RNA–Protein interactions for RNA: ENST00000569380.5

SPSB3-211, Transcript of splA/ryanodine receptor domain and SOCS box containing 3, humanhuman

TSL 2

Gene SPSB3, Length 1,781 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPSB3-211ENST00000569380 NISCHQ9Y2I1 1504 aa47.67■■■■■ 5.22
SPSB3-211ENST00000569380 CCDC180Q9P1Z9 1646 aa41.81■■■■■ 4.28
SPSB3-211ENST00000569380 ABCC9O60706 1549 aa41.02■■■■■ 4.16
SPSB3-211ENST00000569380 ZCCHC6Q5VYS8 1495 aaKnown RBP39.92■■■■□ 3.98
SPSB3-211ENST00000569380 DCAF8L2P0C7V8 631 aa39.63■■■■□ 3.93
SPSB3-211ENST00000569380 DCAF1Q9Y4B6 1507 aa39.32■■■■□ 3.88
SPSB3-211ENST00000569380 RB1CC1Q8TDY2 1594 aa39.23■■■■□ 3.87
SPSB3-211ENST00000569380 NACADO15069 1562 aa39.09■■■■□ 3.85
SPSB3-211ENST00000569380 MYO15BQ96JP2 1530 aa39.05■■■■□ 3.84
SPSB3-211ENST00000569380 SHROOM4Q9ULL8 1493 aa38.59■■■■□ 3.77
SPSB3-211ENST00000569380 SCRIBQ14160 1630 aa38.49■■■■□ 3.75
SPSB3-211ENST00000569380 UNC13AQ9UPW8 1703 aa38.37■■■■□ 3.73
SPSB3-211ENST00000569380 PABPN1Q86U42 306 aaKnown RBP eCLIP38.29■■■■□ 3.72
SPSB3-211ENST00000569380 BICRAQ9NZM4 1560 aa38.13■■■■□ 3.7
SPSB3-211ENST00000569380 DNAJC5BQ9UF47 199 aa37.97■■■■□ 3.67
SPSB3-211ENST00000569380 CECR2Q9BXF3 1484 aa37.18■■■■□ 3.54
SPSB3-211ENST00000569380 EIF4G1Q04637 1599 aaKnown RBP37.13■■■■□ 3.53
SPSB3-211ENST00000569380 CC2D2AQ9P2K1 1620 aa37.06■■■■□ 3.52
SPSB3-211ENST00000569380 MROH2BQ7Z745 1585 aa36.87■■■■□ 3.49
SPSB3-211ENST00000569380 BAZ1AQ9NRL2 1556 aaPredicted RBP36.81■■■■□ 3.48
SPSB3-211ENST00000569380 SMARCA4P51532 1647 aa36.8■■■■□ 3.48
SPSB3-211ENST00000569380 SUPT5HO00267 1087 aaKnown RBP36.76■■■■□ 3.48
SPSB3-211ENST00000569380 RSF1Q96T23 1441 aaPredicted RBP36.76■■■■□ 3.48
SPSB3-211ENST00000569380 WIZO95785 1651 aa36.56■■■■□ 3.44
SPSB3-211ENST00000569380 ATAD2BQ9ULI0 1458 aa36.33■■■■□ 3.41
SPSB3-211ENST00000569380 PEG3Q9GZU2 1588 aa36.31■■■■□ 3.4
SPSB3-211ENST00000569380 SMARCA2P51531 1590 aa36.23■■■■□ 3.39
SPSB3-211ENST00000569380 NCAPD3P42695 1498 aa36.1■■■■□ 3.37
SPSB3-211ENST00000569380 TOP2AP11388 1531 aaKnown RBP36.08■■■■□ 3.37
SPSB3-211ENST00000569380 BAZ1BQ9UIG0 1483 aaKnown RBP36.08■■■■□ 3.37
SPSB3-211ENST00000569380 HMGXB3Q12766 1538 aa35.97■■■■□ 3.35
SPSB3-211ENST00000569380 CCDC88BA6NC98 1476 aa35.73■■■■□ 3.31
SPSB3-211ENST00000569380 NESP48681 1621 aa35.43■■■■□ 3.26
SPSB3-211ENST00000569380 ERCC6Q03468 1493 aa35.33■■■■□ 3.25
SPSB3-211ENST00000569380 LAMC3Q9Y6N6 1575 aa35.18■■■■□ 3.22
SPSB3-211ENST00000569380 CFTRP13569 1480 aa35.12■■■■□ 3.21
SPSB3-211ENST00000569380 CADPSQ9ULU8 1353 aa35.12■■■■□ 3.21
SPSB3-211ENST00000569380 CUX2O14529 1486 aa35.03■■■■□ 3.2
SPSB3-211ENST00000569380 KIF21AQ7Z4S6 1674 aa34.95■■■■□ 3.19
SPSB3-211ENST00000569380 PDS5BQ9NTI5 1447 aa34.94■■■■□ 3.18
SPSB3-211ENST00000569380 PRDM2Q13029 1718 aa34.93■■■■□ 3.18
SPSB3-211ENST00000569380 THOC2Q8NI27 1593 aaKnown RBP34.92■■■■□ 3.18
SPSB3-211ENST00000569380 ABCC8Q09428 1581 aa34.85■■■■□ 3.17
SPSB3-211ENST00000569380 CHIC1Q5VXU3 224 aa34.84■■■■□ 3.17
SPSB3-211ENST00000569380 FANCD2Q9BXW9 1451 aa34.76■■■■□ 3.16
SPSB3-211ENST00000569380 MRC2Q9UBG0 1479 aa34.66■■■■□ 3.14
SPSB3-211ENST00000569380 CEP164Q9UPV0 1460 aa34.64■■■■□ 3.14
SPSB3-211ENST00000569380 WRNQ14191 1432 aaPredicted RBP eCLIP34.6■■■■□ 3.13
SPSB3-211ENST00000569380 WDR62O43379 1518 aa34.57■■■■□ 3.12
SPSB3-211ENST00000569380 SYNJ1O43426 1573 aa34.56■■■■□ 3.12
SPSB3-211ENST00000569380 TRIM41Q8WV44 630 aa34.53■■■■□ 3.12
SPSB3-211ENST00000569380 CUX1P39880 1505 aa34.51■■■■□ 3.11
SPSB3-211ENST00000569380 URB2Q14146 1524 aaKnown RBP34.41■■■■□ 3.1
SPSB3-211ENST00000569380 TOP2BQ02880 1626 aa34.39■■■■□ 3.1
SPSB3-211ENST00000569380 BIVM-ERCC5R4GMW8 1640 aa34.38■■■■□ 3.09
SPSB3-211ENST00000569380 TOPBP1Q92547 1522 aa34.34■■■■□ 3.09
SPSB3-211ENST00000569380 DNAJC5Q9H3Z4 198 aa34.34■■■■□ 3.09
SPSB3-211ENST00000569380 DNMBPQ6XZF7 1577 aa34.33■■■■□ 3.09
SPSB3-211ENST00000569380 FGD5Q6ZNL6 1462 aa34.21■■■■□ 3.07
SPSB3-211ENST00000569380 POLA1P09884 1462 aaPredicted RBP34.13■■■■□ 3.05
SPSB3-211ENST00000569380 RAD54L2Q9Y4B4 1467 aa34.06■■■■□ 3.04
SPSB3-211ENST00000569380 SOGA1O94964 1423 aa34.04■■■■□ 3.04
SPSB3-211ENST00000569380 FAM9AQ8IZU1 332 aaPredicted RBP34■■■■□ 3.03
SPSB3-211ENST00000569380 RUSC2Q8N2Y8 1516 aa34■■■■□ 3.03
SPSB3-211ENST00000569380 IFT140Q96RY7 1462 aa33.9■■■■□ 3.02
SPSB3-211ENST00000569380 TARBP1Q13395 1621 aaKnown RBP33.88■■■■□ 3.01
SPSB3-211ENST00000569380 ZNF608Q9ULD9 1512 aaPredicted RBP33.88■■■■□ 3.01
SPSB3-211ENST00000569380 WDR97A6NE52 1622 aa33.85■■■■□ 3.01
SPSB3-211ENST00000569380 ABCA10Q8WWZ4 1543 aa33.84■■■■□ 3.01
SPSB3-211ENST00000569380 TDRD9Q8NDG6 1382 aaKnown RBP33.76■■■□□ 2.99
SPSB3-211ENST00000569380 KIF27Q86VH2 1401 aa33.74■■■□□ 2.99
SPSB3-211ENST00000569380 EIF4G3O43432 1585 aaKnown RBP33.7■■■□□ 2.98
SPSB3-211ENST00000569380 EEA1Q15075 1411 aa33.66■■■□□ 2.98
SPSB3-211ENST00000569380 ABCA5Q8WWZ7 1642 aa33.66■■■□□ 2.98
SPSB3-211ENST00000569380 AQRO60306 1485 aaKnown RBP eCLIP33.65■■■□□ 2.982e-8■■■■■ 44.6
SPSB3-211ENST00000569380 CSRNP3Q8WYN3 585 aa33.63■■■□□ 2.97
SPSB3-211ENST00000569380 EHMT2Q96KQ7 1210 aa33.62■■■□□ 2.97
SPSB3-211ENST00000569380 GAPVD1Q14C86 1478 aa33.59■■■□□ 2.97
SPSB3-211ENST00000569380 LOC105371045A0A1W2PR82 267 aa33.55■■■□□ 2.96
SPSB3-211ENST00000569380 IGF1RP08069 1367 aa33.55■■■□□ 2.96
SPSB3-211ENST00000569380 OSCARQ8IYS5 282 aa33.51■■■□□ 2.95
SPSB3-211ENST00000569380 PBRM1Q86U86 1689 aa33.5■■■□□ 2.95
SPSB3-211ENST00000569380 ERICH3Q5RHP9 1530 aa33.41■■■□□ 2.94
SPSB3-211ENST00000569380 GRIN2BQ13224 1484 aa33.4■■■□□ 2.94
SPSB3-211ENST00000569380 PRXQ9BXM0 1461 aa33.39■■■□□ 2.94
SPSB3-211ENST00000569380 KIF21BO75037 1637 aa33.36■■■□□ 2.93
SPSB3-211ENST00000569380 CARMIL1Q5VZK9 1371 aa33.36■■■□□ 2.93
SPSB3-211ENST00000569380 RAPGEF2Q9Y4G8 1499 aa33.36■■■□□ 2.93
SPSB3-211ENST00000569380 SNAPC4Q5SXM2 1469 aa33.32■■■□□ 2.92
SPSB3-211ENST00000569380 CUL7Q14999 1698 aa33.31■■■□□ 2.92
SPSB3-211ENST00000569380 CHD1O14646 1710 aa33.3■■■□□ 2.92
SPSB3-211ENST00000569380 ADAMTS12P58397 1594 aa33.27■■■□□ 2.92
SPSB3-211ENST00000569380 GOLGA3Q08378 1498 aa33.26■■■□□ 2.92
SPSB3-211ENST00000569380 FBLN2P98095 1184 aa33.24■■■□□ 2.91
SPSB3-211ENST00000569380 FHAD1B1AJZ9 1412 aa33.19■■■□□ 2.9
SPSB3-211ENST00000569380 MAGI1Q96QZ7 1491 aaPredicted RBP33.18■■■□□ 2.9
SPSB3-211ENST00000569380 UBTFP17480 764 aaKnown RBP33.17■■■□□ 2.9
SPSB3-211ENST00000569380 RIMBP3CA6NJZ7 1639 aa33.08■■■□□ 2.89
SPSB3-211ENST00000569380 RIMBP3BA6NNM3 1639 aa33.08■■■□□ 2.89
SPSB3-211ENST00000569380 RIMBP3Q9UFD9 1639 aa33.08■■■□□ 2.89
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms