RNA–Protein interactions for RNA: ENST00000347048.8

PTPA-202, Transcript of protein phosphatase 2 phosphatase activator, humanhuman

TSL 1 (best) BASIC

Gene PTPA, Length 1,989 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPA-202ENST00000347048 NISCHQ9Y2I1 1504 aa50.33■■■■■ 5.65
PTPA-202ENST00000347048 CCDC180Q9P1Z9 1646 aa43■■■■■ 4.47
PTPA-202ENST00000347048 ZCCHC6Q5VYS8 1495 aaKnown RBP42.63■■■■■ 4.41
PTPA-202ENST00000347048 SHROOM4Q9ULL8 1493 aa42.43■■■■■ 4.38
PTPA-202ENST00000347048 SUPT5HO00267 1087 aaKnown RBP41.67■■■■■ 4.26
PTPA-202ENST00000347048 DCAF1Q9Y4B6 1507 aa41.55■■■■■ 4.24
PTPA-202ENST00000347048 DCAF8L2P0C7V8 631 aa41.15■■■■■ 4.18
PTPA-202ENST00000347048 ABCC9O60706 1549 aa41.12■■■■■ 4.17
PTPA-202ENST00000347048 CHIC1Q5VXU3 224 aa40.76■■■■■ 4.12
PTPA-202ENST00000347048 MYO15BQ96JP2 1530 aa40.54■■■■■ 4.08
PTPA-202ENST00000347048 SCRIBQ14160 1630 aa39.92■■■■□ 3.98
PTPA-202ENST00000347048 NACADO15069 1562 aa39.85■■■■□ 3.97
PTPA-202ENST00000347048 RSF1Q96T23 1441 aaPredicted RBP39.75■■■■□ 3.95
PTPA-202ENST00000347048 RB1CC1Q8TDY2 1594 aa39.7■■■■□ 3.95
PTPA-202ENST00000347048 HRCP23327 699 aa39.64■■■■□ 3.94
PTPA-202ENST00000347048 PCGF6Q9BYE7 350 aa39.37■■■■□ 3.89
PTPA-202ENST00000347048 LOC105371045A0A1W2PR82 267 aa39.32■■■■□ 3.88
PTPA-202ENST00000347048 CECR2Q9BXF3 1484 aa39.03■■■■□ 3.84
PTPA-202ENST00000347048 TRIM41Q8WV44 630 aa39.01■■■■□ 3.84
PTPA-202ENST00000347048 MROH2BQ7Z745 1585 aa38.99■■■■□ 3.83
PTPA-202ENST00000347048 UNC13AQ9UPW8 1703 aa38.92■■■■□ 3.82
PTPA-202ENST00000347048 TRIM26Q12899 539 aaPredicted RBP38.89■■■■□ 3.82
PTPA-202ENST00000347048 WIZO95785 1651 aa38.78■■■■□ 3.8
PTPA-202ENST00000347048 BAZ1AQ9NRL2 1556 aaPredicted RBP38.76■■■■□ 3.79
PTPA-202ENST00000347048 PABPN1Q86U42 306 aaKnown RBP eCLIP38.68■■■■□ 3.78
PTPA-202ENST00000347048 BICRAQ9NZM4 1560 aa38.62■■■■□ 3.77
PTPA-202ENST00000347048 EIF4G1Q04637 1599 aaKnown RBP38.48■■■■□ 3.75
PTPA-202ENST00000347048 PPARGC1BQ86YN6 1023 aaKnown RBP38.46■■■■□ 3.75
PTPA-202ENST00000347048 FAM9AQ8IZU1 332 aaPredicted RBP38.41■■■■□ 3.74
PTPA-202ENST00000347048 TOP2AP11388 1531 aaKnown RBP38.36■■■■□ 3.73
PTPA-202ENST00000347048 SMARCA4P51532 1647 aa38.33■■■■□ 3.73
