RNA–Protein interactions for RNA: ENST00000487701.1

SEC22C-215, Transcript of SEC22 homolog C, vesicle trafficking protein, humanhuman

TSL 3

Gene SEC22C, Length 729 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC22C-215ENST00000487701 AEBP2Q6ZN18 517 aaPredicted RBP25.97■■□□□ 1.75
SEC22C-215ENST00000487701 CHIC1Q5VXU3 224 aa24.72■■□□□ 1.55
SEC22C-215ENST00000487701 SENP3Q9H4L4 574 aaPredicted RBP22.13■■□□□ 1.13
SEC22C-215ENST00000487701 PHF23Q9BUL5 403 aaPredicted RBP21.87■■□□□ 1.09
SEC22C-215ENST00000487701 FOXD1Q16676 465 aa20.62■□□□□ 0.89
SEC22C-215ENST00000487701 PLPPR3Q6T4P5 718 aa19.76■□□□□ 0.75
SEC22C-215ENST00000487701 PPP6R1Q9UPN7 881 aa19.35■□□□□ 0.69
SEC22C-215ENST00000487701 ADRA2BP18089 450 aa19.28■□□□□ 0.68
SEC22C-215ENST00000487701 PIAS4Q8N2W9 510 aaPredicted RBP19.27■□□□□ 0.68
SEC22C-215ENST00000487701 MSH5O43196 834 aa19.26■□□□□ 0.67
SEC22C-215ENST00000487701 POTEDQ86YR6 584 aa18.7■□□□□ 0.58
SEC22C-215ENST00000487701 MAPK8IP2Q13387 824 aaPredicted RBP17.69■□□□□ 0.42
SEC22C-215ENST00000487701 SCAF1Q9H7N4 1312 aaKnown RBP17.64■□□□□ 0.41
SEC22C-215ENST00000487701 DMRT2Q9Y5R5 561 aa17.56■□□□□ 0.4
SEC22C-215ENST00000487701 PPP4R3CPQ6ZMV5 832 aa17.37■□□□□ 0.37
SEC22C-215ENST00000487701 CNKSR2Q8WXI2 1034 aa17■□□□□ 0.31
SEC22C-215ENST00000487701 HOXD11P31277 338 aaPredicted RBP16.96■□□□□ 0.31
SEC22C-215ENST00000487701 NCBP3Q53F19 620 aaKnown RBP16.87■□□□□ 0.29
SEC22C-215ENST00000487701 RNF216Q9NWF9 866 aaPredicted RBP16.84■□□□□ 0.29
SEC22C-215ENST00000487701 DCAF8L1A6NGE4 600 aa16.8■□□□□ 0.28
SEC22C-215ENST00000487701 KCNA4P22459 653 aa16.7■□□□□ 0.26
SEC22C-215ENST00000487701 NPM3O75607 178 aaKnown RBP16.59■□□□□ 0.25
SEC22C-215ENST00000487701 CACNB1Q02641 598 aaPredicted RBP16.49■□□□□ 0.23
SEC22C-215ENST00000487701 RNF39Q9H2S5 420 aa16.46■□□□□ 0.23
SEC22C-215ENST00000487701 DNAJC5BQ9UF47 199 aa16.38■□□□□ 0.21
SEC22C-215ENST00000487701 C1QBPQ07021 282 aaKnown RBP16.23■□□□□ 0.19
SEC22C-215ENST00000487701 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.13■□□□□ 0.17
SEC22C-215ENST00000487701 SLC4A1APQ9BWU0 796 aaKnown RBP15.88■□□□□ 0.13
SEC22C-215ENST00000487701 U3KPZ7 1027 aaPredicted RBP15.8■□□□□ 0.12
SEC22C-215ENST00000487701 NISCHQ9Y2I1 1504 aa15.75■□□□□ 0.11
SEC22C-215ENST00000487701 SLC4A2P04920 1241 aa15.71■□□□□ 0.11
SEC22C-215ENST00000487701 SPINK5Q9NQ38 1064 aaPredicted RBP15.56■□□□□ 0.08
SEC22C-215ENST00000487701 CAPN15O75808 1086 aa15.51■□□□□ 0.07
SEC22C-215ENST00000487701 FOXD4L1Q9NU39 408 aa15.44■□□□□ 0.06
SEC22C-215ENST00000487701 DSG3P32926 999 aa15.43■□□□□ 0.06
SEC22C-215ENST00000487701 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.37■□□□□ 0.05
SEC22C-215ENST00000487701 MYCNP04198 464 aaPredicted RBP15.37■□□□□ 0.05
SEC22C-215ENST00000487701 HNRNPUL2Q1KMD3 747 aaKnown RBP15.37■□□□□ 0.05
SEC22C-215ENST00000487701 APLP2Q06481 763 aa15.36■□□□□ 0.05
SEC22C-215ENST00000487701 ZBTB22O15209 634 aa15.34■□□□□ 0.05
SEC22C-215ENST00000487701 SAMD1Q6SPF0 538 aaPredicted RBP15.29■□□□□ 0.04
SEC22C-215ENST00000487701 TRHP20396 242 aaPredicted RBP15.28■□□□□ 0.04
SEC22C-215ENST00000487701 ZNF219Q9P2Y4 722 aaPredicted RBP15.26■□□□□ 0.03
SEC22C-215ENST00000487701 EHMT2Q96KQ7 1210 aa15.21■□□□□ 0.03
SEC22C-215ENST00000487701 ABCB7O75027 752 aa15.15■□□□□ 0.02
SEC22C-215ENST00000487701 CSRNP3Q8WYN3 585 aa15.04■□□□□ -0
SEC22C-215ENST00000487701 ATF5Q9Y2D1 282 aaPredicted RBP14.94□□□□□ -0.02
SEC22C-215ENST00000487701 POLA2Q14181 598 aa14.91□□□□□ -0.02
SEC22C-215ENST00000487701 ATXN8OSP0DMR3 200 aa14.89□□□□□ -0.03
SEC22C-215ENST00000487701 RBM42Q9BTD8 480 aaKnown RBP14.71□□□□□ -0.05
SEC22C-215ENST00000487701 POTEHQ6S545 545 aa14.66□□□□□ -0.06
SEC22C-215ENST00000487701 ZBTB12Q9Y330 459 aaPredicted RBP14.59□□□□□ -0.07
SEC22C-215ENST00000487701 OSCARQ8IYS5 282 aa14.4□□□□□ -0.1
SEC22C-215ENST00000487701 AKT1S1Q96B36 256 aa14.4□□□□□ -0.1
SEC22C-215ENST00000487701 FBLN2P98095 1184 aa14.39□□□□□ -0.11
SEC22C-215ENST00000487701 CHRDL2Q6WN34 429 aa14.37□□□□□ -0.11
SEC22C-215ENST00000487701 MKRN4PQ13434 485 aaPredicted RBP14.27□□□□□ -0.13
SEC22C-215ENST00000487701 REM2Q8IYK8 340 aaPredicted RBP14.26□□□□□ -0.13
SEC22C-215ENST00000487701 SPDYE2BA6NHP3 402 aa14.16□□□□□ -0.14
SEC22C-215ENST00000487701 SPDYE6P0CI01 402 aa14.16□□□□□ -0.14
SEC22C-215ENST00000487701 SPDYE2Q495Y8 402 aa14.16□□□□□ -0.14
SEC22C-215ENST00000487701 PITPNM1O00562 1244 aa14.09□□□□□ -0.15
SEC22C-215ENST00000487701 CCDC180Q9P1Z9 1646 aa14.06□□□□□ -0.16
SEC22C-215ENST00000487701 PIP4P2Q8N4L2 257 aa14.04□□□□□ -0.16
SEC22C-215ENST00000487701 ZNF692Q9BU19 519 aaPredicted RBP14.02□□□□□ -0.17
SEC22C-215ENST00000487701 SSUH2Q9Y2M2 353 aa13.99□□□□□ -0.17
SEC22C-215ENST00000487701 FXR2P51116 673 aaKnown RBP eCLIP13.98□□□□□ -0.17
SEC22C-215ENST00000487701 SPDYE1Q8NFV5 336 aaPredicted RBP13.89□□□□□ -0.19
SEC22C-215ENST00000487701 SPDYE4A6NLX3 237 aa13.88□□□□□ -0.19
SEC22C-215ENST00000487701 PABPN1Q86U42 306 aaKnown RBP eCLIP13.84□□□□□ -0.19
SEC22C-215ENST00000487701 CLEC11AQ9Y240 323 aa13.84□□□□□ -0.19
SEC22C-215ENST00000487701 SP7Q8TDD2 431 aaPredicted RBP13.78□□□□□ -0.2
SEC22C-215ENST00000487701 HAX1O00165 279 aa13.76□□□□□ -0.21
SEC22C-215ENST00000487701 PRKAR2AP13861 404 aaKnown RBP13.73□□□□□ -0.21
SEC22C-215ENST00000487701 FKBP8Q14318 412 aa13.69□□□□□ -0.22
SEC22C-215ENST00000487701 ABCC9O60706 1549 aa13.68□□□□□ -0.22
SEC22C-215ENST00000487701 PRR29P0C7W0 189 aa13.65□□□□□ -0.22
SEC22C-215ENST00000487701 EVX2Q03828 476 aa13.62□□□□□ -0.23
SEC22C-215ENST00000487701 CHADLQ6NUI6 762 aa13.58□□□□□ -0.24
SEC22C-215ENST00000487701 STAG3Q9UJ98 1225 aa13.54□□□□□ -0.24
SEC22C-215ENST00000487701 C19orf67A6NJJ6 358 aa13.53□□□□□ -0.24
SEC22C-215ENST00000487701 PROM2Q8N271 834 aa13.53□□□□□ -0.24
SEC22C-215ENST00000487701 FARP1Q9Y4F1 1045 aaPredicted RBP13.41□□□□□ -0.26
SEC22C-215ENST00000487701 CREBZFQ9NS37 354 aa13.33□□□□□ -0.28
SEC22C-215ENST00000487701 GABBR2O75899 941 aa13.31□□□□□ -0.28
SEC22C-215ENST00000487701 CD44P16070 742 aaKnown RBP13.29□□□□□ -0.28
SEC22C-215ENST00000487701 FBXO3Q9UK99 471 aa13.25□□□□□ -0.29
SEC22C-215ENST00000487701 MIER1Q8N108 512 aa13.21□□□□□ -0.29
SEC22C-215ENST00000487701 PLEKHG5O94827 1062 aa13.2□□□□□ -0.3
SEC22C-215ENST00000487701 PLCD3Q8N3E9 789 aa13.19□□□□□ -0.3
SEC22C-215ENST00000487701 RB1CC1Q8TDY2 1594 aa13.17□□□□□ -0.3
SEC22C-215ENST00000487701 NACADO15069 1562 aa13.15□□□□□ -0.3
SEC22C-215ENST00000487701 ZCCHC6Q5VYS8 1495 aaKnown RBP13.14□□□□□ -0.31
SEC22C-215ENST00000487701 MNX1P50219 401 aaPredicted RBP13.13□□□□□ -0.31
SEC22C-215ENST00000487701 CLCN6P51797 869 aa13.13□□□□□ -0.31
SEC22C-215ENST00000487701 ZRANB1Q9UGI0 708 aa13.12□□□□□ -0.31
SEC22C-215ENST00000487701 NPM1P06748 294 aaKnown RBP eCLIP13.11□□□□□ -0.31
SEC22C-215ENST00000487701 ZNF579Q8NAF0 562 aaKnown RBP13.11□□□□□ -0.31
SEC22C-215ENST00000487701 VASPP50552 380 aaPredicted RBP13.08□□□□□ -0.32
SEC22C-215ENST00000487701 MYO15BQ96JP2 1530 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms