RNA–Protein interactions for RNA: ENST00000355379.3

SCAMP3-202, Transcript of secretory carrier membrane protein 3, humanhuman

TSL 1 (best) BASIC

Gene SCAMP3, Length 1,537 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP3-202ENST00000355379 NISCHQ9Y2I1 1504 aa51.66■■■■■ 5.86
SCAMP3-202ENST00000355379 CCDC180Q9P1Z9 1646 aa45.11■■■■■ 4.81
SCAMP3-202ENST00000355379 ZCCHC6Q5VYS8 1495 aaKnown RBP43.43■■■■■ 4.54
SCAMP3-202ENST00000355379 DCAF1Q9Y4B6 1507 aa42.81■■■■■ 4.44
SCAMP3-202ENST00000355379 DCAF8L2P0C7V8 631 aa42.41■■■■■ 4.38
SCAMP3-202ENST00000355379 ABCC9O60706 1549 aa42.35■■■■■ 4.37
SCAMP3-202ENST00000355379 MYO15BQ96JP2 1530 aa42.28■■■■■ 4.36
SCAMP3-202ENST00000355379 SHROOM4Q9ULL8 1493 aa42■■■■■ 4.31
SCAMP3-202ENST00000355379 NACADO15069 1562 aa41.95■■■■■ 4.31
SCAMP3-202ENST00000355379 RB1CC1Q8TDY2 1594 aa41.54■■■■■ 4.24
SCAMP3-202ENST00000355379 SCRIBQ14160 1630 aa41.34■■■■■ 4.21
SCAMP3-202ENST00000355379 UNC13AQ9UPW8 1703 aa40.75■■■■■ 4.11
SCAMP3-202ENST00000355379 SUPT5HO00267 1087 aaKnown RBP40.48■■■■■ 4.07
SCAMP3-202ENST00000355379 BICRAQ9NZM4 1560 aa40.26■■■■■ 4.04
SCAMP3-202ENST00000355379 RSF1Q96T23 1441 aaPredicted RBP40.07■■■■■ 4.01
SCAMP3-202ENST00000355379 CECR2Q9BXF3 1484 aa40.05■■■■■ 4
SCAMP3-202ENST00000355379 BAZ1AQ9NRL2 1556 aaPredicted RBP39.91■■■■□ 3.98
SCAMP3-202ENST00000355379 PABPN1Q86U42 306 aaKnown RBP eCLIP39.9■■■■□ 3.98
SCAMP3-202ENST00000355379 MROH2BQ7Z745 1585 aa39.87■■■■□ 3.97
SCAMP3-202ENST00000355379 SMARCA4P51532 1647 aa39.71■■■■□ 3.95
SCAMP3-202ENST00000355379 WIZO95785 1651 aa39.58■■■■□ 3.93
SCAMP3-202ENST00000355379 PEG3Q9GZU2 1588 aa39.28■■■■□ 3.88
SCAMP3-202ENST00000355379 TOP2AP11388 1531 aaKnown RBP39.21■■■■□ 3.87
SCAMP3-202ENST00000355379 SMARCA2P51531 1590 aa39.03■■■■□ 3.84
SCAMP3-202ENST00000355379 EIF4G1Q04637 1599 aaKnown RBP39.02■■■■□ 3.84
SCAMP3-202ENST00000355379 ATAD2BQ9ULI0 1458 aa38.99■■■■□ 3.83
SCAMP3-202ENST00000355379 CHIC1Q5VXU3 224 aa38.9■■■■□ 3.82
SCAMP3-202ENST00000355379 BAZ1BQ9UIG0 1483 aaKnown RBP38.77■■■■□ 3.8
SCAMP3-202ENST00000355379 CCDC88BA6NC98 1476 aa38.76■■■■□ 3.8
SCAMP3-202ENST00000355379 NCAPD3P42695 1498 aa38.67■■■■□ 3.78
SCAMP3-202ENST00000355379 HMGXB3Q12766 1538 aa38.66■■■■□ 3.78
SCAMP3-202ENST00000355379 CC2D2AQ9P2K1 1620 aa38.41■■■■□ 3.74
SCAMP3-202ENST00000355379 TRIM41Q8WV44 630 aa38.13■■■■□ 3.69
SCAMP3-202ENST00000355379 ABCC8Q09428 1581 aa37.94■■■■□ 3.66
SCAMP3-202ENST00000355379 CFTRP13569 1480 aa37.83■■■■□ 3.65
SCAMP3-202ENST00000355379 PRDM2Q13029 1718 aa37.79■■■■□ 3.64
SCAMP3-202ENST00000355379 WRNQ14191 1432 aaPredicted RBP eCLIP37.72■■■■□ 3.63
SCAMP3-202ENST00000355379 CADPSQ9ULU8 1353 aa37.65■■■■□ 3.62
SCAMP3-202ENST00000355379 SYNJ1O43426 1573 aa37.57■■■■□ 3.6
SCAMP3-202ENST00000355379 TOP2BQ02880 1626 aa37.46■■■■□ 3.59
SCAMP3-202ENST00000355379 BIVM-ERCC5R4GMW8 1640 aa37.46■■■■□ 3.59
SCAMP3-202ENST00000355379 LAMC3Q9Y6N6 1575 aa37.37■■■■□ 3.57
SCAMP3-202ENST00000355379 LOC105371045A0A1W2PR82 267 aa37.34■■■■□ 3.57
SCAMP3-202ENST00000355379 FAM9AQ8IZU1 332 aaPredicted RBP37.33■■■■□ 3.57
SCAMP3-202ENST00000355379 EEA1Q15075 1411 aa37.32■■■■□ 3.56
SCAMP3-202ENST00000355379 CUX1P39880 1505 aa37.29■■■■□ 3.56
SCAMP3-202ENST00000355379 SOGA1O94964 1423 aa37.23■■■■□ 3.55
SCAMP3-202ENST00000355379 FANCD2Q9BXW9 1451 aa37.23■■■■□ 3.55
SCAMP3-202ENST00000355379 DNAJC5BQ9UF47 199 aa37.22■■■■□ 3.55
SCAMP3-202ENST00000355379 NESP48681 1621 aa37.21■■■■□ 3.55
SCAMP3-202ENST00000355379 RUSC2Q8N2Y8 1516 aa37.09■■■■□ 3.53
SCAMP3-202ENST00000355379 PDS5BQ9NTI5 1447 aa37.02■■■■□ 3.52
SCAMP3-202ENST00000355379 CSRNP3Q8WYN3 585 aa37■■■■□ 3.51
SCAMP3-202ENST00000355379 CEP164Q9UPV0 1460 aa37■■■■□ 3.51
SCAMP3-202ENST00000355379 DNMBPQ6XZF7 1577 aa36.97■■■■□ 3.51
SCAMP3-202ENST00000355379 KIF21AQ7Z4S6 1674 aa36.88■■■■□ 3.49
SCAMP3-202ENST00000355379 TOPBP1Q92547 1522 aa36.86■■■■□ 3.49
SCAMP3-202ENST00000355379 FGD5Q6ZNL6 1462 aa36.85■■■■□ 3.49
SCAMP3-202ENST00000355379 KIF21BO75037 1637 aa36.83■■■■□ 3.49
SCAMP3-202ENST00000355379 KIF27Q86VH2 1401 aa36.77■■■■□ 3.48
SCAMP3-202ENST00000355379 URB2Q14146 1524 aaKnown RBP36.76■■■■□ 3.48
SCAMP3-202ENST00000355379 GOLGA3Q08378 1498 aa36.75■■■■□ 3.47
SCAMP3-202ENST00000355379 EHMT2Q96KQ7 1210 aa36.71■■■■□ 3.47
SCAMP3-202ENST00000355379 POLA1P09884 1462 aaPredicted RBP36.66■■■■□ 3.46
SCAMP3-202ENST00000355379 TNIKQ9UKE5 1360 aa36.66■■■■□ 3.46
SCAMP3-202ENST00000355379 CUX2O14529 1486 aa36.61■■■■□ 3.45
SCAMP3-202ENST00000355379 ABCA10Q8WWZ4 1543 aa36.58■■■■□ 3.45
SCAMP3-202ENST00000355379 PRXQ9BXM0 1461 aa36.57■■■■□ 3.44
SCAMP3-202ENST00000355379 ERICH3Q5RHP9 1530 aa36.57■■■■□ 3.44
SCAMP3-202ENST00000355379 MRC2Q9UBG0 1479 aa36.55■■■■□ 3.44
SCAMP3-202ENST00000355379 WDR97A6NE52 1622 aa36.51■■■■□ 3.44
SCAMP3-202ENST00000355379 RAD54L2Q9Y4B4 1467 aa36.5■■■■□ 3.43
SCAMP3-202ENST00000355379 RAPGEF2Q9Y4G8 1499 aa36.49■■■■□ 3.43
SCAMP3-202ENST00000355379 UBTFP17480 764 aaKnown RBP36.47■■■■□ 3.43
SCAMP3-202ENST00000355379 CEP162Q5TB80 1403 aa36.42■■■■□ 3.42
SCAMP3-202ENST00000355379 IGF1RP08069 1367 aa36.41■■■■□ 3.42
SCAMP3-202ENST00000355379 WDR62O43379 1518 aa36.38■■■■□ 3.41
SCAMP3-202ENST00000355379 TARBP1Q13395 1621 aaKnown RBP36.34■■■■□ 3.41
SCAMP3-202ENST00000355379 ERCC6Q03468 1493 aa36.32■■■■□ 3.4
SCAMP3-202ENST00000355379 ABCA5Q8WWZ7 1642 aa36.3■■■■□ 3.4
SCAMP3-202ENST00000355379 THOC2Q8NI27 1593 aaKnown RBP36.24■■■■□ 3.39
SCAMP3-202ENST00000355379 CUL7Q14999 1698 aa36.23■■■■□ 3.39
SCAMP3-202ENST00000355379 CARMIL1Q5VZK9 1371 aa36.23■■■■□ 3.39
SCAMP3-202ENST00000355379 GAPVD1Q14C86 1478 aa36.15■■■■□ 3.38
SCAMP3-202ENST00000355379 IFT140Q96RY7 1462 aa36.13■■■■□ 3.37
SCAMP3-202ENST00000355379 CLIP1P30622 1438 aa36.12■■■■□ 3.37
SCAMP3-202ENST00000355379 TDRD9Q8NDG6 1382 aaKnown RBP36.1■■■■□ 3.37
SCAMP3-202ENST00000355379 PBRM1Q86U86 1689 aa36.03■■■■□ 3.36
SCAMP3-202ENST00000355379 AQRO60306 1485 aaKnown RBP eCLIP35.88■■■■□ 3.33
SCAMP3-202ENST00000355379 GRIN2BQ13224 1484 aa35.87■■■■□ 3.33
SCAMP3-202ENST00000355379 CTTNBP2Q8WZ74 1663 aa35.86■■■■□ 3.33
SCAMP3-202ENST00000355379 VPS8Q8N3P4 1428 aa35.85■■■■□ 3.33
SCAMP3-202ENST00000355379 ZNF608Q9ULD9 1512 aaPredicted RBP35.84■■■■□ 3.33
SCAMP3-202ENST00000355379 TRIM26Q12899 539 aaPredicted RBP35.83■■■■□ 3.33
SCAMP3-202ENST00000355379 EIF4G3O43432 1585 aaKnown RBP35.8■■■■□ 3.32
SCAMP3-202ENST00000355379 ADAMTS12P58397 1594 aa35.8■■■■□ 3.32
SCAMP3-202ENST00000355379 FHAD1B1AJZ9 1412 aa35.79■■■■□ 3.32
SCAMP3-202ENST00000355379 ARAP1Q96P48 1450 aa35.78■■■■□ 3.32
SCAMP3-202ENST00000355379 ARHGAP35Q9NRY4 1499 aa35.75■■■■□ 3.31
SCAMP3-202ENST00000355379 RANGAP1P46060 587 aaPredicted RBP35.73■■■■□ 3.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms