.337e-11■■■□□ 19
DDX55Q8NHQ9 SEPT9-204ENST00000427180 3635 ntTSL 2 BASIC12.95□□□□□ -0.347e-11■■■□□ 19
DDX55Q8NHQ9 SEPT9-205ENST00000427674 3937 ntTSL 1 (best) BASIC12.63□□□□□ -0.397e-11■■■□□ 19
DDX55Q8NHQ9 RNF145-207ENST00000519985 894 ntTSL 312.48□□□□□ -0.411e-7■■■□□ 19
DDX55Q8NHQ9 GALNT2-202ENST00000485438 4030 ntTSL 511.64□□□□□ -0.551e-7■■■□□ 19
DDX55Q8NHQ9 NCEH1-204ENST00000475381 4687 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.587e-11■■■□□ 19
DDX55Q8NHQ9 RNF145-204ENST00000518284 1940 ntTSL 210.56□□□□□ -0.721e-7■■■□□ 19
DDX55Q8NHQ9 GLT8D1-202ENST00000394783 1621 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.741e-7■■■□□ 19
DDX55Q8NHQ9 NCEH1-205ENST00000538775 4315 ntAPPRIS ALT2 TSL 2 BASIC10.24□□□□□ -0.777e-11■■■□□ 19
DDX55Q8NHQ9 LMBR1L-226ENST00000552449 277 ntTSL 39.45□□□□□ -0.91e-7■■■□□ 19
DDX55Q8NHQ9 NCEH1-206ENST00000543711 4062 ntTSL 2 BASIC8.88□□□□□ -0.997e-11■■■□□ 19
DDX55Q8NHQ9 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.381e-7■■■□□ 19
DDX55Q8NHQ9 PRMT5-227ENST00000557758 597 ntTSL 36.34□□□□□ -1.391e-7■■■□□ 19
DDX55Q8NHQ9 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC6.29□□□□□ -1.41e-7■■■□□ 19
DDX55Q8NHQ9 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC23.38■■□□□ 1.336e-10■■■□□ 19
DDX55Q8NHQ9 RANGAP1-201ENST00000356244 3060 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.319e-7■■■□□ 19
DDX55Q8NHQ9 RANGAP1-202ENST00000405486 3469 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.349e-7■■■□□ 19
DDX55Q8NHQ9 RANGAP1-207ENST00000455915 4222 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.639e-7■■■□□ 19
DDX55Q8NHQ9 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.555e-7■■■□□ 19
DDX55Q8NHQ9 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC23.65■■□□□ 1.385e-7■■■□□ 19
DDX55Q8NHQ9 NFKBIL1-202ENST00000376146 1411 ntTSL 423.65■■□□□ 1.385e-7■■■□□ 19
DDX55Q8NHQ9 LDLR-201ENST00000252444 5337 ntAPPRIS ALT2 TSL 1 (best)14.53□□□□□ -0.086e-8■■■□□ 19
DDX55Q8NHQ9 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC30.18■■■□□ 2.421e-13■■■□□ 18.9
DDX55Q8NHQ9 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC27.98■■■□□ 2.071e-13■■■□□ 18.9
DDX55Q8NHQ9 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC27.05■■□□□ 1.921e-13■■■□□ 18.9
Retrieved 100 of 15,504 protein–RNA pairs in 97.5 ms