RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 NISCHQ9Y2I1 1504 aa26.56■■□□□ 1.84
LDLR-201ENST00000252444 DCAF8L2P0C7V8 631 aa24.17■■□□□ 1.46
LDLR-201ENST00000252444 CCDC180Q9P1Z9 1646 aa23.02■■□□□ 1.28
LDLR-201ENST00000252444 SHROOM4Q9ULL8 1493 aa22.76■■□□□ 1.23
LDLR-201ENST00000252444 SUPT5HO00267 1087 aaKnown RBP22.65■■□□□ 1.22
LDLR-201ENST00000252444 ABCC9O60706 1549 aa22.25■■□□□ 1.15
LDLR-201ENST00000252444 ZCCHC6Q5VYS8 1495 aaKnown RBP22.15■■□□□ 1.14
LDLR-201ENST00000252444 FAM9AQ8IZU1 332 aaPredicted RBP22.02■■□□□ 1.11
LDLR-201ENST00000252444 RB1CC1Q8TDY2 1594 aa21.93■■□□□ 1.1
LDLR-201ENST00000252444 NACADO15069 1562 aa21.91■■□□□ 1.1
LDLR-201ENST00000252444 DCAF1Q9Y4B6 1507 aa21.89■■□□□ 1.09
LDLR-201ENST00000252444 APLP2Q06481 763 aa21.61■■□□□ 1.05
LDLR-201ENST00000252444 MYO15BQ96JP2 1530 aa21.6■■□□□ 1.05
LDLR-201ENST00000252444 TRIM41Q8WV44 630 aa21.57■■□□□ 1.04
LDLR-201ENST00000252444 SCRIBQ14160 1630 aa21.46■■□□□ 1.03
LDLR-201ENST00000252444 PABPN1Q86U42 306 aaKnown RBP eCLIP21.28■■□□□ 1
LDLR-201ENST00000252444 UBTFP17480 764 aaKnown RBP21.02■□□□□ 0.96
LDLR-201ENST00000252444 BAZ1AQ9NRL2 1556 aaPredicted RBP20.98■□□□□ 0.95
LDLR-201ENST00000252444 CHIC1Q5VXU3 224 aa20.85■□□□□ 0.93
LDLR-201ENST00000252444 EHMT2Q96KQ7 1210 aa20.8■□□□□ 0.92
LDLR-201ENST00000252444 ZEB1P37275 1124 aaPredicted RBP20.78■□□□□ 0.92
LDLR-201ENST00000252444 BAZ1BQ9UIG0 1483 aaKnown RBP20.73■□□□□ 0.91
LDLR-201ENST00000252444 SMARCA2P51531 1590 aa20.72■□□□□ 0.91
LDLR-201ENST00000252444 RSF1Q96T23 1441 aaPredicted RBP20.68■□□□□ 0.9
LDLR-201ENST00000252444 ATP1B4Q9UN42 357 aaPredicted RBP20.57■□□□□ 0.88
LDLR-201ENST00000252444 EEA1Q15075 1411 aa20.56■□□□□ 0.88
LDLR-201ENST00000252444 RANGAP1P46060 587 aaPredicted RBP20.44■□□□□ 0.86
LDLR-201ENST00000252444 TRIM26Q12899 539 aaPredicted RBP20.37■□□□□ 0.85
LDLR-201ENST00000252444 CSRNP3Q8WYN3 585 aa20.37■□□□□ 0.85
LDLR-201ENST00000252444 TOP2AP11388 1531 aaKnown RBP20.37■□□□□ 0.85
LDLR-201ENST00000252444 SMARCA4P51532 1647 aa20.29■□□□□ 0.84
LDLR-201ENST00000252444 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.25■□□□□ 0.83
LDLR-201ENST00000252444 HNRNPUL2Q1KMD3 747 aaKnown RBP20.25■□□□□ 0.83
LDLR-201ENST00000252444 CECR2Q9BXF3 1484 aa20.24■□□□□ 0.83
LDLR-201ENST00000252444 PCGF6Q9BYE7 350 aa20.24■□□□□ 0.83
LDLR-201ENST00000252444 WRNQ14191 1432 aaPredicted RBP eCLIP20.23■□□□□ 0.83
LDLR-201ENST00000252444 MROH2BQ7Z745 1585 aa20.21■□□□□ 0.83
LDLR-201ENST00000252444 CCER1Q8TC90 406 aaPredicted RBP20.21■□□□□ 0.83
LDLR-201ENST00000252444 PDS5BQ9NTI5 1447 aa20.19■□□□□ 0.82
LDLR-201ENST00000252444 CDK11AQ9UQ88 783 aaPredicted RBP20.16■□□□□ 0.82
LDLR-201ENST00000252444 KIF27Q86VH2 1401 aa20.14■□□□□ 0.81
LDLR-201ENST00000252444 ATAD2BQ9ULI0 1458 aa20.12■□□□□ 0.81
LDLR-201ENST00000252444 PELP1Q8IZL8 1130 aaKnown RBP20.12■□□□□ 0.81
LDLR-201ENST00000252444 ERCC6Q03468 1493 aa20.11■□□□□ 0.81
LDLR-201ENST00000252444 TTBK1Q5TCY1 1321 aaPredicted RBP20.09■□□□□ 0.81
LDLR-201ENST00000252444 ABCC8Q09428 1581 aa20.08■□□□□ 0.8
LDLR-201ENST00000252444 GOLGA3Q08378 1498 aa20.07■□□□□ 0.8
LDLR-201ENST00000252444 ACIN1Q9UKV3 1341 aaKnown RBP20.06■□□□□ 0.8
LDLR-201ENST00000252444 CCDC88BA6NC98 1476 aa20.03■□□□□ 0.8
LDLR-201ENST00000252444 CEP164Q9UPV0 1460 aa20.02■□□□□ 0.8
LDLR-201ENST00000252444 LOC105371045A0A1W2PR82 267 aa20.01■□□□□ 0.79
LDLR-201ENST00000252444 FBLN2P98095 1184 aa19.99■□□□□ 0.79
LDLR-201ENST00000252444 NCAPD3P42695 1498 aa19.99■□□□□ 0.79
LDLR-201ENST00000252444 MYT1LQ9UL68 1186 aa19.95■□□□□ 0.78
LDLR-201ENST00000252444 WIZO95785 1651 aa19.95■□□□□ 0.78
LDLR-201ENST00000252444 CADPSQ9ULU8 1353 aa19.95■□□□□ 0.78
LDLR-201ENST00000252444 HMGXB3Q12766 1538 aa19.93■□□□□ 0.78
LDLR-201ENST00000252444 EIF4G1Q04637 1599 aaKnown RBP19.91■□□□□ 0.78
LDLR-201ENST00000252444 CHMP7Q8WUX9 453 aaPredicted RBP19.87■□□□□ 0.77
LDLR-201ENST00000252444 NPM1P06748 294 aaKnown RBP eCLIP19.84■□□□□ 0.77
LDLR-201ENST00000252444 TNIKQ9UKE5 1360 aa19.82■□□□□ 0.76
LDLR-201ENST00000252444 CLIP1P30622 1438 aa19.78■□□□□ 0.76
LDLR-201ENST00000252444 FAM50AQ14320 339 aaKnown RBP19.76■□□□□ 0.75
LDLR-201ENST00000252444 FHAD1B1AJZ9 1412 aa19.71■□□□□ 0.75
LDLR-201ENST00000252444 CENPBP07199 599 aaPredicted RBP19.71■□□□□ 0.75
LDLR-201ENST00000252444 CUX2O14529 1486 aa19.7■□□□□ 0.74
LDLR-201ENST00000252444 ITGAEP38570 1179 aa19.66■□□□□ 0.74
LDLR-201ENST00000252444 SOGA1O94964 1423 aa19.65■□□□□ 0.74
LDLR-201ENST00000252444 FANCD2Q9BXW9 1451 aa19.65■□□□□ 0.74
LDLR-201ENST00000252444 CARMIL1Q5VZK9 1371 aa19.63■□□□□ 0.73
LDLR-201ENST00000252444 BICRAQ9NZM4 1560 aa19.63■□□□□ 0.73
LDLR-201ENST00000252444 PEG3Q9GZU2 1588 aa19.61■□□□□ 0.73
LDLR-201ENST00000252444 CEP162Q5TB80 1403 aa19.61■□□□□ 0.73
LDLR-201ENST00000252444 MTUS2Q5JR59 1369 aa19.58■□□□□ 0.73
LDLR-201ENST00000252444 CARMIL2Q6F5E8 1435 aa19.58■□□□□ 0.73
LDLR-201ENST00000252444 PPARGC1BQ86YN6 1023 aaKnown RBP19.57■□□□□ 0.72
LDLR-201ENST00000252444 CC2D2AQ9P2K1 1620 aa19.56■□□□□ 0.72
LDLR-201ENST00000252444 TRIM52Q96A61 297 aa19.55■□□□□ 0.72
LDLR-201ENST00000252444 HRCP23327 699 aa19.52■□□□□ 0.72
LDLR-201ENST00000252444 P3H3Q8IVL6 736 aa19.52■□□□□ 0.72
LDLR-201ENST00000252444 CFTRP13569 1480 aa19.51■□□□□ 0.71
LDLR-201ENST00000252444 RAPGEF2Q9Y4G8 1499 aa19.49■□□□□ 0.71
LDLR-201ENST00000252444 PLEKHD1A6NEE1 506 aa19.46■□□□□ 0.71
LDLR-201ENST00000252444 FMN1Q68DA7 1419 aa19.46■□□□□ 0.71
LDLR-201ENST00000252444 UNC13AQ9UPW8 1703 aa19.46■□□□□ 0.71
LDLR-201ENST00000252444 LAMC3Q9Y6N6 1575 aa19.45■□□□□ 0.7
LDLR-201ENST00000252444 MRC2Q9UBG0 1479 aa19.4■□□□□ 0.7
LDLR-201ENST00000252444 TSPY4P0CV99 314 aa19.38■□□□□ 0.69
LDLR-201ENST00000252444 TSPY10P0CW01 314 aa19.38■□□□□ 0.69
LDLR-201ENST00000252444 ESF1Q9H501 851 aaKnown RBP19.35■□□□□ 0.69
LDLR-201ENST00000252444 VPS8Q8N3P4 1428 aa19.32■□□□□ 0.68
LDLR-201ENST00000252444 IFT140Q96RY7 1462 aa19.32■□□□□ 0.68
LDLR-201ENST00000252444 ZNF777Q9ULD5 760 aaPredicted RBP19.31■□□□□ 0.68
LDLR-201ENST00000252444 FGD5Q6ZNL6 1462 aa19.3■□□□□ 0.68
LDLR-201ENST00000252444 NEFLP07196 543 aa19.3■□□□□ 0.68
LDLR-201ENST00000252444 DNMBPQ6XZF7 1577 aa19.29■□□□□ 0.68
LDLR-201ENST00000252444 ERICH3Q5RHP9 1530 aa19.26■□□□□ 0.67
LDLR-201ENST00000252444 GAPVD1Q14C86 1478 aa19.26■□□□□ 0.67
LDLR-201ENST00000252444 TOP2BQ02880 1626 aa19.26■□□□□ 0.67
LDLR-201ENST00000252444 GRIN2BQ13224 1484 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms