RNA–Protein interactions for RNA: ENST00000472397.5

SCAMP3-205, Transcript of secretory carrier membrane protein 3, humanhuman

TSL 3

Gene SCAMP3, Length 1,030 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP3-205ENST00000472397 NISCHQ9Y2I1 1504 aa25.38■■□□□ 1.65
SCAMP3-205ENST00000472397 ABCC9O60706 1549 aa23.18■■□□□ 1.3
SCAMP3-205ENST00000472397 CCDC180Q9P1Z9 1646 aa22.7■■□□□ 1.22
SCAMP3-205ENST00000472397 DNAJC5BQ9UF47 199 aa21.95■■□□□ 1.1
SCAMP3-205ENST00000472397 DCAF8L2P0C7V8 631 aa21.84■■□□□ 1.09
SCAMP3-205ENST00000472397 RB1CC1Q8TDY2 1594 aa21.78■■□□□ 1.08
SCAMP3-205ENST00000472397 PABPN1Q86U42 306 aaKnown RBP eCLIP21.66■■□□□ 1.06
SCAMP3-205ENST00000472397 NACADO15069 1562 aa21.55■■□□□ 1.04
SCAMP3-205ENST00000472397 UNC13AQ9UPW8 1703 aa21.33■■□□□ 1.01
SCAMP3-205ENST00000472397 BICRAQ9NZM4 1560 aa21.22■□□□□ 0.99
SCAMP3-205ENST00000472397 MYO15BQ96JP2 1530 aa21.06■□□□□ 0.96
SCAMP3-205ENST00000472397 ZCCHC6Q5VYS8 1495 aaKnown RBP20.97■□□□□ 0.95
SCAMP3-205ENST00000472397 SCRIBQ14160 1630 aa20.93■□□□□ 0.94
SCAMP3-205ENST00000472397 CC2D2AQ9P2K1 1620 aa20.82■□□□□ 0.92
SCAMP3-205ENST00000472397 CECR2Q9BXF3 1484 aa20.81■□□□□ 0.92
SCAMP3-205ENST00000472397 DCAF1Q9Y4B6 1507 aa20.78■□□□□ 0.92
SCAMP3-205ENST00000472397 EIF4G1Q04637 1599 aaKnown RBP20.69■□□□□ 0.9
SCAMP3-205ENST00000472397 SHROOM4Q9ULL8 1493 aa20.65■□□□□ 0.9
SCAMP3-205ENST00000472397 DNAJC5Q9H3Z4 198 aa20.12■□□□□ 0.81
SCAMP3-205ENST00000472397 ERCC6Q03468 1493 aa19.96■□□□□ 0.79
SCAMP3-205ENST00000472397 NCAPD3P42695 1498 aa19.92■□□□□ 0.78
SCAMP3-205ENST00000472397 ATAD2BQ9ULI0 1458 aa19.92■□□□□ 0.78
SCAMP3-205ENST00000472397 NESP48681 1621 aa19.87■□□□□ 0.77
SCAMP3-205ENST00000472397 SMARCA4P51532 1647 aa19.84■□□□□ 0.77
SCAMP3-205ENST00000472397 CUX2O14529 1486 aa19.81■□□□□ 0.76
SCAMP3-205ENST00000472397 SMARCA2P51531 1590 aa19.77■□□□□ 0.76
SCAMP3-205ENST00000472397 BAZ1BQ9UIG0 1483 aaKnown RBP19.73■□□□□ 0.75
SCAMP3-205ENST00000472397 HMGXB3Q12766 1538 aa19.71■□□□□ 0.75
SCAMP3-205ENST00000472397 BAZ1AQ9NRL2 1556 aaPredicted RBP19.66■□□□□ 0.74
SCAMP3-205ENST00000472397 MROH2BQ7Z745 1585 aa19.66■□□□□ 0.74
SCAMP3-205ENST00000472397 THOC2Q8NI27 1593 aaKnown RBP19.54■□□□□ 0.72
SCAMP3-205ENST00000472397 KIF21AQ7Z4S6 1674 aa19.5■□□□□ 0.71
SCAMP3-205ENST00000472397 PEG3Q9GZU2 1588 aa19.5■□□□□ 0.71
SCAMP3-205ENST00000472397 LAMC3Q9Y6N6 1575 aa19.48■□□□□ 0.71
SCAMP3-205ENST00000472397 PDS5BQ9NTI5 1447 aa19.43■□□□□ 0.7
SCAMP3-205ENST00000472397 WIZO95785 1651 aa19.43■□□□□ 0.7
SCAMP3-205ENST00000472397 TRIM41Q8WV44 630 aa19.4■□□□□ 0.7
SCAMP3-205ENST00000472397 CADPSQ9ULU8 1353 aa19.38■□□□□ 0.69
SCAMP3-205ENST00000472397 MRC2Q9UBG0 1479 aa19.3■□□□□ 0.68
SCAMP3-205ENST00000472397 WDR62O43379 1518 aa19.2■□□□□ 0.66
SCAMP3-205ENST00000472397 CEP164Q9UPV0 1460 aa19.2■□□□□ 0.66
SCAMP3-205ENST00000472397 FANCD2Q9BXW9 1451 aa19.19■□□□□ 0.66
SCAMP3-205ENST00000472397 RSF1Q96T23 1441 aaPredicted RBP19.16■□□□□ 0.66
SCAMP3-205ENST00000472397 CFTRP13569 1480 aa19.09■□□□□ 0.65
SCAMP3-205ENST00000472397 URB2Q14146 1524 aaKnown RBP19.06■□□□□ 0.64
SCAMP3-205ENST00000472397 TOP2AP11388 1531 aaKnown RBP19.05■□□□□ 0.64
SCAMP3-205ENST00000472397 OSCARQ8IYS5 282 aa19.02■□□□□ 0.64
SCAMP3-205ENST00000472397 CCDC88BA6NC98 1476 aa18.93■□□□□ 0.62
SCAMP3-205ENST00000472397 ZNF608Q9ULD9 1512 aaPredicted RBP18.91■□□□□ 0.62
SCAMP3-205ENST00000472397 TOPBP1Q92547 1522 aa18.8■□□□□ 0.6
SCAMP3-205ENST00000472397 PRDM2Q13029 1718 aa18.8■□□□□ 0.6
SCAMP3-205ENST00000472397 IFT140Q96RY7 1462 aa18.79■□□□□ 0.6
SCAMP3-205ENST00000472397 RIMBP3CA6NJZ7 1639 aa18.78■□□□□ 0.6
SCAMP3-205ENST00000472397 RIMBP3BA6NNM3 1639 aa18.78■□□□□ 0.6
SCAMP3-205ENST00000472397 RIMBP3Q9UFD9 1639 aa18.78■□□□□ 0.6
SCAMP3-205ENST00000472397 FBLN2P98095 1184 aa18.76■□□□□ 0.59
SCAMP3-205ENST00000472397 AQRO60306 1485 aaKnown RBP eCLIP18.73■□□□□ 0.59
SCAMP3-205ENST00000472397 CYB5RLQ6IPT4 315 aa18.72■□□□□ 0.59
SCAMP3-205ENST00000472397 EIF4G3O43432 1585 aaKnown RBP18.7■□□□□ 0.58
SCAMP3-205ENST00000472397 ARHGEF11O15085 1522 aa18.69■□□□□ 0.58
SCAMP3-205ENST00000472397 DNMBPQ6XZF7 1577 aa18.67■□□□□ 0.58
SCAMP3-205ENST00000472397 RAD54L2Q9Y4B4 1467 aa18.65■□□□□ 0.58
SCAMP3-205ENST00000472397 TDRD9Q8NDG6 1382 aaKnown RBP18.62■□□□□ 0.57
SCAMP3-205ENST00000472397 CHD1O14646 1710 aa18.62■□□□□ 0.57
SCAMP3-205ENST00000472397 ABCC8Q09428 1581 aa18.61■□□□□ 0.57
SCAMP3-205ENST00000472397 TARBP1Q13395 1621 aaKnown RBP18.6■□□□□ 0.57
SCAMP3-205ENST00000472397 POLA1P09884 1462 aaPredicted RBP18.6■□□□□ 0.57
SCAMP3-205ENST00000472397 TRHP20396 242 aaPredicted RBP18.59■□□□□ 0.57
SCAMP3-205ENST00000472397 SOGA1O94964 1423 aa18.56■□□□□ 0.56
SCAMP3-205ENST00000472397 ARAP1Q96P48 1450 aa18.52■□□□□ 0.56
SCAMP3-205ENST00000472397 SNAPC4Q5SXM2 1469 aa18.49■□□□□ 0.55
SCAMP3-205ENST00000472397 FGD5Q6ZNL6 1462 aa18.49■□□□□ 0.55
SCAMP3-205ENST00000472397 CHMP7Q8WUX9 453 aaPredicted RBP18.47■□□□□ 0.55
SCAMP3-205ENST00000472397 CUX1P39880 1505 aa18.45■□□□□ 0.54
SCAMP3-205ENST00000472397 SUPT5HO00267 1087 aaKnown RBP18.45■□□□□ 0.54
SCAMP3-205ENST00000472397 AEBP2Q6ZN18 517 aaPredicted RBP18.4■□□□□ 0.54
SCAMP3-205ENST00000472397 CHIC1Q5VXU3 224 aa18.37■□□□□ 0.53
SCAMP3-205ENST00000472397 GRIN2BQ13224 1484 aa18.34■□□□□ 0.53
SCAMP3-205ENST00000472397 CLASP1Q7Z460 1538 aa18.33■□□□□ 0.53
SCAMP3-205ENST00000472397 SYNJ1O43426 1573 aa18.31■□□□□ 0.52
SCAMP3-205ENST00000472397 MAGI1Q96QZ7 1491 aaPredicted RBP18.3■□□□□ 0.52
SCAMP3-205ENST00000472397 GAPVD1Q14C86 1478 aa18.29■□□□□ 0.52
SCAMP3-205ENST00000472397 SYNJ2O15056 1496 aa18.28■□□□□ 0.52
SCAMP3-205ENST00000472397 PBRM1Q86U86 1689 aa18.26■□□□□ 0.51
SCAMP3-205ENST00000472397 WDR97A6NE52 1622 aa18.26■□□□□ 0.51
SCAMP3-205ENST00000472397 ERCC6L2Q5T890 1561 aa18.2■□□□□ 0.5
SCAMP3-205ENST00000472397 ABCA10Q8WWZ4 1543 aa18.18■□□□□ 0.5
SCAMP3-205ENST00000472397 ABCA5Q8WWZ7 1642 aa18.17■□□□□ 0.5
SCAMP3-205ENST00000472397 GRIN2AQ12879 1464 aa18.12■□□□□ 0.49
SCAMP3-205ENST00000472397 WRNQ14191 1432 aaPredicted RBP eCLIP18.11■□□□□ 0.49
SCAMP3-205ENST00000472397 CEP170Q5SW79 1584 aa18.1■□□□□ 0.49
SCAMP3-205ENST00000472397 ADAMTS12P58397 1594 aa18.08■□□□□ 0.48
SCAMP3-205ENST00000472397 TOP2BQ02880 1626 aa18.02■□□□□ 0.48
SCAMP3-205ENST00000472397 FHAD1B1AJZ9 1412 aa18.02■□□□□ 0.48
SCAMP3-205ENST00000472397 NUP160Q12769 1436 aa18.02■□□□□ 0.48
SCAMP3-205ENST00000472397 BIVM-ERCC5R4GMW8 1640 aa18.01■□□□□ 0.47
SCAMP3-205ENST00000472397 PRG4Q92954 1404 aaPredicted RBP17.97■□□□□ 0.47
SCAMP3-205ENST00000472397 JPH4Q96JJ6 628 aa17.95■□□□□ 0.46
SCAMP3-205ENST00000472397 TTBK1Q5TCY1 1321 aaPredicted RBP17.94■□□□□ 0.46
SCAMP3-205ENST00000472397 SHROOM2Q13796 1616 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 105.3 ms