PTPA-202ENST00000347048 ZEB1P37275 1124 aaPredicted RBP38.25■■■■□ 3.71
PTPA-202ENST00000347048 SMARCA2P51531 1590 aa38.08■■■■□ 3.69
PTPA-202ENST00000347048 CCDC88BA6NC98 1476 aa38.05■■■■□ 3.68
PTPA-202ENST00000347048 EHMT2Q96KQ7 1210 aa37.86■■■■□ 3.65
PTPA-202ENST00000347048 ABCC8Q09428 1581 aa37.84■■■■□ 3.65
PTPA-202ENST00000347048 PEG3Q9GZU2 1588 aa37.74■■■■□ 3.63
PTPA-202ENST00000347048 EEA1Q15075 1411 aa37.71■■■■□ 3.63
PTPA-202ENST00000347048 WRNQ14191 1432 aaPredicted RBP eCLIP37.63■■■■□ 3.611e-6■■□□□ 12
PTPA-202ENST00000347048 TNIKQ9UKE5 1360 aa37.52■■■■□ 3.6
PTPA-202ENST00000347048 SOGA1O94964 1423 aa37.49■■■■□ 3.59
PTPA-202ENST00000347048 CEP162Q5TB80 1403 aa37.47■■■■□ 3.59
PTPA-202ENST00000347048 CSRNP3Q8WYN3 585 aa37.38■■■■□ 3.57
PTPA-202ENST00000347048 GOLGA3Q08378 1498 aa37.3■■■■□ 3.56
PTPA-202ENST00000347048 ATAD2BQ9ULI0 1458 aa37.28■■■■□ 3.56
PTPA-202ENST00000347048 RUSC2Q8N2Y8 1516 aa37.25■■■■□ 3.55
PTPA-202ENST00000347048 BAZ1BQ9UIG0 1483 aaKnown RBP37.18■■■■□ 3.54
PTPA-202ENST00000347048 SYNJ1O43426 1573 aa37.15■■■■□ 3.54
PTPA-202ENST00000347048 KIF21BO75037 1637 aa37.14■■■■□ 3.54
PTPA-202ENST00000347048 CC2D2AQ9P2K1 1620 aa37.14■■■■□ 3.54
PTPA-202ENST00000347048 CEP164Q9UPV0 1460 aa37.11■■■■□ 3.53
PTPA-202ENST00000347048 UBTFP17480 764 aaKnown RBP37.09■■■■□ 3.53
PTPA-202ENST00000347048 CCER1Q8TC90 406 aaPredicted RBP37.09■■■■□ 3.53
PTPA-202ENST00000347048 DNAJC5BQ9UF47 199 aa37.09■■■■□ 3.53
PTPA-202ENST00000347048 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP37.06■■■■□ 3.52
PTPA-202ENST00000347048 NCAPD3P42695 1498 aa36.84■■■■□ 3.49
PTPA-202ENST00000347048 TOP2BQ02880 1626 aa36.82■■■■□ 3.49
PTPA-202ENST00000347048 CLIP1P30622 1438 aa36.78■■■■□ 3.48
PTPA-202ENST00000347048 BIVM-ERCC5R4GMW8 1640 aa36.75■■■■□ 3.47
PTPA-202ENST00000347048 TTBK1Q5TCY1 1321 aaPredicted RBP36.73■■■■□ 3.47
PTPA-202ENST00000347048 HMGXB3Q12766 1538 aa36.71■■■■□ 3.47
PTPA-202ENST00000347048 VPS8Q8N3P4 1428 aa36.7■■■■□ 3.47
PTPA-202ENST00000347048 RAPGEF2Q9Y4G8 1499 aa36.64■■■■□ 3.46
PTPA-202ENST00000347048 ERICH3Q5RHP9 1530 aa36.56■■■■□ 3.44
PTPA-202ENST00000347048 PRXQ9BXM0 1461 aa36.44■■■■□ 3.42
PTPA-202ENST00000347048 DIEXFQ68CQ4 756 aaKnown RBP36.42■■■■□ 3.42
PTPA-202ENST00000347048 APLP2Q06481 763 aa36.42■■■■□ 3.42
PTPA-202ENST00000347048 SCAF1Q9H7N4 1312 aaKnown RBP36.4■■■■□ 3.42
PTPA-202ENST00000347048 CUX1P39880 1505 aa36.34■■■■□ 3.41
PTPA-202ENST00000347048 CFTRP13569 1480 aa36.32■■■■□ 3.4
PTPA-202ENST00000347048 KIF27Q86VH2 1401 aa36.25■■■■□ 3.39
PTPA-202ENST00000347048 ZNF316A6NFI3 1004 aaPredicted RBP36.23■■■■□ 3.39
PTPA-202ENST00000347048 HNRNPUL2Q1KMD3 747 aaKnown RBP36.21■■■■□ 3.39
PTPA-202ENST00000347048 PRDM2Q13029 1718 aa36.21■■■■□ 3.39
PTPA-202ENST00000347048 ACIN1Q9UKV3 1341 aaKnown RBP36.2■■■■□ 3.39
PTPA-202ENST00000347048 ARAP1Q96P48 1450 aa36.19■■■■□ 3.38
PTPA-202ENST00000347048 CENPBP07199 599 aaPredicted RBP36.11■■■■□ 3.37
PTPA-202ENST00000347048 PELP1Q8IZL8 1130 aaKnown RBP36.1■■■■□ 3.37
PTPA-202ENST00000347048 RANGAP1P46060 587 aaPredicted RBP36.04■■■■□ 3.36
PTPA-202ENST00000347048 NEUROD1Q13562 356 aa36■■■■□ 3.35
PTPA-202ENST00000347048 CLSPNQ9HAW4 1339 aa35.99■■■■□ 3.35
PTPA-202ENST00000347048 RRBP1Q9P2E9 1410 aaKnown RBP35.89■■■■□ 3.34
PTPA-202ENST00000347048 NESP48681 1621 aa35.88■■■■□ 3.33
PTPA-202ENST00000347048 ARHGAP35Q9NRY4 1499 aa35.86■■■■□ 3.33
PTPA-202ENST00000347048 CADPSQ9ULU8 1353 aa35.86■■■■□ 3.33
PTPA-202ENST00000347048 KANK4Q5T7N3 995 aaPredicted RBP35.79■■■■□ 3.32
PTPA-202ENST00000347048 CUX2O14529 1486 aa35.79■■■■□ 3.32
PTPA-202ENST00000347048 DHX57Q6P158 1386 aaKnown RBP35.76■■■■□ 3.32
PTPA-202ENST00000347048 IGF1RP08069 1367 aa35.76■■■■□ 3.31
PTPA-202ENST00000347048 MAP3K1Q13233 1512 aa35.72■■■■□ 3.31
PTPA-202ENST00000347048 FGD5Q6ZNL6 1462 aa35.68■■■■□ 3.3
PTPA-202ENST00000347048 LAMC3Q9Y6N6 1575 aa35.67■■■■□ 3.3
PTPA-202ENST00000347048 GTF3C3Q9Y5Q9 886 aa35.65■■■■□ 3.3
PTPA-202ENST00000347048 CCNB3Q8WWL7 1395 aa35.65■■■■□ 3.3
PTPA-202ENST00000347048 CARMIL1Q5VZK9 1371 aa35.62■■■■□ 3.29
PTPA-202ENST00000347048 TIAM1Q13009 1591 aa35.57■■■■□ 3.29
PTPA-202ENST00000347048 MIER1Q8N108 512 aa35.55■■■■□ 3.28
PTPA-202ENST00000347048 FANCD2Q9BXW9 1451 aa35.47■■■■□ 3.27
PTPA-202ENST00000347048 FHAD1B1AJZ9 1412 aa35.45■■■■□ 3.27
PTPA-202ENST00000347048 DNMBPQ6XZF7 1577 aa35.45■■■■□ 3.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms