Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
BLOC1S4Q9NUP1 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
BLOC1S4Q9NUP1 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
BLOC1S4Q9NUP1 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC31.19■■■□□ 2.58
BLOC1S4Q9NUP1 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC31.16■■■□□ 2.58
BLOC1S4Q9NUP1 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC31.16■■■□□ 2.58
BLOC1S4Q9NUP1 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC31.16■■■□□ 2.58
BLOC1S4Q9NUP1 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC31.16■■■□□ 2.58
BLOC1S4Q9NUP1 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC31.13■■■□□ 2.57
BLOC1S4Q9NUP1 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
BLOC1S4Q9NUP1 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC31.09■■■□□ 2.57
BLOC1S4Q9NUP1 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC31.09■■■□□ 2.57
BLOC1S4Q9NUP1 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC31.07■■■□□ 2.56
BLOC1S4Q9NUP1 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC31.07■■■□□ 2.56
BLOC1S4Q9NUP1 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC31.07■■■□□ 2.56
BLOC1S4Q9NUP1 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC31.05■■■□□ 2.56
BLOC1S4Q9NUP1 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
BLOC1S4Q9NUP1 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC31.04■■■□□ 2.56
BLOC1S4Q9NUP1 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
BLOC1S4Q9NUP1 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC31.03■■■□□ 2.56
BLOC1S4Q9NUP1 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC31.03■■■□□ 2.56
BLOC1S4Q9NUP1 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
BLOC1S4Q9NUP1 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
BLOC1S4Q9NUP1 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC30.98■■■□□ 2.55
BLOC1S4Q9NUP1 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
BLOC1S4Q9NUP1 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC30.96■■■□□ 2.55
BLOC1S4Q9NUP1 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
BLOC1S4Q9NUP1 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
BLOC1S4Q9NUP1 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC30.95■■■□□ 2.55
BLOC1S4Q9NUP1 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC30.94■■■□□ 2.54
BLOC1S4Q9NUP1 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
BLOC1S4Q9NUP1 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC30.92■■■□□ 2.54
BLOC1S4Q9NUP1 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC30.9■■■□□ 2.54
BLOC1S4Q9NUP1 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
BLOC1S4Q9NUP1 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC30.89■■■□□ 2.54
BLOC1S4Q9NUP1 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
BLOC1S4Q9NUP1 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
BLOC1S4Q9NUP1 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC30.88■■■□□ 2.53
BLOC1S4Q9NUP1 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
BLOC1S4Q9NUP1 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC30.87■■■□□ 2.53
BLOC1S4Q9NUP1 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC30.87■■■□□ 2.53
BLOC1S4Q9NUP1 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
BLOC1S4Q9NUP1 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
BLOC1S4Q9NUP1 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC30.85■■■□□ 2.53
BLOC1S4Q9NUP1 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
BLOC1S4Q9NUP1 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
BLOC1S4Q9NUP1 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
BLOC1S4Q9NUP1 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC30.83■■■□□ 2.53
BLOC1S4Q9NUP1 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC30.83■■■□□ 2.53
BLOC1S4Q9NUP1 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC30.83■■■□□ 2.53
BLOC1S4Q9NUP1 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC30.82■■■□□ 2.52
BLOC1S4Q9NUP1 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC30.81■■■□□ 2.52
BLOC1S4Q9NUP1 AC120057.4-201ENST00000624722 1615 ntBASIC30.81■■■□□ 2.52
BLOC1S4Q9NUP1 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC30.81■■■□□ 2.52
BLOC1S4Q9NUP1 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
BLOC1S4Q9NUP1 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
BLOC1S4Q9NUP1 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC30.8■■■□□ 2.52
BLOC1S4Q9NUP1 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
BLOC1S4Q9NUP1 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC30.78■■■□□ 2.52
BLOC1S4Q9NUP1 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC30.76■■■□□ 2.52
BLOC1S4Q9NUP1 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC30.76■■■□□ 2.51
BLOC1S4Q9NUP1 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
BLOC1S4Q9NUP1 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
BLOC1S4Q9NUP1 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
BLOC1S4Q9NUP1 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
BLOC1S4Q9NUP1 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
BLOC1S4Q9NUP1 KLF16-203ENST00000592313 508 ntTSL 3 BASIC30.69■■■□□ 2.5
BLOC1S4Q9NUP1 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
BLOC1S4Q9NUP1 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC30.66■■■□□ 2.5
BLOC1S4Q9NUP1 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
BLOC1S4Q9NUP1 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
BLOC1S4Q9NUP1 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC30.65■■■□□ 2.5
BLOC1S4Q9NUP1 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
BLOC1S4Q9NUP1 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
BLOC1S4Q9NUP1 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
BLOC1S4Q9NUP1 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC30.62■■■□□ 2.49
BLOC1S4Q9NUP1 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC30.62■■■□□ 2.49
BLOC1S4Q9NUP1 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
BLOC1S4Q9NUP1 ST7-205ENST00000393446 2114 ntTSL 5 BASIC30.62■■■□□ 2.49
BLOC1S4Q9NUP1 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC30.61■■■□□ 2.49
BLOC1S4Q9NUP1 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
BLOC1S4Q9NUP1 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC30.6■■■□□ 2.49
BLOC1S4Q9NUP1 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
BLOC1S4Q9NUP1 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC30.56■■■□□ 2.48
BLOC1S4Q9NUP1 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC30.56■■■□□ 2.48
BLOC1S4Q9NUP1 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
BLOC1S4Q9NUP1 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC30.53■■■□□ 2.48
BLOC1S4Q9NUP1 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
BLOC1S4Q9NUP1 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
BLOC1S4Q9NUP1 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC30.51■■■□□ 2.47
BLOC1S4Q9NUP1 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
BLOC1S4Q9NUP1 AL133380.1-201ENST00000506013 324 ntBASIC30.5■■■□□ 2.47
BLOC1S4Q9NUP1 RARRES2P7-201ENST00000567349 469 ntBASIC30.49■■■□□ 2.47
BLOC1S4Q9NUP1 ST7-202ENST00000323984 2142 ntTSL 5 BASIC30.48■■■□□ 2.47
BLOC1S4Q9NUP1 ST7-207ENST00000393449 2127 ntTSL 5 BASIC30.48■■■□□ 2.47
BLOC1S4Q9NUP1 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC30.48■■■□□ 2.47
BLOC1S4Q9NUP1 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC30.47■■■□□ 2.47
BLOC1S4Q9NUP1 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
BLOC1S4Q9NUP1 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC30.46■■■□□ 2.47
BLOC1S4Q9NUP1 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC30.46■■■□□ 2.47
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms