RNA–Protein interactions for RNA: ENST00000490999.5

SCAMP3-208, Transcript of secretory carrier membrane protein 3, humanhuman

TSL 2

Gene SCAMP3, Length 1,011 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP3-208ENST00000490999 NISCHQ9Y2I1 1504 aa39.18■■■■□ 3.86
SCAMP3-208ENST00000490999 ABCC9O60706 1549 aa35.87■■■■□ 3.33
SCAMP3-208ENST00000490999 CCDC180Q9P1Z9 1646 aa35.31■■■■□ 3.24
SCAMP3-208ENST00000490999 DNAJC5BQ9UF47 199 aa33.98■■■■□ 3.03
SCAMP3-208ENST00000490999 RB1CC1Q8TDY2 1594 aa33.84■■■■□ 3.01
SCAMP3-208ENST00000490999 NACADO15069 1562 aa33.47■■■□□ 2.95
SCAMP3-208ENST00000490999 PABPN1Q86U42 306 aaKnown RBP eCLIP33.3■■■□□ 2.92
SCAMP3-208ENST00000490999 DCAF8L2P0C7V8 631 aa33.27■■■□□ 2.92
SCAMP3-208ENST00000490999 UNC13AQ9UPW8 1703 aa33.08■■■□□ 2.89
SCAMP3-208ENST00000490999 BICRAQ9NZM4 1560 aa32.92■■■□□ 2.86
SCAMP3-208ENST00000490999 MYO15BQ96JP2 1530 aa32.81■■■□□ 2.84
SCAMP3-208ENST00000490999 ZCCHC6Q5VYS8 1495 aaKnown RBP32.42■■■□□ 2.78
SCAMP3-208ENST00000490999 SHROOM4Q9ULL8 1493 aa32.33■■■□□ 2.77
SCAMP3-208ENST00000490999 CC2D2AQ9P2K1 1620 aa32.33■■■□□ 2.77
SCAMP3-208ENST00000490999 CECR2Q9BXF3 1484 aa32.31■■■□□ 2.76
SCAMP3-208ENST00000490999 SCRIBQ14160 1630 aa32.29■■■□□ 2.76
SCAMP3-208ENST00000490999 DCAF1Q9Y4B6 1507 aa32.26■■■□□ 2.75
SCAMP3-208ENST00000490999 EIF4G1Q04637 1599 aaKnown RBP32.15■■■□□ 2.74
SCAMP3-208ENST00000490999 DNAJC5Q9H3Z4 198 aa31.42■■■□□ 2.62
SCAMP3-208ENST00000490999 CUX2O14529 1486 aa30.99■■■□□ 2.55
SCAMP3-208ENST00000490999 ERCC6Q03468 1493 aa30.97■■■□□ 2.55
SCAMP3-208ENST00000490999 NCAPD3P42695 1498 aa30.9■■■□□ 2.54
SCAMP3-208ENST00000490999 ATAD2BQ9ULI0 1458 aa30.81■■■□□ 2.52
SCAMP3-208ENST00000490999 NESP48681 1621 aa30.69■■■□□ 2.5
SCAMP3-208ENST00000490999 SMARCA4P51532 1647 aa30.69■■■□□ 2.5
SCAMP3-208ENST00000490999 HMGXB3Q12766 1538 aa30.68■■■□□ 2.5
SCAMP3-208ENST00000490999 SMARCA2P51531 1590 aa30.66■■■□□ 2.5
SCAMP3-208ENST00000490999 BAZ1BQ9UIG0 1483 aaKnown RBP30.5■■■□□ 2.47
SCAMP3-208ENST00000490999 THOC2Q8NI27 1593 aaKnown RBP30.45■■■□□ 2.47
SCAMP3-208ENST00000490999 BAZ1AQ9NRL2 1556 aaPredicted RBP30.43■■■□□ 2.46
SCAMP3-208ENST00000490999 PEG3Q9GZU2 1588 aa30.32■■■□□ 2.45
SCAMP3-208ENST00000490999 LAMC3Q9Y6N6 1575 aa30.29■■■□□ 2.44
SCAMP3-208ENST00000490999 MROH2BQ7Z745 1585 aa30.24■■■□□ 2.43
SCAMP3-208ENST00000490999 KIF21AQ7Z4S6 1674 aa30.24■■■□□ 2.43
SCAMP3-208ENST00000490999 PDS5BQ9NTI5 1447 aa30.12■■■□□ 2.41
SCAMP3-208ENST00000490999 TRIM41Q8WV44 630 aa30■■■□□ 2.39
SCAMP3-208ENST00000490999 MRC2Q9UBG0 1479 aa29.96■■■□□ 2.39
SCAMP3-208ENST00000490999 CADPSQ9ULU8 1353 aa29.96■■■□□ 2.39
SCAMP3-208ENST00000490999 WDR62O43379 1518 aa29.91■■■□□ 2.38
SCAMP3-208ENST00000490999 WIZO95785 1651 aa29.85■■■□□ 2.37
SCAMP3-208ENST00000490999 CEP164Q9UPV0 1460 aa29.75■■■□□ 2.35
SCAMP3-208ENST00000490999 FANCD2Q9BXW9 1451 aa29.68■■■□□ 2.34
SCAMP3-208ENST00000490999 CFTRP13569 1480 aa29.55■■■□□ 2.32
SCAMP3-208ENST00000490999 URB2Q14146 1524 aaKnown RBP29.5■■■□□ 2.31
SCAMP3-208ENST00000490999 OSCARQ8IYS5 282 aa29.43■■■□□ 2.3
SCAMP3-208ENST00000490999 TOP2AP11388 1531 aaKnown RBP29.43■■■□□ 2.3
SCAMP3-208ENST00000490999 RSF1Q96T23 1441 aaPredicted RBP29.42■■■□□ 2.3
SCAMP3-208ENST00000490999 ZNF608Q9ULD9 1512 aaPredicted RBP29.23■■■□□ 2.27
SCAMP3-208ENST00000490999 RIMBP3CA6NJZ7 1639 aa29.23■■■□□ 2.27
SCAMP3-208ENST00000490999 RIMBP3BA6NNM3 1639 aa29.23■■■□□ 2.27
SCAMP3-208ENST00000490999 RIMBP3Q9UFD9 1639 aa29.23■■■□□ 2.27
SCAMP3-208ENST00000490999 PRDM2Q13029 1718 aa29.18■■■□□ 2.26
SCAMP3-208ENST00000490999 IFT140Q96RY7 1462 aa29.14■■■□□ 2.26
SCAMP3-208ENST00000490999 ARHGEF11O15085 1522 aa29.1■■■□□ 2.25
SCAMP3-208ENST00000490999 CCDC88BA6NC98 1476 aa29.09■■■□□ 2.25
SCAMP3-208ENST00000490999 TOPBP1Q92547 1522 aa29.07■■■□□ 2.24
SCAMP3-208ENST00000490999 EIF4G3O43432 1585 aaKnown RBP29.05■■■□□ 2.24
SCAMP3-208ENST00000490999 DNMBPQ6XZF7 1577 aa28.92■■■□□ 2.22
SCAMP3-208ENST00000490999 AQRO60306 1485 aaKnown RBP eCLIP28.87■■■□□ 2.21
SCAMP3-208ENST00000490999 CHD1O14646 1710 aa28.87■■■□□ 2.21
SCAMP3-208ENST00000490999 CYB5RLQ6IPT4 315 aa28.86■■■□□ 2.21
SCAMP3-208ENST00000490999 ABCC8Q09428 1581 aa28.84■■■□□ 2.21
SCAMP3-208ENST00000490999 TARBP1Q13395 1621 aaKnown RBP28.83■■■□□ 2.21
SCAMP3-208ENST00000490999 ARAP1Q96P48 1450 aa28.8■■■□□ 2.2
SCAMP3-208ENST00000490999 FBLN2P98095 1184 aa28.76■■■□□ 2.19
SCAMP3-208ENST00000490999 POLA1P09884 1462 aaPredicted RBP28.76■■■□□ 2.19
SCAMP3-208ENST00000490999 TRHP20396 242 aaPredicted RBP28.69■■■□□ 2.18
SCAMP3-208ENST00000490999 RAD54L2Q9Y4B4 1467 aa28.69■■■□□ 2.18
SCAMP3-208ENST00000490999 TDRD9Q8NDG6 1382 aaKnown RBP28.62■■■□□ 2.17
SCAMP3-208ENST00000490999 SNAPC4Q5SXM2 1469 aa28.59■■■□□ 2.17
SCAMP3-208ENST00000490999 SOGA1O94964 1423 aa28.56■■■□□ 2.16
SCAMP3-208ENST00000490999 CLASP1Q7Z460 1538 aa28.53■■■□□ 2.16
SCAMP3-208ENST00000490999 FGD5Q6ZNL6 1462 aa28.53■■■□□ 2.16
SCAMP3-208ENST00000490999 CUX1P39880 1505 aa28.44■■■□□ 2.14
SCAMP3-208ENST00000490999 SYNJ1O43426 1573 aa28.44■■■□□ 2.14
SCAMP3-208ENST00000490999 WDR97A6NE52 1622 aa28.43■■■□□ 2.14
SCAMP3-208ENST00000490999 MAGI1Q96QZ7 1491 aaPredicted RBP28.41■■■□□ 2.14
SCAMP3-208ENST00000490999 CHMP7Q8WUX9 453 aaPredicted RBP28.41■■■□□ 2.14
SCAMP3-208ENST00000490999 GRIN2BQ13224 1484 aa28.38■■■□□ 2.13
SCAMP3-208ENST00000490999 SYNJ2O15056 1496 aa28.34■■■□□ 2.13
SCAMP3-208ENST00000490999 PBRM1Q86U86 1689 aa28.27■■■□□ 2.12
SCAMP3-208ENST00000490999 GAPVD1Q14C86 1478 aa28.24■■■□□ 2.11
SCAMP3-208ENST00000490999 ABCA5Q8WWZ7 1642 aa28.18■■■□□ 2.1
SCAMP3-208ENST00000490999 AEBP2Q6ZN18 517 aaPredicted RBP28.13■■■□□ 2.09
SCAMP3-208ENST00000490999 ABCA10Q8WWZ4 1543 aa28.13■■■□□ 2.09
SCAMP3-208ENST00000490999 ERCC6L2Q5T890 1561 aa28.12■■■□□ 2.09
SCAMP3-208ENST00000490999 GRIN2AQ12879 1464 aa28.05■■■□□ 2.08
SCAMP3-208ENST00000490999 ADAMTS12P58397 1594 aa28.03■■■□□ 2.08
SCAMP3-208ENST00000490999 CEP170Q5SW79 1584 aa28.01■■■□□ 2.07
SCAMP3-208ENST00000490999 NUP160Q12769 1436 aa27.94■■■□□ 2.06
SCAMP3-208ENST00000490999 WRNQ14191 1432 aaPredicted RBP eCLIP27.92■■■□□ 2.06
SCAMP3-208ENST00000490999 SHROOM2Q13796 1616 aa27.87■■■□□ 2.05
SCAMP3-208ENST00000490999 FHAD1B1AJZ9 1412 aa27.84■■■□□ 2.05
SCAMP3-208ENST00000490999 BIVM-ERCC5R4GMW8 1640 aa27.82■■■□□ 2.04
SCAMP3-208ENST00000490999 SUPT5HO00267 1087 aaKnown RBP27.82■■■□□ 2.04
SCAMP3-208ENST00000490999 TOP2BQ02880 1626 aa27.81■■■□□ 2.04
SCAMP3-208ENST00000490999 ERICH3Q5RHP9 1530 aa27.74■■■□□ 2.03
SCAMP3-208ENST00000490999 PRG4Q92954 1404 aaPredicted RBP27.73■■■□□ 2.03
SCAMP3-208ENST00000490999 KIF13AQ9H1H9 1805 aa27.72■■■□□ 2.03
SCAMP3-208ENST00000490999 RUSC2Q8N2Y8 1516 aa27.65■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms