Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 CAD-202ENST00000403525 6900 ntTSL 1 (best) BASIC13.83□□□□□ -0.23e-7■□□□□ 9.4
YBX3P16989 CAD-201ENST00000264705 7265 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.383e-7■□□□□ 9.4
YBX3P16989 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.673e-7■□□□□ 9.4
YBX3P16989 PRMT1-213ENST00000529650 479 ntTSL 230.39■■■□□ 2.461e-10■□□□□ 9.4
YBX3P16989 AC091060.1-201ENST00000623524 1766 ntBASIC28.06■■■□□ 2.083e-7■□□□□ 9.4
YBX3P16989 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC27.6■■■□□ 2.013e-7■□□□□ 9.4
YBX3P16989 RFNG-204ENST00000578676 1078 ntTSL 327.41■■□□□ 1.983e-7■□□□□ 9.4
YBX3P16989 SLC38A1-208ENST00000550173 891 ntTSL 527.03■■□□□ 1.923e-7■□□□□ 9.4
YBX3P16989 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC26.96■■□□□ 1.913e-7■□□□□ 9.4
YBX3P16989 MLST8-208ENST00000562392 1662 ntTSL 226.77■■□□□ 1.881e-10■□□□□ 9.4
YBX3P16989 SCAMP2-206ENST00000565345 790 ntTSL 525.36■■□□□ 1.653e-7■□□□□ 9.4
YBX3P16989 SLC38A1-209ENST00000551506 586 ntTSL 324.05■■□□□ 1.443e-7■□□□□ 9.4
YBX3P16989 G6PC3-204ENST00000588558 1718 ntTSL 1 (best)23.01■■□□□ 1.273e-7■□□□□ 9.4
YBX3P16989 RFNG-203ENST00000578356 649 ntTSL 522.59■■□□□ 1.213e-7■□□□□ 9.4
YBX3P16989 RFNG-207ENST00000580953 2082 ntTSL 521.69■■□□□ 1.063e-7■□□□□ 9.4
YBX3P16989 SCAMP2-208ENST00000566557 585 ntTSL 221.36■■□□□ 1.013e-7■□□□□ 9.4
YBX3P16989 G6PC3-207ENST00000591696 805 ntTSL 321.29■■□□□ 13e-7■□□□□ 9.4
YBX3P16989 SCAMP2-210ENST00000569124 538 ntTSL 421.25■□□□□ 0.993e-7■□□□□ 9.4
YBX3P16989 G6PC3-202ENST00000585361 1572 ntTSL 221.06■□□□□ 0.963e-7■□□□□ 9.4
YBX3P16989 G6PC3-205ENST00000590253 844 ntTSL 520.72■□□□□ 0.913e-7■□□□□ 9.4
YBX3P16989 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.56■□□□□ 0.883e-7■□□□□ 9.4
YBX3P16989 SCAMP2-205ENST00000564529 866 ntTSL 220.41■□□□□ 0.863e-7■□□□□ 9.4
YBX3P16989 TRPM4-204ENST00000595071 2947 ntTSL 220.31■□□□□ 0.843e-7■□□□□ 9.4
YBX3P16989 RFNG-211ENST00000584515 994 ntTSL 220.26■□□□□ 0.833e-7■□□□□ 9.4
YBX3P16989 CAD-208ENST00000479002 614 ntTSL 520.1■□□□□ 0.813e-7■□□□□ 9.4
YBX3P16989 SCAMP2-203ENST00000563663 1787 ntTSL 518.81■□□□□ 0.63e-7■□□□□ 9.4
YBX3P16989 C18orf21-203ENST00000587719 581 ntTSL 418.58■□□□□ 0.563e-7■□□□□ 9.4
YBX3P16989 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.383e-7■□□□□ 9.4
YBX3P16989 PPP1R7-212ENST00000439916 583 ntTSL 317.4■□□□□ 0.383e-7■□□□□ 9.4
YBX3P16989 C18orf21-206ENST00000593210 185 ntTSL 317.38■□□□□ 0.373e-7■□□□□ 9.4
YBX3P16989 RFNG-210ENST00000584463 424 ntTSL 317.09■□□□□ 0.333e-7■□□□□ 9.4
YBX3P16989 RFNG-202ENST00000429557 994 ntTSL 5 BASIC17.06■□□□□ 0.323e-7■□□□□ 9.4
YBX3P16989 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.313e-7■□□□□ 9.4
YBX3P16989 SCAMP2-212ENST00000569904 858 ntTSL 516.85■□□□□ 0.293e-7■□□□□ 9.4
YBX3P16989 IGF2BP2-208ENST00000466476 469 ntTSL 216.77■□□□□ 0.283e-7■□□□□ 9.4
YBX3P16989 PPP2R5D-204ENST00000467447 588 ntTSL 316.55■□□□□ 0.243e-7■□□□□ 9.4
YBX3P16989 SCAMP2-202ENST00000562363 638 ntTSL 516.22■□□□□ 0.193e-7■□□□□ 9.4
YBX3P16989 RFNG-208ENST00000582478 3107 ntTSL 1 (best)16.1■□□□□ 0.173e-7■□□□□ 9.4
YBX3P16989 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.08■□□□□ 0.173e-7■□□□□ 9.4
YBX3P16989 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15.79■□□□□ 0.123e-7■□□□□ 9.4
YBX3P16989 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.113e-7■□□□□ 9.4
YBX3P16989 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.13e-7■□□□□ 9.4
YBX3P16989 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.093e-7■□□□□ 9.4
YBX3P16989 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.043e-7■□□□□ 9.4
YBX3P16989 MLST8-206ENST00000562239 597 ntTSL 214.67□□□□□ -0.061e-10■□□□□ 9.4
YBX3P16989 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.063e-7■□□□□ 9.4
YBX3P16989 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.083e-7■□□□□ 9.4
YBX3P16989 MARK3-226ENST00000561314 724 ntTSL 313.84□□□□□ -0.193e-7■□□□□ 9.4
YBX3P16989 SCAMP2-207ENST00000566480 2476 ntTSL 513.7□□□□□ -0.223e-7■□□□□ 9.4
YBX3P16989 PLAGL1-209ENST00000444202 3197 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.373e-7■□□□□ 9.4
YBX3P16989 PXN-222ENST00000637624 4132 ntTSL 212.53□□□□□ -0.45e-6■□□□□ 9.4
YBX3P16989 SCAMP2-204ENST00000563829 3162 ntTSL 212.47□□□□□ -0.413e-7■□□□□ 9.4
YBX3P16989 MARK3-201ENST00000216288 2911 ntTSL 1 (best) BASIC12.46□□□□□ -0.423e-7■□□□□ 9.4
YBX3P16989 MARK3-211ENST00000556744 1051 ntTSL 1 (best)12.42□□□□□ -0.423e-7■□□□□ 9.4
YBX3P16989 MARK3-218ENST00000559274 1053 ntTSL 212.14□□□□□ -0.473e-7■□□□□ 9.4
YBX3P16989 PLAGL1-203ENST00000367571 2800 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.513e-7■□□□□ 9.4
YBX3P16989 G6PC3-206ENST00000590639 851 ntTSL 511.84□□□□□ -0.513e-7■□□□□ 9.4
YBX3P16989 MARK3-208ENST00000554627 1571 ntTSL 211.64□□□□□ -0.553e-7■□□□□ 9.4
YBX3P16989 PLAGL1-204ENST00000367572 2496 ntTSL 1 (best) BASIC11.6□□□□□ -0.553e-7■□□□□ 9.4
YBX3P16989 MARK3-207ENST00000553942 2298 ntTSL 1 (best) BASIC10.95□□□□□ -0.663e-7■□□□□ 9.4
YBX3P16989 MARK3-203ENST00000335102 2331 ntTSL 5 BASIC10.32□□□□□ -0.763e-7■□□□□ 9.4
YBX3P16989 MARK3-223ENST00000561071 746 ntTSL 39.53□□□□□ -0.883e-7■□□□□ 9.4
YBX3P16989 PLAGL1-205ENST00000392307 6296 ntTSL 2 BASIC8.71□□□□□ -1.013e-7■□□□□ 9.4
YBX3P16989 PLAGL1-202ENST00000360537 4430 ntAPPRIS P1 TSL 5 BASIC8.23□□□□□ -1.093e-7■□□□□ 9.4
YBX3P16989 VPS13D-211ENST00000543710 5676 ntTSL 1 (best)7.9□□□□□ -1.143e-7■□□□□ 9.4
YBX3P16989 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.572e-68■□□□□ 9.4
YBX3P16989 RPS10-203ENST00000464218 615 ntTSL 515.98■□□□□ 0.152e-68■□□□□ 9.4
YBX3P16989 RPS10-206ENST00000494077 781 ntTSL 215.56■□□□□ 0.082e-68■□□□□ 9.4
YBX3P16989 RPS10-204ENST00000467531 777 ntTSL 213.86□□□□□ -0.192e-68■□□□□ 9.4
YBX3P16989 RPS10-201ENST00000326199 644 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.22e-68■□□□□ 9.4
YBX3P16989 RPS10-202ENST00000344700 650 ntTSL 3 BASIC13.78□□□□□ -0.22e-68■□□□□ 9.4
YBX3P16989 RPS10-205ENST00000480942 734 ntTSL 213.42□□□□□ -0.262e-68■□□□□ 9.4
YBX3P16989 RPS10-NUDT3-201ENST00000605528 595 ntTSL 510.23□□□□□ -0.772e-68■□□□□ 9.4
YBX3P16989 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC22.65■■□□□ 1.228e-24■□□□□ 9.4
YBX3P16989 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.178e-24■□□□□ 9.4
YBX3P16989 ATP5H-204ENST00000580649 2191 ntTSL 210.62□□□□□ -0.713e-8■□□□□ 9.4
YBX3P16989 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC21.41■■□□□ 1.022e-9■□□□□ 9.4
YBX3P16989 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.63■□□□□ 0.892e-9■□□□□ 9.4
YBX3P16989 CCT5-203ENST00000503026 1933 ntTSL 2 BASIC14.35□□□□□ -0.112e-9■□□□□ 9.4
YBX3P16989 CCT5-213ENST00000515390 1728 ntTSL 2 BASIC10.71□□□□□ -0.692e-9■□□□□ 9.4
YBX3P16989 CCT5-201ENST00000280326 3675 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.932e-9■□□□□ 9.4
YBX3P16989 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.411e-6■□□□□ 9.4
YBX3P16989 MDH1-214ENST00000495083 552 ntTSL 28.7□□□□□ -1.025e-16■□□□□ 9.4
YBX3P16989 SEC22C-212ENST00000454141 780 ntTSL 324.78■■□□□ 1.569e-8■□□□□ 9.4
YBX3P16989 SEC22C-203ENST00000383750 752 ntTSL 320.54■□□□□ 0.889e-8■□□□□ 9.4
YBX3P16989 SEC22C-208ENST00000445388 823 ntTSL 520.18■□□□□ 0.829e-8■□□□□ 9.4
YBX3P16989 SEC22C-204ENST00000416880 527 ntTSL 418.37■□□□□ 0.539e-8■□□□□ 9.4
YBX3P16989 SEC22C-210ENST00000450981 721 ntTSL 313.64□□□□□ -0.239e-8■□□□□ 9.4
YBX3P16989 SEC22C-216ENST00000493107 827 ntTSL 511.17□□□□□ -0.629e-8■□□□□ 9.4
YBX3P16989 SEC22C-215ENST00000487701 729 ntTSL 38.32□□□□□ -1.089e-8■□□□□ 9.4
YBX3P16989 CD81-217ENST00000533417 444 ntTSL 324.56■■□□□ 1.523e-9■□□□□ 9.4
YBX3P16989 CD81-210ENST00000493525 396 ntTSL 519.37■□□□□ 0.693e-9■□□□□ 9.4
YBX3P16989 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC26.68■■□□□ 1.861e-8■□□□□ 9.4
YBX3P16989 JPT2-211ENST00000567717 857 ntTSL 324.18■■□□□ 1.461e-8■□□□□ 9.4
YBX3P16989 JPT2-213ENST00000569256 911 ntTSL 1 (best)23.37■■□□□ 1.331e-8■□□□□ 9.4
YBX3P16989 JPT2-209ENST00000566742 593 ntTSL 422.31■■□□□ 1.161e-8■□□□□ 9.4
YBX3P16989 JPT2-203ENST00000382711 894 ntTSL 4 BASIC17.96■□□□□ 0.471e-8■□□□□ 9.4
YBX3P16989 JPT2-208ENST00000566691 601 ntTSL 516.37■□□□□ 0.211e-8■□□□□ 9.4
YBX3P16989 JPT2-202ENST00000382710 962 ntTSL 2 BASIC15.67■□□□□ 0.11e-8■□□□□ 9.4
YBX3P16989 JPT2-214ENST00000569765 782 ntTSL 2 BASIC15.46■□□□□ 0.071e-8■□□□□ 9.4
Retrieved 100 of 29,075 protein–RNA pairs in 144.4 ms