RNA–Protein interactions for RNA: ENST00000490999.5

SCAMP3-208, Transcript of secretory carrier membrane protein 3, human

TSL 2

Gene SCAMP3, Length 1,011 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCAMP3-208	ENST00000490999	NISCH	Q9Y2I1	1504 aa		39.18	■■■■□ 3.86
SCAMP3-208	ENST00000490999	ABCC9	O60706	1549 aa		35.87	■■■■□ 3.33
SCAMP3-208	ENST00000490999	CCDC180	Q9P1Z9	1646 aa		35.31	■■■■□ 3.24
SCAMP3-208	ENST00000490999	DNAJC5B	Q9UF47	199 aa		33.98	■■■■□ 3.03
SCAMP3-208	ENST00000490999	RB1CC1	Q8TDY2	1594 aa		33.84	■■■■□ 3.01
SCAMP3-208	ENST00000490999	NACAD	O15069	1562 aa		33.47	■■■□□ 2.95
SCAMP3-208	ENST00000490999	PABPN1	Q86U42	306 aa	Known RBP eCLIP	33.3	■■■□□ 2.92
SCAMP3-208	ENST00000490999	DCAF8L2	P0C7V8	631 aa		33.27	■■■□□ 2.92
SCAMP3-208	ENST00000490999	UNC13A	Q9UPW8	1703 aa		33.08	■■■□□ 2.89
SCAMP3-208	ENST00000490999	BICRA	Q9NZM4	1560 aa		32.92	■■■□□ 2.86
SCAMP3-208	ENST00000490999	MYO15B	Q96JP2	1530 aa		32.81	■■■□□ 2.84
SCAMP3-208	ENST00000490999	ZCCHC6	Q5VYS8	1495 aa	Known RBP	32.42	■■■□□ 2.78
SCAMP3-208	ENST00000490999	SHROOM4	Q9ULL8	1493 aa		32.33	■■■□□ 2.77
SCAMP3-208	ENST00000490999	CC2D2A	Q9P2K1	1620 aa		32.33	■■■□□ 2.77
SCAMP3-208	ENST00000490999	CECR2	Q9BXF3	1484 aa		32.31	■■■□□ 2.76
SCAMP3-208	ENST00000490999	SCRIB	Q14160	1630 aa		32.29	■■■□□ 2.76
SCAMP3-208	ENST00000490999	DCAF1	Q9Y4B6	1507 aa		32.26	■■■□□ 2.75
SCAMP3-208	ENST00000490999	EIF4G1	Q04637	1599 aa	Known RBP	32.15	■■■□□ 2.74
SCAMP3-208	ENST00000490999	DNAJC5	Q9H3Z4	198 aa		31.42	■■■□□ 2.62
SCAMP3-208	ENST00000490999	CUX2	O14529	1486 aa		30.99	■■■□□ 2.55
SCAMP3-208	ENST00000490999	ERCC6	Q03468	1493 aa		30.97	■■■□□ 2.55
SCAMP3-208	ENST00000490999	NCAPD3	P42695	1498 aa		30.9	■■■□□ 2.54
SCAMP3-208	ENST00000490999	ATAD2B	Q9ULI0	1458 aa		30.81	■■■□□ 2.52
SCAMP3-208	ENST00000490999	NES	P48681	1621 aa		30.69	■■■□□ 2.5
SCAMP3-208	ENST00000490999	SMARCA4	P51532	1647 aa		30.69	■■■□□ 2.5
SCAMP3-208	ENST00000490999	HMGXB3	Q12766	1538 aa		30.68	■■■□□ 2.5
SCAMP3-208	ENST00000490999	SMARCA2	P51531	1590 aa		30.66	■■■□□ 2.5
SCAMP3-208	ENST00000490999	BAZ1B	Q9UIG0	1483 aa	Known RBP	30.5	■■■□□ 2.47
SCAMP3-208	ENST00000490999	THOC2	Q8NI27	1593 aa	Known RBP	30.45	■■■□□ 2.47
SCAMP3-208	ENST00000490999	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	30.43	■■■□□ 2.46
SCAMP3-208	ENST00000490999	PEG3	Q9GZU2	1588 aa		30.32	■■■□□ 2.45
SCAMP3-208	ENST00000490999	LAMC3	Q9Y6N6	1575 aa		30.29	■■■□□ 2.44
SCAMP3-208	ENST00000490999	MROH2B	Q7Z745	1585 aa		30.24	■■■□□ 2.43
SCAMP3-208	ENST00000490999	KIF21A	Q7Z4S6	1674 aa		30.24	■■■□□ 2.43
SCAMP3-208	ENST00000490999	PDS5B	Q9NTI5	1447 aa		30.12	■■■□□ 2.41
SCAMP3-208	ENST00000490999	TRIM41	Q8WV44	630 aa		30	■■■□□ 2.39
SCAMP3-208	ENST00000490999	MRC2	Q9UBG0	1479 aa		29.96	■■■□□ 2.39
SCAMP3-208	ENST00000490999	CADPS	Q9ULU8	1353 aa		29.96	■■■□□ 2.39
SCAMP3-208	ENST00000490999	WDR62	O43379	1518 aa		29.91	■■■□□ 2.38
SCAMP3-208	ENST00000490999	WIZ	O95785	1651 aa		29.85	■■■□□ 2.37
SCAMP3-208	ENST00000490999	CEP164	Q9UPV0	1460 aa		29.75	■■■□□ 2.35
SCAMP3-208	ENST00000490999	FANCD2	Q9BXW9	1451 aa		29.68	■■■□□ 2.34
SCAMP3-208	ENST00000490999	CFTR	P13569	1480 aa		29.55	■■■□□ 2.32
SCAMP3-208	ENST00000490999	URB2	Q14146	1524 aa	Known RBP	29.5	■■■□□ 2.31
SCAMP3-208	ENST00000490999	OSCAR	Q8IYS5	282 aa		29.43	■■■□□ 2.3
SCAMP3-208	ENST00000490999	TOP2A	P11388	1531 aa	Known RBP	29.43	■■■□□ 2.3
SCAMP3-208	ENST00000490999	RSF1	Q96T23	1441 aa	Predicted RBP	29.42	■■■□□ 2.3
SCAMP3-208	ENST00000490999	ZNF608	Q9ULD9	1512 aa	Predicted RBP	29.23	■■■□□ 2.27
SCAMP3-208	ENST00000490999	RIMBP3C	A6NJZ7	1639 aa		29.23	■■■□□ 2.27
SCAMP3-208	ENST00000490999	RIMBP3B	A6NNM3	1639 aa		29.23	■■■□□ 2.27
SCAMP3-208	ENST00000490999	RIMBP3	Q9UFD9	1639 aa		29.23	■■■□□ 2.27
SCAMP3-208	ENST00000490999	PRDM2	Q13029	1718 aa		29.18	■■■□□ 2.26
SCAMP3-208	ENST00000490999	IFT140	Q96RY7	1462 aa		29.14	■■■□□ 2.26
SCAMP3-208	ENST00000490999	ARHGEF11	O15085	1522 aa		29.1	■■■□□ 2.25
SCAMP3-208	ENST00000490999	CCDC88B	A6NC98	1476 aa		29.09	■■■□□ 2.25
SCAMP3-208	ENST00000490999	TOPBP1	Q92547	1522 aa		29.07	■■■□□ 2.24
SCAMP3-208	ENST00000490999	EIF4G3	O43432	1585 aa	Known RBP	29.05	■■■□□ 2.24
SCAMP3-208	ENST00000490999	DNMBP	Q6XZF7	1577 aa		28.92	■■■□□ 2.22
SCAMP3-208	ENST00000490999	AQR	O60306	1485 aa	Known RBP eCLIP	28.87	■■■□□ 2.21
SCAMP3-208	ENST00000490999	CHD1	O14646	1710 aa		28.87	■■■□□ 2.21
SCAMP3-208	ENST00000490999	CYB5RL	Q6IPT4	315 aa		28.86	■■■□□ 2.21
SCAMP3-208	ENST00000490999	ABCC8	Q09428	1581 aa		28.84	■■■□□ 2.21
SCAMP3-208	ENST00000490999	TARBP1	Q13395	1621 aa	Known RBP	28.83	■■■□□ 2.21
SCAMP3-208	ENST00000490999	ARAP1	Q96P48	1450 aa		28.8	■■■□□ 2.2
SCAMP3-208	ENST00000490999	FBLN2	P98095	1184 aa		28.76	■■■□□ 2.19
SCAMP3-208	ENST00000490999	POLA1	P09884	1462 aa	Predicted RBP	28.76	■■■□□ 2.19
SCAMP3-208	ENST00000490999	TRH	P20396	242 aa	Predicted RBP	28.69	■■■□□ 2.18
SCAMP3-208	ENST00000490999	RAD54L2	Q9Y4B4	1467 aa		28.69	■■■□□ 2.18
SCAMP3-208	ENST00000490999	TDRD9	Q8NDG6	1382 aa	Known RBP	28.62	■■■□□ 2.17
SCAMP3-208	ENST00000490999	SNAPC4	Q5SXM2	1469 aa		28.59	■■■□□ 2.17
SCAMP3-208	ENST00000490999	SOGA1	O94964	1423 aa		28.56	■■■□□ 2.16
SCAMP3-208	ENST00000490999	CLASP1	Q7Z460	1538 aa		28.53	■■■□□ 2.16
SCAMP3-208	ENST00000490999	FGD5	Q6ZNL6	1462 aa		28.53	■■■□□ 2.16
SCAMP3-208	ENST00000490999	CUX1	P39880	1505 aa		28.44	■■■□□ 2.14
SCAMP3-208	ENST00000490999	SYNJ1	O43426	1573 aa		28.44	■■■□□ 2.14
SCAMP3-208	ENST00000490999	WDR97	A6NE52	1622 aa		28.43	■■■□□ 2.14
SCAMP3-208	ENST00000490999	MAGI1	Q96QZ7	1491 aa	Predicted RBP	28.41	■■■□□ 2.14
SCAMP3-208	ENST00000490999	CHMP7	Q8WUX9	453 aa	Predicted RBP	28.41	■■■□□ 2.14
SCAMP3-208	ENST00000490999	GRIN2B	Q13224	1484 aa		28.38	■■■□□ 2.13
SCAMP3-208	ENST00000490999	SYNJ2	O15056	1496 aa		28.34	■■■□□ 2.13
SCAMP3-208	ENST00000490999	PBRM1	Q86U86	1689 aa		28.27	■■■□□ 2.12
SCAMP3-208	ENST00000490999	GAPVD1	Q14C86	1478 aa		28.24	■■■□□ 2.11
SCAMP3-208	ENST00000490999	ABCA5	Q8WWZ7	1642 aa		28.18	■■■□□ 2.1
SCAMP3-208	ENST00000490999	AEBP2	Q6ZN18	517 aa	Predicted RBP	28.13	■■■□□ 2.09
SCAMP3-208	ENST00000490999	ABCA10	Q8WWZ4	1543 aa		28.13	■■■□□ 2.09
SCAMP3-208	ENST00000490999	ERCC6L2	Q5T890	1561 aa		28.12	■■■□□ 2.09
SCAMP3-208	ENST00000490999	GRIN2A	Q12879	1464 aa		28.05	■■■□□ 2.08
SCAMP3-208	ENST00000490999	ADAMTS12	P58397	1594 aa		28.03	■■■□□ 2.08
SCAMP3-208	ENST00000490999	CEP170	Q5SW79	1584 aa		28.01	■■■□□ 2.07
SCAMP3-208	ENST00000490999	NUP160	Q12769	1436 aa		27.94	■■■□□ 2.06
SCAMP3-208	ENST00000490999	WRN	Q14191	1432 aa	Predicted RBP eCLIP	27.92	■■■□□ 2.06
SCAMP3-208	ENST00000490999	SHROOM2	Q13796	1616 aa		27.87	■■■□□ 2.05
SCAMP3-208	ENST00000490999	FHAD1	B1AJZ9	1412 aa		27.84	■■■□□ 2.05
SCAMP3-208	ENST00000490999	BIVM-ERCC5	R4GMW8	1640 aa		27.82	■■■□□ 2.04
SCAMP3-208	ENST00000490999	SUPT5H	O00267	1087 aa	Known RBP	27.82	■■■□□ 2.04
SCAMP3-208	ENST00000490999	TOP2B	Q02880	1626 aa		27.81	■■■□□ 2.04
SCAMP3-208	ENST00000490999	ERICH3	Q5RHP9	1530 aa		27.74	■■■□□ 2.03
SCAMP3-208	ENST00000490999	PRG4	Q92954	1404 aa	Predicted RBP	27.73	■■■□□ 2.03
SCAMP3-208	ENST00000490999	KIF13A	Q9H1H9	1805 aa		27.72	■■■□□ 2.03
SCAMP3-208	ENST00000490999	RUSC2	Q8N2Y8	1516 aa		27.65	■■■□□ 2.02

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