RNA–Protein interactions for RNA: ENST00000460627.5

CHRD-208, Transcript of chordin, humanhuman

TSL 2

Gene CHRD, Length 4,719 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRD-208ENST00000460627 NISCHQ9Y2I1 1504 aa32.26■■■□□ 2.76
CHRD-208ENST00000460627 DCAF8L2P0C7V8 631 aa31.63■■■□□ 2.65
CHRD-208ENST00000460627 SUPT5HO00267 1087 aaKnown RBP29.81■■■□□ 2.36
CHRD-208ENST00000460627 SHROOM4Q9ULL8 1493 aa29.67■■■□□ 2.34
CHRD-208ENST00000460627 EHMT2Q96KQ7 1210 aa28.22■■■□□ 2.11
CHRD-208ENST00000460627 APLP2Q06481 763 aa27.95■■■□□ 2.06
CHRD-208ENST00000460627 FAM9AQ8IZU1 332 aaPredicted RBP27.94■■■□□ 2.06
CHRD-208ENST00000460627 TRIM41Q8WV44 630 aa27.83■■■□□ 2.05
CHRD-208ENST00000460627 ABCC9O60706 1549 aa27.61■■■□□ 2.01
CHRD-208ENST00000460627 UBTFP17480 764 aaKnown RBP27.32■■□□□ 1.96
CHRD-208ENST00000460627 RANGAP1P46060 587 aaPredicted RBP27.28■■□□□ 1.96
CHRD-208ENST00000460627 TTBK1Q5TCY1 1321 aaPredicted RBP27.19■■□□□ 1.94
CHRD-208ENST00000460627 PCGF6Q9BYE7 350 aa27.13■■□□□ 1.93
CHRD-208ENST00000460627 PABPN1Q86U42 306 aaKnown RBP eCLIP27.08■■□□□ 1.932e-8■■■■□ 25.2
CHRD-208ENST00000460627 ATP1B4Q9UN42 357 aaPredicted RBP27.06■■□□□ 1.92
CHRD-208ENST00000460627 CHIC1Q5VXU3 224 aa26.92■■□□□ 1.9
CHRD-208ENST00000460627 CCDC180Q9P1Z9 1646 aa26.85■■□□□ 1.89
CHRD-208ENST00000460627 ZEB1P37275 1124 aaPredicted RBP26.76■■□□□ 1.87
CHRD-208ENST00000460627 ZCCHC6Q5VYS8 1495 aaKnown RBP26.76■■□□□ 1.87
CHRD-208ENST00000460627 CCER1Q8TC90 406 aaPredicted RBP26.7■■□□□ 1.86
CHRD-208ENST00000460627 LOC105371045A0A1W2PR82 267 aa26.51■■□□□ 1.83
CHRD-208ENST00000460627 TRIM26Q12899 539 aaPredicted RBP26.43■■□□□ 1.82
CHRD-208ENST00000460627 PPARGC1BQ86YN6 1023 aaKnown RBP26.43■■□□□ 1.82
CHRD-208ENST00000460627 SCRIBQ14160 1630 aa26.41■■□□□ 1.82
CHRD-208ENST00000460627 PELP1Q8IZL8 1130 aaKnown RBP26.4■■□□□ 1.82
CHRD-208ENST00000460627 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.35■■□□□ 1.81
CHRD-208ENST00000460627 HNRNPUL2Q1KMD3 747 aaKnown RBP26.35■■□□□ 1.81
CHRD-208ENST00000460627 RB1CC1Q8TDY2 1594 aa26.15■■□□□ 1.78
CHRD-208ENST00000460627 ITGAEP38570 1179 aa26.11■■□□□ 1.77
CHRD-208ENST00000460627 NACADO15069 1562 aa26.02■■□□□ 1.76
CHRD-208ENST00000460627 MYT1LQ9UL68 1186 aa26.02■■□□□ 1.76
CHRD-208ENST00000460627 CENPBP07199 599 aaPredicted RBP26.01■■□□□ 1.75
CHRD-208ENST00000460627 CSRNP3Q8WYN3 585 aa25.91■■□□□ 1.74
CHRD-208ENST00000460627 FBLN2P98095 1184 aa25.8■■□□□ 1.72
CHRD-208ENST00000460627 DCAF1Q9Y4B6 1507 aa25.79■■□□□ 1.72
CHRD-208ENST00000460627 HRCP23327 699 aa25.76■■□□□ 1.71
CHRD-208ENST00000460627 FAM50AQ14320 339 aaKnown RBP25.7■■□□□ 1.71
CHRD-208ENST00000460627 RSF1Q96T23 1441 aaPredicted RBP25.62■■□□□ 1.69
CHRD-208ENST00000460627 P3H3Q8IVL6 736 aa25.48■■□□□ 1.67
CHRD-208ENST00000460627 NEFLP07196 543 aa25.48■■□□□ 1.67
CHRD-208ENST00000460627 TRIM52Q96A61 297 aa25.44■■□□□ 1.66
CHRD-208ENST00000460627 YTHDC1Q96MU7 727 aaKnown RBP25.44■■□□□ 1.66
CHRD-208ENST00000460627 POLR3GLQ9BT43 218 aa25.43■■□□□ 1.66
CHRD-208ENST00000460627 BAZ1BQ9UIG0 1483 aaKnown RBP25.39■■□□□ 1.65
CHRD-208ENST00000460627 CDK11AQ9UQ88 783 aaPredicted RBP25.38■■□□□ 1.65
CHRD-208ENST00000460627 BAZ1AQ9NRL2 1556 aaPredicted RBP25.36■■□□□ 1.65
CHRD-208ENST00000460627 ARID3CA6NKF2 412 aa25.24■■□□□ 1.63
CHRD-208ENST00000460627 MYO15BQ96JP2 1530 aa25.2■■□□□ 1.62
CHRD-208ENST00000460627 EEA1Q15075 1411 aa25.2■■□□□ 1.62
CHRD-208ENST00000460627 CECR2Q9BXF3 1484 aa25.19■■□□□ 1.62
CHRD-208ENST00000460627 NEUROD1Q13562 356 aa25.18■■□□□ 1.62
CHRD-208ENST00000460627 WRNQ14191 1432 aaPredicted RBP eCLIP25.16■■□□□ 1.62
CHRD-208ENST00000460627 CHMP7Q8WUX9 453 aaPredicted RBP25.08■■□□□ 1.61
CHRD-208ENST00000460627 ZNF777Q9ULD5 760 aaPredicted RBP25.08■■□□□ 1.6
CHRD-208ENST00000460627 DIEXFQ68CQ4 756 aaKnown RBP25.04■■□□□ 1.6
CHRD-208ENST00000460627 NPM1P06748 294 aaKnown RBP eCLIP25.03■■□□□ 1.6
CHRD-208ENST00000460627 CNGB1Q14028 1251 aaPredicted RBP25.02■■□□□ 1.6
CHRD-208ENST00000460627 ERICH6Q7L0X2 663 aa25.02■■□□□ 1.6
CHRD-208ENST00000460627 SLC4A1APQ9BWU0 796 aaKnown RBP25■■□□□ 1.59
CHRD-208ENST00000460627 CLIP1P30622 1438 aa24.98■■□□□ 1.59
CHRD-208ENST00000460627 KIF27Q86VH2 1401 aa24.96■■□□□ 1.59
CHRD-208ENST00000460627 ZNF326Q5BKZ1 582 aaKnown RBP24.94■■□□□ 1.58
CHRD-208ENST00000460627 GOLGA3Q08378 1498 aa24.93■■□□□ 1.58
CHRD-208ENST00000460627 MROH2BQ7Z745 1585 aa24.9■■□□□ 1.58
CHRD-208ENST00000460627 MTUS2Q5JR59 1369 aa24.86■■□□□ 1.57
CHRD-208ENST00000460627 SMARCA2P51531 1590 aa24.86■■□□□ 1.57
CHRD-208ENST00000460627 ERCC6Q03468 1493 aa24.79■■□□□ 1.56
CHRD-208ENST00000460627 CEP164Q9UPV0 1460 aa24.79■■□□□ 1.56
CHRD-208ENST00000460627 ZNF316A6NFI3 1004 aaPredicted RBP24.77■■□□□ 1.56
CHRD-208ENST00000460627 CEP162Q5TB80 1403 aa24.76■■□□□ 1.55
CHRD-208ENST00000460627 TNIKQ9UKE5 1360 aa24.75■■□□□ 1.55
CHRD-208ENST00000460627 ANP32CO43423 234 aa24.74■■□□□ 1.55
CHRD-208ENST00000460627 TSPY4P0CV99 314 aa24.72■■□□□ 1.55
CHRD-208ENST00000460627 TSPY10P0CW01 314 aa24.72■■□□□ 1.55
CHRD-208ENST00000460627 CCDC88BA6NC98 1476 aa24.71■■□□□ 1.55
CHRD-208ENST00000460627 ESF1Q9H501 851 aaKnown RBP24.7■■□□□ 1.54
CHRD-208ENST00000460627 TONSLQ96HA7 1378 aa24.65■■□□□ 1.54
CHRD-208ENST00000460627 CHIC2Q9UKJ5 165 aa24.63■■□□□ 1.53
CHRD-208ENST00000460627 PLEKHD1A6NEE1 506 aa24.63■■□□□ 1.53
CHRD-208ENST00000460627 PDS5BQ9NTI5 1447 aa24.6■■□□□ 1.53
CHRD-208ENST00000460627 BCANQ96GW7 911 aa24.59■■□□□ 1.53
CHRD-208ENST00000460627 CUX2O14529 1486 aa24.58■■□□□ 1.52
CHRD-208ENST00000460627 TOP2AP11388 1531 aaKnown RBP24.57■■□□□ 1.52
CHRD-208ENST00000460627 CARMIL1Q5VZK9 1371 aa24.55■■□□□ 1.52
CHRD-208ENST00000460627 ATAD2BQ9ULI0 1458 aa24.5■■□□□ 1.51
CHRD-208ENST00000460627 ACIN1Q9UKV3 1341 aaKnown RBP24.48■■□□□ 1.51
CHRD-208ENST00000460627 CHGAP10645 457 aaKnown RBP24.48■■□□□ 1.51
CHRD-208ENST00000460627 SOGA1O94964 1423 aa24.48■■□□□ 1.51
CHRD-208ENST00000460627 STAG3Q9UJ98 1225 aa24.47■■□□□ 1.51
CHRD-208ENST00000460627 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.47■■□□□ 1.512e-7■□□□□ 11.1
CHRD-208ENST00000460627 CADPSQ9ULU8 1353 aa24.46■■□□□ 1.51
CHRD-208ENST00000460627 WIZO95785 1651 aa24.46■■□□□ 1.51
CHRD-208ENST00000460627 KCNH8Q96L42 1107 aa24.44■■□□□ 1.5
CHRD-208ENST00000460627 FHAD1B1AJZ9 1412 aa24.42■■□□□ 1.5
CHRD-208ENST00000460627 DAXXQ9UER7 740 aaPredicted RBP24.42■■□□□ 1.5
CHRD-208ENST00000460627 SMARCA4P51532 1647 aa24.4■■□□□ 1.5
CHRD-208ENST00000460627 CFDP1Q9UEE9 299 aaPredicted RBP24.38■■□□□ 1.49
CHRD-208ENST00000460627 ABCC8Q09428 1581 aa24.36■■□□□ 1.49
CHRD-208ENST00000460627 RRP7BPQ9NSQ0 103 aa24.35■■□□□ 1.49
CHRD-208ENST00000460627 NEFMP07197 916 aa24.33■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms