RNA–Protein interactions for RNA: ENST00000221922.10

CCDC9-201, Transcript of coiled-coil domain containing 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC9, Length 2,093 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-201ENST00000221922 NISCHQ9Y2I1 1504 aa48■■■■■ 5.27
CCDC9-201ENST00000221922 CCDC180Q9P1Z9 1646 aa41.51■■■■■ 4.23
CCDC9-201ENST00000221922 ZCCHC6Q5VYS8 1495 aaKnown RBP40.49■■■■■ 4.07
CCDC9-201ENST00000221922 SHROOM4Q9ULL8 1493 aa39.7■■■■□ 3.95
CCDC9-201ENST00000221922 DCAF1Q9Y4B6 1507 aa39.69■■■■□ 3.94
CCDC9-201ENST00000221922 DCAF8L2P0C7V8 631 aa39.33■■■■□ 3.89
CCDC9-201ENST00000221922 MYO15BQ96JP2 1530 aa38.92■■■■□ 3.82
CCDC9-201ENST00000221922 SUPT5HO00267 1087 aaKnown RBP38.55■■■■□ 3.76
CCDC9-201ENST00000221922 ABCC9O60706 1549 aa38.54■■■■□ 3.76
CCDC9-201ENST00000221922 NACADO15069 1562 aa38.45■■■■□ 3.75
CCDC9-201ENST00000221922 SCRIBQ14160 1630 aa38.29■■■■□ 3.72
CCDC9-201ENST00000221922 RB1CC1Q8TDY2 1594 aa37.94■■■■□ 3.66
CCDC9-201ENST00000221922 RSF1Q96T23 1441 aaPredicted RBP37.53■■■■□ 3.6
CCDC9-201ENST00000221922 CHIC1Q5VXU3 224 aa37.4■■■■□ 3.58
CCDC9-201ENST00000221922 UNC13AQ9UPW8 1703 aa37.28■■■■□ 3.56
CCDC9-201ENST00000221922 CECR2Q9BXF3 1484 aa37.25■■■■□ 3.55
CCDC9-201ENST00000221922 MROH2BQ7Z745 1585 aa37.13■■■■□ 3.53
CCDC9-201ENST00000221922 BAZ1AQ9NRL2 1556 aaPredicted RBP37■■■■□ 3.51
CCDC9-201ENST00000221922 WIZO95785 1651 aa36.88■■■■□ 3.49
CCDC9-201ENST00000221922 BICRAQ9NZM4 1560 aa36.83■■■■□ 3.49
CCDC9-201ENST00000221922 SMARCA4P51532 1647 aa36.76■■■■□ 3.47
CCDC9-201ENST00000221922 TOP2AP11388 1531 aaKnown RBP36.5■■■■□ 3.43
CCDC9-201ENST00000221922 PABPN1Q86U42 306 aaKnown RBP eCLIP36.49■■■■□ 3.43
CCDC9-201ENST00000221922 PEG3Q9GZU2 1588 aa36.27■■■■□ 3.4
CCDC9-201ENST00000221922 EIF4G1Q04637 1599 aaKnown RBP36.26■■■■□ 3.39
CCDC9-201ENST00000221922 SMARCA2P51531 1590 aa36.2■■■■□ 3.39
CCDC9-201ENST00000221922 TRIM41Q8WV44 630 aa36.19■■■■□ 3.38
CCDC9-201ENST00000221922 HRCP23327 699 aa36.17■■■■□ 3.38
CCDC9-201ENST00000221922 CCDC88BA6NC98 1476 aa36.13■■■■□ 3.37
CCDC9-201ENST00000221922 LOC105371045A0A1W2PR82 267 aa36.04■■■■□ 3.36
CCDC9-201ENST00000221922 PCGF6Q9BYE7 350 aa35.96■■■■□ 3.35
CCDC9-201ENST00000221922 ATAD2BQ9ULI0 1458 aa35.93■■■■□ 3.34
CCDC9-201ENST00000221922 BAZ1BQ9UIG0 1483 aaKnown RBP35.77■■■■□ 3.32
CCDC9-201ENST00000221922 ABCC8Q09428 1581 aa35.65■■■■□ 3.3
CCDC9-201ENST00000221922 FAM9AQ8IZU1 332 aaPredicted RBP35.55■■■■□ 3.28
CCDC9-201ENST00000221922 HMGXB3Q12766 1538 aa35.52■■■■□ 3.28
CCDC9-201ENST00000221922 NCAPD3P42695 1498 aa35.49■■■■□ 3.27
CCDC9-201ENST00000221922 TRIM26Q12899 539 aaPredicted RBP35.42■■■■□ 3.26
CCDC9-201ENST00000221922 WRNQ14191 1432 aaPredicted RBP eCLIP35.3■■■■□ 3.24
CCDC9-201ENST00000221922 PPARGC1BQ86YN6 1023 aaKnown RBP35.2■■■■□ 3.23
CCDC9-201ENST00000221922 EEA1Q15075 1411 aa35.2■■■■□ 3.22
CCDC9-201ENST00000221922 SYNJ1O43426 1573 aa35.16■■■■□ 3.22
CCDC9-201ENST00000221922 SOGA1O94964 1423 aa35.12■■■■□ 3.21
CCDC9-201ENST00000221922 EHMT2Q96KQ7 1210 aa35.02■■■■□ 3.2
CCDC9-201ENST00000221922 RUSC2Q8N2Y8 1516 aa34.95■■■■□ 3.19
CCDC9-201ENST00000221922 TOP2BQ02880 1626 aa34.95■■■■□ 3.19
CCDC9-201ENST00000221922 CFTRP13569 1480 aa34.92■■■■□ 3.18
CCDC9-201ENST00000221922 CC2D2AQ9P2K1 1620 aa34.91■■■■□ 3.18
CCDC9-201ENST00000221922 BIVM-ERCC5R4GMW8 1640 aa34.91■■■■□ 3.18
CCDC9-201ENST00000221922 CSRNP3Q8WYN3 585 aa34.91■■■■□ 3.18
CCDC9-201ENST00000221922 PRDM2Q13029 1718 aa34.84■■■■□ 3.17
CCDC9-201ENST00000221922 TNIKQ9UKE5 1360 aa34.79■■■■□ 3.16
CCDC9-201ENST00000221922 ZEB1P37275 1124 aaPredicted RBP34.76■■■■□ 3.16
CCDC9-201ENST00000221922 GOLGA3Q08378 1498 aa34.76■■■■□ 3.15
CCDC9-201ENST00000221922 KIF21BO75037 1637 aa34.74■■■■□ 3.15
CCDC9-201ENST00000221922 CEP164Q9UPV0 1460 aa34.68■■■■□ 3.14
CCDC9-201ENST00000221922 CEP162Q5TB80 1403 aa34.67■■■■□ 3.14
CCDC9-201ENST00000221922 CUX1P39880 1505 aa34.67■■■■□ 3.14
CCDC9-201ENST00000221922 CADPSQ9ULU8 1353 aa34.62■■■■□ 3.13
CCDC9-201ENST00000221922 UBTFP17480 764 aaKnown RBP34.52■■■■□ 3.12
CCDC9-201ENST00000221922 RAPGEF2Q9Y4G8 1499 aa34.38■■■■□ 3.09
CCDC9-201ENST00000221922 ERICH3Q5RHP9 1530 aa34.35■■■■□ 3.09
CCDC9-201ENST00000221922 KIF27Q86VH2 1401 aa34.33■■■■□ 3.09
CCDC9-201ENST00000221922 PRXQ9BXM0 1461 aa34.31■■■■□ 3.08
CCDC9-201ENST00000221922 FANCD2Q9BXW9 1451 aa34.26■■■■□ 3.07
CCDC9-201ENST00000221922 CLIP1P30622 1438 aa34.22■■■■□ 3.07
CCDC9-201ENST00000221922 LAMC3Q9Y6N6 1575 aa34.16■■■■□ 3.06
CCDC9-201ENST00000221922 FGD5Q6ZNL6 1462 aa34.16■■■■□ 3.06
CCDC9-201ENST00000221922 DNMBPQ6XZF7 1577 aa34.11■■■■□ 3.05
CCDC9-201ENST00000221922 NESP48681 1621 aa34.1■■■■□ 3.05
CCDC9-201ENST00000221922 CUX2O14529 1486 aa34.07■■■■□ 3.05
CCDC9-201ENST00000221922 VPS8Q8N3P4 1428 aa34.04■■■■□ 3.04
CCDC9-201ENST00000221922 TOPBP1Q92547 1522 aa33.99■■■■□ 3.03
CCDC9-201ENST00000221922 IGF1RP08069 1367 aa33.94■■■■□ 3.02
CCDC9-201ENST00000221922 DNAJC5BQ9UF47 199 aa33.92■■■■□ 3.02
CCDC9-201ENST00000221922 POLA1P09884 1462 aaPredicted RBP33.88■■■■□ 3.01
CCDC9-201ENST00000221922 ABCA10Q8WWZ4 1543 aa33.88■■■■□ 3.01
CCDC9-201ENST00000221922 PDS5BQ9NTI5 1447 aa33.84■■■■□ 3.01
CCDC9-201ENST00000221922 TTBK1Q5TCY1 1321 aaPredicted RBP33.83■■■■□ 3.01
CCDC9-201ENST00000221922 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.83■■■■□ 3.01
CCDC9-201ENST00000221922 ARAP1Q96P48 1450 aa33.82■■■■□ 3
CCDC9-201ENST00000221922 URB2Q14146 1524 aaKnown RBP33.81■■■■□ 3
CCDC9-201ENST00000221922 CCER1Q8TC90 406 aaPredicted RBP33.8■■■■□ 3
CCDC9-201ENST00000221922 CARMIL1Q5VZK9 1371 aa33.78■■■■□ 3
CCDC9-201ENST00000221922 RAD54L2Q9Y4B4 1467 aa33.78■■■■□ 3
CCDC9-201ENST00000221922 WDR97A6NE52 1622 aa33.73■■■□□ 2.99
CCDC9-201ENST00000221922 RANGAP1P46060 587 aaPredicted RBP33.73■■■□□ 2.99
CCDC9-201ENST00000221922 KIF21AQ7Z4S6 1674 aa33.72■■■□□ 2.99
CCDC9-201ENST00000221922 APLP2Q06481 763 aa33.69■■■□□ 2.98
CCDC9-201ENST00000221922 ARHGAP35Q9NRY4 1499 aa33.66■■■□□ 2.98
CCDC9-201ENST00000221922 CUL7Q14999 1698 aa33.65■■■□□ 2.98
CCDC9-201ENST00000221922 ABCA5Q8WWZ7 1642 aa33.56■■■□□ 2.96
CCDC9-201ENST00000221922 TARBP1Q13395 1621 aaKnown RBP33.44■■■□□ 2.94
CCDC9-201ENST00000221922 GAPVD1Q14C86 1478 aa33.41■■■□□ 2.94
CCDC9-201ENST00000221922 CTTNBP2Q8WZ74 1663 aa33.4■■■□□ 2.94
CCDC9-201ENST00000221922 MRC2Q9UBG0 1479 aa33.39■■■□□ 2.94
CCDC9-201ENST00000221922 TDRD9Q8NDG6 1382 aaKnown RBP33.36■■■□□ 2.93
CCDC9-201ENST00000221922 EFCAB5A4FU69 1503 aa33.33■■■□□ 2.93
CCDC9-201ENST00000221922 MAP3K1Q13233 1512 aa33.32■■■□□ 2.92
CCDC9-201ENST00000221922 SCAF1Q9H7N4 1312 aaKnown RBP33.28■■■□□ 2.92
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms