RNA–Protein interactions for RNA: ENST00000566339.5

SPSB3-208, Transcript of splA/ryanodine receptor domain and SOCS box containing 3, human

APPRIS P1 TSL 1 (best) BASIC

Gene SPSB3, Length 1,784 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPSB3-208	ENST00000566339	NISCH	Q9Y2I1	1504 aa		44.31	■■■■■ 4.68
SPSB3-208	ENST00000566339	CCDC180	Q9P1Z9	1646 aa		38.17	■■■■□ 3.7
SPSB3-208	ENST00000566339	ABCC9	O60706	1549 aa		37.76	■■■■□ 3.63
SPSB3-208	ENST00000566339	ZCCHC6	Q5VYS8	1495 aa	Known RBP	37.55	■■■■□ 3.6
SPSB3-208	ENST00000566339	SHROOM4	Q9ULL8	1493 aa		37.01	■■■■□ 3.52
SPSB3-208	ENST00000566339	DCAF1	Q9Y4B6	1507 aa		36.68	■■■■□ 3.46
SPSB3-208	ENST00000566339	SUPT5H	O00267	1087 aa	Known RBP	36.51	■■■■□ 3.44
SPSB3-208	ENST00000566339	DCAF8L2	P0C7V8	631 aa		36.15	■■■■□ 3.38
SPSB3-208	ENST00000566339	RB1CC1	Q8TDY2	1594 aa		36.1	■■■■□ 3.37
SPSB3-208	ENST00000566339	CHIC1	Q5VXU3	224 aa		36.04	■■■■□ 3.36
SPSB3-208	ENST00000566339	NACAD	O15069	1562 aa		35.97	■■■■□ 3.35
SPSB3-208	ENST00000566339	MYO15B	Q96JP2	1530 aa		35.86	■■■■□ 3.33
SPSB3-208	ENST00000566339	HRC	P23327	699 aa		35.75	■■■■□ 3.31
SPSB3-208	ENST00000566339	UNC13A	Q9UPW8	1703 aa		35.33	■■■■□ 3.25
SPSB3-208	ENST00000566339	PABPN1	Q86U42	306 aa	Known RBP eCLIP	35.3	■■■■□ 3.24
SPSB3-208	ENST00000566339	SCRIB	Q14160	1630 aa		35.17	■■■■□ 3.22
SPSB3-208	ENST00000566339	PCGF6	Q9BYE7	350 aa		35.1	■■■■□ 3.21
SPSB3-208	ENST00000566339	BICRA	Q9NZM4	1560 aa		35.03	■■■■□ 3.2
SPSB3-208	ENST00000566339	DNAJC5B	Q9UF47	199 aa		34.93	■■■■□ 3.18
SPSB3-208	ENST00000566339	RSF1	Q96T23	1441 aa	Predicted RBP	34.89	■■■■□ 3.18
SPSB3-208	ENST00000566339	TRIM26	Q12899	539 aa	Predicted RBP	34.73	■■■■□ 3.15
SPSB3-208	ENST00000566339	LOC105371045	A0A1W2PR82	267 aa		34.64	■■■■□ 3.14
SPSB3-208	ENST00000566339	ZEB1	P37275	1124 aa	Predicted RBP	34.45	■■■■□ 3.11
SPSB3-208	ENST00000566339	PPARGC1B	Q86YN6	1023 aa	Known RBP	34.39	■■■■□ 3.1
SPSB3-208	ENST00000566339	CECR2	Q9BXF3	1484 aa		34.35	■■■■□ 3.09
SPSB3-208	ENST00000566339	MROH2B	Q7Z745	1585 aa		34.33	■■■■□ 3.09
SPSB3-208	ENST00000566339	TRIM41	Q8WV44	630 aa		34.26	■■■■□ 3.07
SPSB3-208	ENST00000566339	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	34.16	■■■■□ 3.06
SPSB3-208	ENST00000566339	WIZ	O95785	1651 aa		34.15	■■■■□ 3.06
SPSB3-208	ENST00000566339	EIF4G1	Q04637	1599 aa	Known RBP	34.15	■■■■□ 3.06
SPSB3-208	ENST00000566339	CC2D2A	Q9P2K1	1620 aa		34.1	■■■■□ 3.05
SPSB3-208	ENST00000566339	SMARCA4	P51532	1647 aa		33.83	■■■■□ 3.01
SPSB3-208	ENST00000566339	TOP2A	P11388	1531 aa	Known RBP	33.79	■■■■□ 3
SPSB3-208	ENST00000566339	FAM9A	Q8IZU1	332 aa	Predicted RBP	33.59	■■■□□ 2.97
SPSB3-208	ENST00000566339	SMARCA2	P51531	1590 aa		33.55	■■■□□ 2.96
SPSB3-208	ENST00000566339	PELP1	Q8IZL8	1130 aa	Known RBP	33.49	■■■□□ 2.95
SPSB3-208	ENST00000566339	CCDC88B	A6NC98	1476 aa		33.44	■■■□□ 2.94
SPSB3-208	ENST00000566339	WRN	Q14191	1432 aa	Predicted RBP eCLIP	33.39	■■■□□ 2.94
SPSB3-208	ENST00000566339	PEG3	Q9GZU2	1588 aa		33.38	■■■□□ 2.93
SPSB3-208	ENST00000566339	EEA1	Q15075	1411 aa		33.27	■■■□□ 2.92
SPSB3-208	ENST00000566339	ATAD2B	Q9ULI0	1458 aa		33.23	■■■□□ 2.91
SPSB3-208	ENST00000566339	NCAPD3	P42695	1498 aa		33.21	■■■□□ 2.91
SPSB3-208	ENST00000566339	ABCC8	Q09428	1581 aa		33.21	■■■□□ 2.91
SPSB3-208	ENST00000566339	TNIK	Q9UKE5	1360 aa		33.1	■■■□□ 2.89
SPSB3-208	ENST00000566339	HMGXB3	Q12766	1538 aa		33	■■■□□ 2.87
SPSB3-208	ENST00000566339	CEP162	Q5TB80	1403 aa		33	■■■□□ 2.87
SPSB3-208	ENST00000566339	CCER1	Q8TC90	406 aa	Predicted RBP	32.98	■■■□□ 2.87
SPSB3-208	ENST00000566339	SCAF1	Q9H7N4	1312 aa	Known RBP	32.96	■■■□□ 2.87
SPSB3-208	ENST00000566339	BAZ1B	Q9UIG0	1483 aa	Known RBP	32.95	■■■□□ 2.87
SPSB3-208	ENST00000566339	EHMT2	Q96KQ7	1210 aa		32.95	■■■□□ 2.87
SPSB3-208	ENST00000566339	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	32.84	■■■□□ 2.85
SPSB3-208	ENST00000566339	GOLGA3	Q08378	1498 aa		32.82	■■■□□ 2.84
SPSB3-208	ENST00000566339	SOGA1	O94964	1423 aa		32.82	■■■□□ 2.84
SPSB3-208	ENST00000566339	CSRNP3	Q8WYN3	585 aa		32.8	■■■□□ 2.84
SPSB3-208	ENST00000566339	ACIN1	Q9UKV3	1341 aa	Known RBP	32.74	■■■□□ 2.83
SPSB3-208	ENST00000566339	SYNJ1	O43426	1573 aa		32.69	■■■□□ 2.82
SPSB3-208	ENST00000566339	KIF21B	O75037	1637 aa		32.67	■■■□□ 2.82
SPSB3-208	ENST00000566339	RUSC2	Q8N2Y8	1516 aa		32.66	■■■□□ 2.82
SPSB3-208	ENST00000566339	CENPB	P07199	599 aa	Predicted RBP	32.64	■■■□□ 2.82
SPSB3-208	ENST00000566339	DIEXF	Q68CQ4	756 aa	Known RBP	32.63	■■■□□ 2.81
SPSB3-208	ENST00000566339	CEP164	Q9UPV0	1460 aa		32.62	■■■□□ 2.81
SPSB3-208	ENST00000566339	NES	P48681	1621 aa		32.6	■■■□□ 2.81
SPSB3-208	ENST00000566339	ERCC6	Q03468	1493 aa		32.55	■■■□□ 2.8
SPSB3-208	ENST00000566339	UBTF	P17480	764 aa	Known RBP	32.49	■■■□□ 2.79
SPSB3-208	ENST00000566339	NEUROD1	Q13562	356 aa		32.43	■■■□□ 2.78
SPSB3-208	ENST00000566339	TOP2B	Q02880	1626 aa		32.42	■■■□□ 2.78
SPSB3-208	ENST00000566339	ZNF316	A6NFI3	1004 aa	Predicted RBP	32.42	■■■□□ 2.78
SPSB3-208	ENST00000566339	BIVM-ERCC5	R4GMW8	1640 aa		32.41	■■■□□ 2.78
SPSB3-208	ENST00000566339	LAMC3	Q9Y6N6	1575 aa		32.38	■■■□□ 2.77
SPSB3-208	ENST00000566339	VPS8	Q8N3P4	1428 aa		32.35	■■■□□ 2.77
SPSB3-208	ENST00000566339	CLIP1	P30622	1438 aa		32.32	■■■□□ 2.76
SPSB3-208	ENST00000566339	CADPS	Q9ULU8	1353 aa		32.27	■■■□□ 2.76
SPSB3-208	ENST00000566339	CUX2	O14529	1486 aa		32.2	■■■□□ 2.75
SPSB3-208	ENST00000566339	PDS5B	Q9NTI5	1447 aa		32.2	■■■□□ 2.75
SPSB3-208	ENST00000566339	GTF3C3	Q9Y5Q9	886 aa		32.17	■■■□□ 2.74
SPSB3-208	ENST00000566339	KIF21A	Q7Z4S6	1674 aa		32.17	■■■□□ 2.74
SPSB3-208	ENST00000566339	CLSPN	Q9HAW4	1339 aa		32.13	■■■□□ 2.73
SPSB3-208	ENST00000566339	ERICH3	Q5RHP9	1530 aa		32.12	■■■□□ 2.73
SPSB3-208	ENST00000566339	RAPGEF2	Q9Y4G8	1499 aa		32.11	■■■□□ 2.73
SPSB3-208	ENST00000566339	TTBK1	Q5TCY1	1321 aa	Predicted RBP	32.1	■■■□□ 2.73
SPSB3-208	ENST00000566339	MYT1	Q01538	1121 aa		32.09	■■■□□ 2.73
SPSB3-208	ENST00000566339	PRDM2	Q13029	1718 aa		32.08	■■■□□ 2.73
SPSB3-208	ENST00000566339	THOC2	Q8NI27	1593 aa	Known RBP	32.07	■■■□□ 2.73
SPSB3-208	ENST00000566339	APLP2	Q06481	763 aa		32.06	■■■□□ 2.72
SPSB3-208	ENST00000566339	CUX1	P39880	1505 aa		32.02	■■■□□ 2.72
SPSB3-208	ENST00000566339	CFTR	P13569	1480 aa		32.01	■■■□□ 2.72
SPSB3-208	ENST00000566339	PRX	Q9BXM0	1461 aa		32	■■■□□ 2.71
SPSB3-208	ENST00000566339	FANCD2	Q9BXW9	1451 aa		31.91	■■■□□ 2.7
SPSB3-208	ENST00000566339	HNRNPUL2	Q1KMD3	747 aa	Known RBP	31.88	■■■□□ 2.69
SPSB3-208	ENST00000566339	MRC2	Q9UBG0	1479 aa		31.87	■■■□□ 2.69
SPSB3-208	ENST00000566339	KIF27	Q86VH2	1401 aa		31.77	■■■□□ 2.68
SPSB3-208	ENST00000566339	ARAP1	Q96P48	1450 aa		31.77	■■■□□ 2.68
SPSB3-208	ENST00000566339	WDR62	O43379	1518 aa		31.76	■■■□□ 2.68
SPSB3-208	ENST00000566339	MIER1	Q8N108	512 aa		31.76	■■■□□ 2.67
SPSB3-208	ENST00000566339	RRBP1	Q9P2E9	1410 aa	Known RBP	31.72	■■■□□ 2.67
SPSB3-208	ENST00000566339	DHX57	Q6P158	1386 aa	Known RBP	31.69	■■■□□ 2.66
SPSB3-208	ENST00000566339	URB2	Q14146	1524 aa	Known RBP	31.61	■■■□□ 2.65
SPSB3-208	ENST00000566339	DNAJC5	Q9H3Z4	198 aa		31.61	■■■□□ 2.65
SPSB3-208	ENST00000566339	MAP3K1	Q13233	1512 aa		31.55	■■■□□ 2.64
SPSB3-208	ENST00000566339	YTHDC1	Q96MU7	727 aa	Known RBP	31.51	■■■□□ 2.63

Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms