RNA–Protein interactions for RNA: ENST00000565550.1

SPSB3-207, Transcript of splA/ryanodine receptor domain and SOCS box containing 3, humanhuman

TSL 2

Gene SPSB3, Length 898 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPSB3-207ENST00000565550 NISCHQ9Y2I1 1504 aa47.1■■■■■ 5.13
SPSB3-207ENST00000565550 ABCC9O60706 1549 aa42.2■■■■■ 4.35
SPSB3-207ENST00000565550 CCDC180Q9P1Z9 1646 aa42.12■■■■■ 4.33
SPSB3-207ENST00000565550 RB1CC1Q8TDY2 1594 aa40.13■■■■■ 4.01
SPSB3-207ENST00000565550 NACADO15069 1562 aa39.89■■■■□ 3.98
SPSB3-207ENST00000565550 DCAF8L2P0C7V8 631 aa39.88■■■■□ 3.97
SPSB3-207ENST00000565550 DNAJC5BQ9UF47 199 aa39.61■■■■□ 3.93
SPSB3-207ENST00000565550 PABPN1Q86U42 306 aaKnown RBP eCLIP39.39■■■■□ 3.9
SPSB3-207ENST00000565550 MYO15BQ96JP2 1530 aa39.35■■■■□ 3.89
SPSB3-207ENST00000565550 UNC13AQ9UPW8 1703 aa39.14■■■■□ 3.86
SPSB3-207ENST00000565550 ZCCHC6Q5VYS8 1495 aaKnown RBP39.03■■■■□ 3.84
SPSB3-207ENST00000565550 BICRAQ9NZM4 1560 aa38.97■■■■□ 3.83
SPSB3-207ENST00000565550 DCAF1Q9Y4B6 1507 aa38.88■■■■□ 3.81
SPSB3-207ENST00000565550 SCRIBQ14160 1630 aa38.46■■■■□ 3.75
SPSB3-207ENST00000565550 SHROOM4Q9ULL8 1493 aa38.41■■■■□ 3.74
SPSB3-207ENST00000565550 CC2D2AQ9P2K1 1620 aa38.07■■■■□ 3.68
SPSB3-207ENST00000565550 EIF4G1Q04637 1599 aaKnown RBP38.02■■■■□ 3.68
SPSB3-207ENST00000565550 CECR2Q9BXF3 1484 aa38■■■■□ 3.67
SPSB3-207ENST00000565550 NCAPD3P42695 1498 aa36.87■■■■□ 3.49
SPSB3-207ENST00000565550 ATAD2BQ9ULI0 1458 aa36.77■■■■□ 3.48
SPSB3-207ENST00000565550 SMARCA4P51532 1647 aa36.68■■■■□ 3.46
SPSB3-207ENST00000565550 SMARCA2P51531 1590 aa36.61■■■■□ 3.45
SPSB3-207ENST00000565550 BAZ1AQ9NRL2 1556 aaPredicted RBP36.53■■■■□ 3.44
SPSB3-207ENST00000565550 HMGXB3Q12766 1538 aa36.53■■■■□ 3.44
SPSB3-207ENST00000565550 ERCC6Q03468 1493 aa36.42■■■■□ 3.42
SPSB3-207ENST00000565550 BAZ1BQ9UIG0 1483 aaKnown RBP36.4■■■■□ 3.42
SPSB3-207ENST00000565550 PEG3Q9GZU2 1588 aa36.32■■■■□ 3.41
SPSB3-207ENST00000565550 MROH2BQ7Z745 1585 aa36.32■■■■□ 3.4
SPSB3-207ENST00000565550 CUX2O14529 1486 aa36.3■■■■□ 3.4
SPSB3-207ENST00000565550 DNAJC5Q9H3Z4 198 aa36.29■■■■□ 3.4
SPSB3-207ENST00000565550 NESP48681 1621 aa36.27■■■■□ 3.4
SPSB3-207ENST00000565550 LAMC3Q9Y6N6 1575 aa35.97■■■■□ 3.35
SPSB3-207ENST00000565550 WIZO95785 1651 aa35.84■■■■□ 3.33
SPSB3-207ENST00000565550 PDS5BQ9NTI5 1447 aa35.83■■■■□ 3.33
SPSB3-207ENST00000565550 THOC2Q8NI27 1593 aaKnown RBP35.8■■■■□ 3.32
SPSB3-207ENST00000565550 CADPSQ9ULU8 1353 aa35.77■■■■□ 3.32
SPSB3-207ENST00000565550 KIF21AQ7Z4S6 1674 aa35.71■■■■□ 3.31
SPSB3-207ENST00000565550 RSF1Q96T23 1441 aaPredicted RBP35.62■■■■□ 3.29
SPSB3-207ENST00000565550 MRC2Q9UBG0 1479 aa35.48■■■■□ 3.27
SPSB3-207ENST00000565550 TOP2AP11388 1531 aaKnown RBP35.39■■■■□ 3.26
SPSB3-207ENST00000565550 WDR62O43379 1518 aa35.36■■■■□ 3.25
SPSB3-207ENST00000565550 CFTRP13569 1480 aa35.35■■■■□ 3.25
SPSB3-207ENST00000565550 CEP164Q9UPV0 1460 aa35.35■■■■□ 3.25
SPSB3-207ENST00000565550 FANCD2Q9BXW9 1451 aa35.35■■■■□ 3.25
SPSB3-207ENST00000565550 CCDC88BA6NC98 1476 aa35.05■■■■□ 3.2
SPSB3-207ENST00000565550 URB2Q14146 1524 aaKnown RBP35.04■■■■□ 3.2
SPSB3-207ENST00000565550 PRDM2Q13029 1718 aa34.84■■■■□ 3.17
SPSB3-207ENST00000565550 OSCARQ8IYS5 282 aa34.76■■■■□ 3.16
SPSB3-207ENST00000565550 TRIM41Q8WV44 630 aa34.76■■■■□ 3.16
SPSB3-207ENST00000565550 TOPBP1Q92547 1522 aa34.67■■■■□ 3.14
SPSB3-207ENST00000565550 IFT140Q96RY7 1462 aa34.65■■■■□ 3.14
SPSB3-207ENST00000565550 ZNF608Q9ULD9 1512 aaPredicted RBP34.61■■■■□ 3.13
SPSB3-207ENST00000565550 ABCC8Q09428 1581 aa34.59■■■■□ 3.13
SPSB3-207ENST00000565550 DNMBPQ6XZF7 1577 aa34.51■■■■□ 3.12
SPSB3-207ENST00000565550 EIF4G3O43432 1585 aaKnown RBP34.35■■■■□ 3.09
SPSB3-207ENST00000565550 AQRO60306 1485 aaKnown RBP eCLIP34.34■■■■□ 3.092e-8■■■■■ 44.6
SPSB3-207ENST00000565550 POLA1P09884 1462 aaPredicted RBP34.33■■■■□ 3.09
SPSB3-207ENST00000565550 TARBP1Q13395 1621 aaKnown RBP34.32■■■■□ 3.08
SPSB3-207ENST00000565550 RAD54L2Q9Y4B4 1467 aa34.24■■■■□ 3.07
SPSB3-207ENST00000565550 SOGA1O94964 1423 aa34.21■■■■□ 3.07
SPSB3-207ENST00000565550 SUPT5HO00267 1087 aaKnown RBP34.19■■■■□ 3.06
SPSB3-207ENST00000565550 RIMBP3CA6NJZ7 1639 aa34.18■■■■□ 3.06
SPSB3-207ENST00000565550 RIMBP3BA6NNM3 1639 aa34.18■■■■□ 3.06
SPSB3-207ENST00000565550 RIMBP3Q9UFD9 1639 aa34.18■■■■□ 3.06
SPSB3-207ENST00000565550 TDRD9Q8NDG6 1382 aaKnown RBP34.16■■■■□ 3.06
SPSB3-207ENST00000565550 FBLN2P98095 1184 aa34.16■■■■□ 3.06
SPSB3-207ENST00000565550 FGD5Q6ZNL6 1462 aa34.13■■■■□ 3.05
SPSB3-207ENST00000565550 ARHGEF11O15085 1522 aa34.1■■■■□ 3.05
SPSB3-207ENST00000565550 CUX1P39880 1505 aa34.1■■■■□ 3.05
SPSB3-207ENST00000565550 CHD1O14646 1710 aa34.05■■■■□ 3.04
SPSB3-207ENST00000565550 CYB5RLQ6IPT4 315 aa33.96■■■■□ 3.03
SPSB3-207ENST00000565550 SNAPC4Q5SXM2 1469 aa33.95■■■■□ 3.02
SPSB3-207ENST00000565550 WDR97A6NE52 1622 aa33.93■■■■□ 3.02
SPSB3-207ENST00000565550 CHMP7Q8WUX9 453 aaPredicted RBP33.9■■■■□ 3.02
SPSB3-207ENST00000565550 GRIN2BQ13224 1484 aa33.87■■■■□ 3.01
SPSB3-207ENST00000565550 MAGI1Q96QZ7 1491 aaPredicted RBP33.84■■■■□ 3.01
SPSB3-207ENST00000565550 ARAP1Q96P48 1450 aa33.78■■■■□ 3
SPSB3-207ENST00000565550 GAPVD1Q14C86 1478 aa33.77■■■■□ 3
SPSB3-207ENST00000565550 SYNJ2O15056 1496 aa33.75■■■□□ 2.99
SPSB3-207ENST00000565550 ABCA10Q8WWZ4 1543 aa33.73■■■□□ 2.99
SPSB3-207ENST00000565550 CLASP1Q7Z460 1538 aa33.71■■■□□ 2.99
SPSB3-207ENST00000565550 SYNJ1O43426 1573 aa33.69■■■□□ 2.98
SPSB3-207ENST00000565550 WRNQ14191 1432 aaPredicted RBP eCLIP33.64■■■□□ 2.98
SPSB3-207ENST00000565550 PBRM1Q86U86 1689 aa33.64■■■□□ 2.98
SPSB3-207ENST00000565550 ABCA5Q8WWZ7 1642 aa33.62■■■□□ 2.97
SPSB3-207ENST00000565550 TRHP20396 242 aaPredicted RBP33.56■■■□□ 2.96
SPSB3-207ENST00000565550 TOP2BQ02880 1626 aa33.53■■■□□ 2.96
SPSB3-207ENST00000565550 BIVM-ERCC5R4GMW8 1640 aa33.5■■■□□ 2.95
SPSB3-207ENST00000565550 GRIN2AQ12879 1464 aa33.43■■■□□ 2.94
SPSB3-207ENST00000565550 ADAMTS12P58397 1594 aa33.37■■■□□ 2.93
SPSB3-207ENST00000565550 FHAD1B1AJZ9 1412 aa33.35■■■□□ 2.93
SPSB3-207ENST00000565550 NUP160Q12769 1436 aa33.32■■■□□ 2.92
SPSB3-207ENST00000565550 ERICH3Q5RHP9 1530 aa33.29■■■□□ 2.92
SPSB3-207ENST00000565550 CEP170Q5SW79 1584 aa33.28■■■□□ 2.92
SPSB3-207ENST00000565550 ERCC6L2Q5T890 1561 aa33.23■■■□□ 2.91
SPSB3-207ENST00000565550 SHROOM2Q13796 1616 aa33.1■■■□□ 2.89
SPSB3-207ENST00000565550 JPH4Q96JJ6 628 aa33.07■■■□□ 2.88
SPSB3-207ENST00000565550 PRG4Q92954 1404 aaPredicted RBP33.02■■■□□ 2.88
SPSB3-207ENST00000565550 IGF1RP08069 1367 aa32.97■■■□□ 2.87
SPSB3-207ENST00000565550 KIF27Q86VH2 1401 aa32.95■■■□□ 2.87
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms