Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC38.13■■■■□ 3.69
BLOC1S4Q9NUP1 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC37.81■■■■□ 3.64
BLOC1S4Q9NUP1 AL356512.1-201ENST00000607453 1739 ntBASIC37.26■■■■□ 3.56
BLOC1S4Q9NUP1 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC37.16■■■■□ 3.54
BLOC1S4Q9NUP1 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC36.9■■■■□ 3.5
BLOC1S4Q9NUP1 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC36.85■■■■□ 3.49
BLOC1S4Q9NUP1 HES6-203ENST00000409160 1600 ntTSL 2 BASIC36.81■■■■□ 3.48
BLOC1S4Q9NUP1 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC36.54■■■■□ 3.44
BLOC1S4Q9NUP1 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC36.5■■■■□ 3.43
BLOC1S4Q9NUP1 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC36.32■■■■□ 3.4
BLOC1S4Q9NUP1 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC36.2■■■■□ 3.39
BLOC1S4Q9NUP1 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC36.13■■■■□ 3.37
BLOC1S4Q9NUP1 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC35.72■■■■□ 3.31
BLOC1S4Q9NUP1 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC35.62■■■■□ 3.29
BLOC1S4Q9NUP1 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC35.57■■■■□ 3.28
BLOC1S4Q9NUP1 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC35.38■■■■□ 3.26
BLOC1S4Q9NUP1 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC35.25■■■■□ 3.23
BLOC1S4Q9NUP1 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC35.16■■■■□ 3.22
BLOC1S4Q9NUP1 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC35.06■■■■□ 3.2
BLOC1S4Q9NUP1 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC35.02■■■■□ 3.2
BLOC1S4Q9NUP1 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC35■■■■□ 3.19
BLOC1S4Q9NUP1 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC34.97■■■■□ 3.19
BLOC1S4Q9NUP1 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC34.96■■■■□ 3.19
BLOC1S4Q9NUP1 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC34.9■■■■□ 3.18
BLOC1S4Q9NUP1 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC34.76■■■■□ 3.15
BLOC1S4Q9NUP1 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC34.73■■■■□ 3.15
BLOC1S4Q9NUP1 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC34.71■■■■□ 3.15
BLOC1S4Q9NUP1 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC34.7■■■■□ 3.14
BLOC1S4Q9NUP1 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC34.61■■■■□ 3.13
BLOC1S4Q9NUP1 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
BLOC1S4Q9NUP1 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC34.39■■■■□ 3.1
BLOC1S4Q9NUP1 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC34.3■■■■□ 3.08
BLOC1S4Q9NUP1 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC34.25■■■■□ 3.07
BLOC1S4Q9NUP1 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC34.18■■■■□ 3.06
BLOC1S4Q9NUP1 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC34.15■■■■□ 3.06
BLOC1S4Q9NUP1 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC34.13■■■■□ 3.05
BLOC1S4Q9NUP1 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC34.09■■■■□ 3.05
BLOC1S4Q9NUP1 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC34.09■■■■□ 3.05
BLOC1S4Q9NUP1 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC33.92■■■■□ 3.02
BLOC1S4Q9NUP1 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC33.9■■■■□ 3.02
BLOC1S4Q9NUP1 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC33.84■■■■□ 3.01
BLOC1S4Q9NUP1 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC33.84■■■■□ 3.01
BLOC1S4Q9NUP1 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC33.83■■■■□ 3.01
BLOC1S4Q9NUP1 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC33.83■■■■□ 3.01
BLOC1S4Q9NUP1 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC33.78■■■■□ 3
BLOC1S4Q9NUP1 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC33.74■■■□□ 2.99
BLOC1S4Q9NUP1 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC33.7■■■□□ 2.99
BLOC1S4Q9NUP1 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC33.7■■■□□ 2.98
BLOC1S4Q9NUP1 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC33.7■■■□□ 2.98
BLOC1S4Q9NUP1 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC33.68■■■□□ 2.98
BLOC1S4Q9NUP1 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC33.66■■■□□ 2.98
BLOC1S4Q9NUP1 INO80B-203ENST00000409917 796 ntTSL 2 BASIC33.64■■■□□ 2.98
BLOC1S4Q9NUP1 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC33.62■■■□□ 2.97
BLOC1S4Q9NUP1 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC33.45■■■□□ 2.95
BLOC1S4Q9NUP1 ILK-212ENST00000532063 1617 ntTSL 2 BASIC33.35■■■□□ 2.93
BLOC1S4Q9NUP1 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
BLOC1S4Q9NUP1 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC33.34■■■□□ 2.93
BLOC1S4Q9NUP1 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC33.31■■■□□ 2.92
BLOC1S4Q9NUP1 AC015813.7-201ENST00000623294 581 ntBASIC33.3■■■□□ 2.92
BLOC1S4Q9NUP1 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC33.29■■■□□ 2.92
BLOC1S4Q9NUP1 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC33.29■■■□□ 2.92
BLOC1S4Q9NUP1 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC33.25■■■□□ 2.91
BLOC1S4Q9NUP1 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC33.22■■■□□ 2.91
BLOC1S4Q9NUP1 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC33.21■■■□□ 2.91
BLOC1S4Q9NUP1 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC33.16■■■□□ 2.9
BLOC1S4Q9NUP1 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC33.1■■■□□ 2.89
BLOC1S4Q9NUP1 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
BLOC1S4Q9NUP1 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
BLOC1S4Q9NUP1 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC33.02■■■□□ 2.88
BLOC1S4Q9NUP1 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC33.02■■■□□ 2.88
BLOC1S4Q9NUP1 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC33■■■□□ 2.87
BLOC1S4Q9NUP1 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
BLOC1S4Q9NUP1 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC32.97■■■□□ 2.87
BLOC1S4Q9NUP1 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC32.85■■■□□ 2.85
BLOC1S4Q9NUP1 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC32.83■■■□□ 2.85
BLOC1S4Q9NUP1 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
BLOC1S4Q9NUP1 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
BLOC1S4Q9NUP1 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC32.8■■■□□ 2.84
BLOC1S4Q9NUP1 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC32.79■■■□□ 2.84
BLOC1S4Q9NUP1 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC32.77■■■□□ 2.84
BLOC1S4Q9NUP1 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
BLOC1S4Q9NUP1 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC32.7■■■□□ 2.83
BLOC1S4Q9NUP1 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC32.68■■■□□ 2.82
BLOC1S4Q9NUP1 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC32.65■■■□□ 2.82
BLOC1S4Q9NUP1 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
BLOC1S4Q9NUP1 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
BLOC1S4Q9NUP1 AC006077.2-201ENST00000623591 457 ntBASIC32.58■■■□□ 2.81
BLOC1S4Q9NUP1 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
BLOC1S4Q9NUP1 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
BLOC1S4Q9NUP1 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC32.56■■■□□ 2.8
BLOC1S4Q9NUP1 AC145285.7-201ENST00000614819 1539 ntBASIC32.52■■■□□ 2.8
BLOC1S4Q9NUP1 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
BLOC1S4Q9NUP1 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC32.43■■■□□ 2.78
BLOC1S4Q9NUP1 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
BLOC1S4Q9NUP1 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC32.4■■■□□ 2.78
BLOC1S4Q9NUP1 ZNRF2P1-201ENST00000441407 443 ntBASIC32.4■■■□□ 2.78
BLOC1S4Q9NUP1 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC32.38■■■□□ 2.77
BLOC1S4Q9NUP1 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC32.38■■■□□ 2.77
BLOC1S4Q9NUP1 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC32.29■■■□□ 2.76
BLOC1S4Q9NUP1 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms