RNA–Protein interactions for RNA: ENST00000563668.5

SPSB3-202, Transcript of splA/ryanodine receptor domain and SOCS box containing 3, humanhuman

TSL 2

Gene SPSB3, Length 1,509 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPSB3-202ENST00000563668 NISCHQ9Y2I1 1504 aa41.62■■■■■ 4.25
SPSB3-202ENST00000563668 CCDC180Q9P1Z9 1646 aa36.98■■■■□ 3.51
SPSB3-202ENST00000563668 ABCC9O60706 1549 aa36.57■■■■□ 3.45
SPSB3-202ENST00000563668 DCAF8L2P0C7V8 631 aa34.96■■■■□ 3.19
SPSB3-202ENST00000563668 RB1CC1Q8TDY2 1594 aa34.94■■■■□ 3.18
SPSB3-202ENST00000563668 NACADO15069 1562 aa34.86■■■■□ 3.17
SPSB3-202ENST00000563668 ZCCHC6Q5VYS8 1495 aaKnown RBP34.61■■■■□ 3.13
SPSB3-202ENST00000563668 MYO15BQ96JP2 1530 aa34.54■■■■□ 3.12
SPSB3-202ENST00000563668 DCAF1Q9Y4B6 1507 aa34.34■■■■□ 3.09
SPSB3-202ENST00000563668 UNC13AQ9UPW8 1703 aa34.24■■■■□ 3.07
SPSB3-202ENST00000563668 PABPN1Q86U42 306 aaKnown RBP eCLIP34.21■■■■□ 3.07
SPSB3-202ENST00000563668 BICRAQ9NZM4 1560 aa34.02■■■■□ 3.04
SPSB3-202ENST00000563668 DNAJC5BQ9UF47 199 aa33.9■■■■□ 3.02
SPSB3-202ENST00000563668 SCRIBQ14160 1630 aa33.86■■■■□ 3.01
SPSB3-202ENST00000563668 SHROOM4Q9ULL8 1493 aa33.42■■■□□ 2.94
SPSB3-202ENST00000563668 EIF4G1Q04637 1599 aaKnown RBP33.09■■■□□ 2.89
SPSB3-202ENST00000563668 CC2D2AQ9P2K1 1620 aa33.02■■■□□ 2.88
SPSB3-202ENST00000563668 CECR2Q9BXF3 1484 aa32.83■■■□□ 2.85
SPSB3-202ENST00000563668 SMARCA4P51532 1647 aa32.32■■■□□ 2.76
SPSB3-202ENST00000563668 ATAD2BQ9ULI0 1458 aa32.24■■■□□ 2.75
SPSB3-202ENST00000563668 NCAPD3P42695 1498 aa32.22■■■□□ 2.75
SPSB3-202ENST00000563668 BAZ1AQ9NRL2 1556 aaPredicted RBP32.21■■■□□ 2.75
SPSB3-202ENST00000563668 MROH2BQ7Z745 1585 aa32.14■■■□□ 2.73
SPSB3-202ENST00000563668 SMARCA2P51531 1590 aa32.09■■■□□ 2.73
SPSB3-202ENST00000563668 HMGXB3Q12766 1538 aa31.99■■■□□ 2.71
SPSB3-202ENST00000563668 PEG3Q9GZU2 1588 aa31.98■■■□□ 2.71
SPSB3-202ENST00000563668 BAZ1BQ9UIG0 1483 aaKnown RBP31.91■■■□□ 2.7
SPSB3-202ENST00000563668 WIZO95785 1651 aa31.76■■■□□ 2.68
SPSB3-202ENST00000563668 RSF1Q96T23 1441 aaPredicted RBP31.68■■■□□ 2.66
SPSB3-202ENST00000563668 NESP48681 1621 aa31.62■■■□□ 2.65
SPSB3-202ENST00000563668 ERCC6Q03468 1493 aa31.44■■■□□ 2.62
SPSB3-202ENST00000563668 LAMC3Q9Y6N6 1575 aa31.35■■■□□ 2.61
SPSB3-202ENST00000563668 TOP2AP11388 1531 aaKnown RBP31.34■■■□□ 2.61
SPSB3-202ENST00000563668 CADPSQ9ULU8 1353 aa31.28■■■□□ 2.6
SPSB3-202ENST00000563668 KIF21AQ7Z4S6 1674 aa31.16■■■□□ 2.58
SPSB3-202ENST00000563668 PDS5BQ9NTI5 1447 aa31.16■■■□□ 2.58
SPSB3-202ENST00000563668 CUX2O14529 1486 aa31.15■■■□□ 2.58
SPSB3-202ENST00000563668 THOC2Q8NI27 1593 aaKnown RBP31.09■■■□□ 2.57
SPSB3-202ENST00000563668 CCDC88BA6NC98 1476 aa31.05■■■□□ 2.56
SPSB3-202ENST00000563668 CFTRP13569 1480 aa31.05■■■□□ 2.56
SPSB3-202ENST00000563668 FANCD2Q9BXW9 1451 aa30.92■■■□□ 2.54
SPSB3-202ENST00000563668 MRC2Q9UBG0 1479 aa30.87■■■□□ 2.53
SPSB3-202ENST00000563668 CEP164Q9UPV0 1460 aa30.87■■■□□ 2.53
SPSB3-202ENST00000563668 WDR62O43379 1518 aa30.78■■■□□ 2.52
SPSB3-202ENST00000563668 SUPT5HO00267 1087 aaKnown RBP30.78■■■□□ 2.52
SPSB3-202ENST00000563668 PRDM2Q13029 1718 aa30.7■■■□□ 2.51
SPSB3-202ENST00000563668 URB2Q14146 1524 aaKnown RBP30.67■■■□□ 2.5
SPSB3-202ENST00000563668 DNAJC5Q9H3Z4 198 aa30.57■■■□□ 2.48
SPSB3-202ENST00000563668 TOPBP1Q92547 1522 aa30.41■■■□□ 2.46
SPSB3-202ENST00000563668 DNMBPQ6XZF7 1577 aa30.31■■■□□ 2.44
SPSB3-202ENST00000563668 ABCC8Q09428 1581 aa30.29■■■□□ 2.44
SPSB3-202ENST00000563668 ZNF608Q9ULD9 1512 aaPredicted RBP30.23■■■□□ 2.43
SPSB3-202ENST00000563668 IFT140Q96RY7 1462 aa30.22■■■□□ 2.43
SPSB3-202ENST00000563668 POLA1P09884 1462 aaPredicted RBP30.15■■■□□ 2.42
SPSB3-202ENST00000563668 CUX1P39880 1505 aa30.14■■■□□ 2.42
SPSB3-202ENST00000563668 TARBP1Q13395 1621 aaKnown RBP30.1■■■□□ 2.41
SPSB3-202ENST00000563668 RAD54L2Q9Y4B4 1467 aa30.08■■■□□ 2.41
SPSB3-202ENST00000563668 FGD5Q6ZNL6 1462 aa30.05■■■□□ 2.4
SPSB3-202ENST00000563668 AQRO60306 1485 aaKnown RBP eCLIP30.02■■■□□ 2.42e-8■■■■■ 44.6
SPSB3-202ENST00000563668 SOGA1O94964 1423 aa30.02■■■□□ 2.4
SPSB3-202ENST00000563668 EIF4G3O43432 1585 aaKnown RBP30.01■■■□□ 2.39
SPSB3-202ENST00000563668 TDRD9Q8NDG6 1382 aaKnown RBP29.93■■■□□ 2.38
SPSB3-202ENST00000563668 OSCARQ8IYS5 282 aa29.9■■■□□ 2.38
SPSB3-202ENST00000563668 WRNQ14191 1432 aaPredicted RBP eCLIP29.83■■■□□ 2.37
SPSB3-202ENST00000563668 SYNJ1O43426 1573 aa29.81■■■□□ 2.36
SPSB3-202ENST00000563668 WDR97A6NE52 1622 aa29.76■■■□□ 2.35
SPSB3-202ENST00000563668 TOP2BQ02880 1626 aa29.76■■■□□ 2.35
SPSB3-202ENST00000563668 BIVM-ERCC5R4GMW8 1640 aa29.74■■■□□ 2.35
SPSB3-202ENST00000563668 ABCA10Q8WWZ4 1543 aa29.71■■■□□ 2.35
SPSB3-202ENST00000563668 FBLN2P98095 1184 aa29.69■■■□□ 2.34
SPSB3-202ENST00000563668 SNAPC4Q5SXM2 1469 aa29.68■■■□□ 2.34
SPSB3-202ENST00000563668 CHD1O14646 1710 aa29.68■■■□□ 2.34
SPSB3-202ENST00000563668 GRIN2BQ13224 1484 aa29.65■■■□□ 2.34
SPSB3-202ENST00000563668 GAPVD1Q14C86 1478 aa29.65■■■□□ 2.34
SPSB3-202ENST00000563668 ABCA5Q8WWZ7 1642 aa29.61■■■□□ 2.33
SPSB3-202ENST00000563668 PBRM1Q86U86 1689 aa29.57■■■□□ 2.32
SPSB3-202ENST00000563668 MAGI1Q96QZ7 1491 aaPredicted RBP29.57■■■□□ 2.32
SPSB3-202ENST00000563668 CHMP7Q8WUX9 453 aaPredicted RBP29.53■■■□□ 2.32
SPSB3-202ENST00000563668 TRIM41Q8WV44 630 aa29.51■■■□□ 2.32
SPSB3-202ENST00000563668 SYNJ2O15056 1496 aa29.49■■■□□ 2.31
SPSB3-202ENST00000563668 RIMBP3CA6NJZ7 1639 aa29.45■■■□□ 2.3
SPSB3-202ENST00000563668 RIMBP3BA6NNM3 1639 aa29.45■■■□□ 2.3
SPSB3-202ENST00000563668 RIMBP3Q9UFD9 1639 aa29.45■■■□□ 2.3
SPSB3-202ENST00000563668 ARHGEF11O15085 1522 aa29.41■■■□□ 2.3
SPSB3-202ENST00000563668 CLASP1Q7Z460 1538 aa29.36■■■□□ 2.29
SPSB3-202ENST00000563668 ADAMTS12P58397 1594 aa29.33■■■□□ 2.29
SPSB3-202ENST00000563668 ERICH3Q5RHP9 1530 aa29.32■■■□□ 2.28
SPSB3-202ENST00000563668 GRIN2AQ12879 1464 aa29.29■■■□□ 2.28
SPSB3-202ENST00000563668 FHAD1B1AJZ9 1412 aa29.28■■■□□ 2.28
SPSB3-202ENST00000563668 CYB5RLQ6IPT4 315 aa29.23■■■□□ 2.27
SPSB3-202ENST00000563668 CEP170Q5SW79 1584 aa29.19■■■□□ 2.26
SPSB3-202ENST00000563668 ARAP1Q96P48 1450 aa29.19■■■□□ 2.26
SPSB3-202ENST00000563668 KIF27Q86VH2 1401 aa29.18■■■□□ 2.26
SPSB3-202ENST00000563668 IGF1RP08069 1367 aa29.18■■■□□ 2.26
SPSB3-202ENST00000563668 NUP160Q12769 1436 aa29.17■■■□□ 2.26
SPSB3-202ENST00000563668 ERCC6L2Q5T890 1561 aa29.04■■■□□ 2.24
SPSB3-202ENST00000563668 RUSC2Q8N2Y8 1516 aa29.03■■■□□ 2.24
SPSB3-202ENST00000563668 CUL7Q14999 1698 aa28.98■■■□□ 2.23
SPSB3-202ENST00000563668 CARMIL1Q5VZK9 1371 aa28.96■■■□□ 2.23
SPSB3-202ENST00000563668 SHROOM2Q13796 1616 aa28.96■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms