RNA–Protein interactions for RNA: ENST00000216288.11

MARK3-201, Transcript of microtubule affinity regulating kinase 3, humanhuman

TSL 1 (best) BASIC

Gene MARK3, Length 2,911 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MARK3-201ENST00000216288 NISCHQ9Y2I1 1504 aa24.54■■□□□ 1.52
MARK3-201ENST00000216288 SHROOM4Q9ULL8 1493 aa21.84■■□□□ 1.09
MARK3-201ENST00000216288 SUPT5HO00267 1087 aaKnown RBP21.49■■□□□ 1.03
MARK3-201ENST00000216288 DCAF8L2P0C7V8 631 aa21.26■□□□□ 0.99
MARK3-201ENST00000216288 ZCCHC6Q5VYS8 1495 aaKnown RBP20.71■□□□□ 0.91
MARK3-201ENST00000216288 CHIC1Q5VXU3 224 aa20.63■□□□□ 0.89
MARK3-201ENST00000216288 MYO15BQ96JP2 1530 aa20.59■□□□□ 0.89
MARK3-201ENST00000216288 PCGF6Q9BYE7 350 aa20.43■□□□□ 0.86
MARK3-201ENST00000216288 CCDC180Q9P1Z9 1646 aa20.38■□□□□ 0.85
MARK3-201ENST00000216288 LOC105371045A0A1W2PR82 267 aa20.35■□□□□ 0.85
MARK3-201ENST00000216288 PPARGC1BQ86YN6 1023 aaKnown RBP20.22■□□□□ 0.83
MARK3-201ENST00000216288 HRCP23327 699 aa20.2■□□□□ 0.82
MARK3-201ENST00000216288 EHMT2Q96KQ7 1210 aa20.13■□□□□ 0.81
MARK3-201ENST00000216288 FAM9AQ8IZU1 332 aaPredicted RBP19.99■□□□□ 0.79
MARK3-201ENST00000216288 TRIM41Q8WV44 630 aa19.75■□□□□ 0.75
MARK3-201ENST00000216288 SCRIBQ14160 1630 aa19.75■□□□□ 0.75
MARK3-201ENST00000216288 DCAF1Q9Y4B6 1507 aa19.74■□□□□ 0.75
MARK3-201ENST00000216288 RSF1Q96T23 1441 aaPredicted RBP19.65■□□□□ 0.74
MARK3-201ENST00000216288 TRIM26Q12899 539 aaPredicted RBP19.64■□□□□ 0.73
MARK3-201ENST00000216288 ABCC9O60706 1549 aa19.57■□□□□ 0.72
MARK3-201ENST00000216288 RB1CC1Q8TDY2 1594 aa19.49■□□□□ 0.71
MARK3-201ENST00000216288 CECR2Q9BXF3 1484 aa19.45■□□□□ 0.7
MARK3-201ENST00000216288 TTBK1Q5TCY1 1321 aaPredicted RBP19.44■□□□□ 0.7
MARK3-201ENST00000216288 MROH2BQ7Z745 1585 aa19.27■□□□□ 0.67
MARK3-201ENST00000216288 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.2■□□□□ 0.66
MARK3-201ENST00000216288 WIZO95785 1651 aa19.16■□□□□ 0.66
MARK3-201ENST00000216288 ZEB1P37275 1124 aaPredicted RBP19.07■□□□□ 0.64
MARK3-201ENST00000216288 CCER1Q8TC90 406 aaPredicted RBP19.03■□□□□ 0.64
MARK3-201ENST00000216288 PABPN1Q86U42 306 aaKnown RBP eCLIP19.03■□□□□ 0.64
MARK3-201ENST00000216288 NACADO15069 1562 aa18.99■□□□□ 0.63
MARK3-201ENST00000216288 ABCC8Q09428 1581 aa18.95■□□□□ 0.62
MARK3-201ENST00000216288 RANGAP1P46060 587 aaPredicted RBP18.91■□□□□ 0.62
MARK3-201ENST00000216288 UBTFP17480 764 aaKnown RBP18.9■□□□□ 0.62
MARK3-201ENST00000216288 CCDC88BA6NC98 1476 aa18.88■□□□□ 0.61
MARK3-201ENST00000216288 SCAF1Q9H7N4 1312 aaKnown RBP18.88■□□□□ 0.61
MARK3-201ENST00000216288 SOGA1O94964 1423 aa18.85■□□□□ 0.61
MARK3-201ENST00000216288 RUSC2Q8N2Y8 1516 aa18.78■□□□□ 0.6
MARK3-201ENST00000216288 BAZ1AQ9NRL2 1556 aaPredicted RBP18.77■□□□□ 0.59
MARK3-201ENST00000216288 CSRNP3Q8WYN3 585 aa18.71■□□□□ 0.59
MARK3-201ENST00000216288 CEP162Q5TB80 1403 aa18.71■□□□□ 0.58
MARK3-201ENST00000216288 HNRNPUL2Q1KMD3 747 aaKnown RBP18.69■□□□□ 0.58
MARK3-201ENST00000216288 DIEXFQ68CQ4 756 aaKnown RBP18.66■□□□□ 0.58
MARK3-201ENST00000216288 NEUROD1Q13562 356 aa18.65■□□□□ 0.58
MARK3-201ENST00000216288 EIF4G1Q04637 1599 aaKnown RBP18.63■□□□□ 0.57
MARK3-201ENST00000216288 TOP2AP11388 1531 aaKnown RBP18.62■□□□□ 0.57
MARK3-201ENST00000216288 SMARCA4P51532 1647 aa18.62■□□□□ 0.57
MARK3-201ENST00000216288 SMARCA2P51531 1590 aa18.61■□□□□ 0.57
MARK3-201ENST00000216288 YTHDC1Q96MU7 727 aaKnown RBP18.58■□□□□ 0.57
MARK3-201ENST00000216288 TNIKQ9UKE5 1360 aa18.52■□□□□ 0.55
MARK3-201ENST00000216288 ACIN1Q9UKV3 1341 aaKnown RBP18.51■□□□□ 0.55
MARK3-201ENST00000216288 GTF3C3Q9Y5Q9 886 aa18.49■□□□□ 0.55
MARK3-201ENST00000216288 UNC13AQ9UPW8 1703 aa18.47■□□□□ 0.55
MARK3-201ENST00000216288 WRNQ14191 1432 aaPredicted RBP eCLIP18.46■□□□□ 0.55
MARK3-201ENST00000216288 APLP2Q06481 763 aa18.39■□□□□ 0.53
MARK3-201ENST00000216288 GOLGA3Q08378 1498 aa18.38■□□□□ 0.53
MARK3-201ENST00000216288 ZNF316A6NFI3 1004 aaPredicted RBP18.36■□□□□ 0.53
MARK3-201ENST00000216288 CLIP1P30622 1438 aa18.33■□□□□ 0.52
MARK3-201ENST00000216288 CENPBP07199 599 aaPredicted RBP18.33■□□□□ 0.52
MARK3-201ENST00000216288 MIER1Q8N108 512 aa18.32■□□□□ 0.52
MARK3-201ENST00000216288 SYNJ1O43426 1573 aa18.32■□□□□ 0.52
MARK3-201ENST00000216288 BICRAQ9NZM4 1560 aa18.31■□□□□ 0.52
MARK3-201ENST00000216288 RAPGEF2Q9Y4G8 1499 aa18.29■□□□□ 0.52
MARK3-201ENST00000216288 EEA1Q15075 1411 aa18.28■□□□□ 0.52
MARK3-201ENST00000216288 ITGAEP38570 1179 aa18.27■□□□□ 0.52
MARK3-201ENST00000216288 BAZ1BQ9UIG0 1483 aaKnown RBP18.23■□□□□ 0.51
MARK3-201ENST00000216288 ATAD2BQ9ULI0 1458 aa18.23■□□□□ 0.51
MARK3-201ENST00000216288 CEP164Q9UPV0 1460 aa18.22■□□□□ 0.51
MARK3-201ENST00000216288 KANK4Q5T7N3 995 aaPredicted RBP18.2■□□□□ 0.5
MARK3-201ENST00000216288 PELP1Q8IZL8 1130 aaKnown RBP18.15■□□□□ 0.5
MARK3-201ENST00000216288 VPS8Q8N3P4 1428 aa18.14■□□□□ 0.5
MARK3-201ENST00000216288 KIF21BO75037 1637 aa18.06■□□□□ 0.48
MARK3-201ENST00000216288 ATP1B4Q9UN42 357 aaPredicted RBP18.04■□□□□ 0.48
MARK3-201ENST00000216288 P3H3Q8IVL6 736 aa18.02■□□□□ 0.47
MARK3-201ENST00000216288 PEG3Q9GZU2 1588 aa18■□□□□ 0.47
MARK3-201ENST00000216288 ARAP1Q96P48 1450 aa17.94■□□□□ 0.46
MARK3-201ENST00000216288 DHX57Q6P158 1386 aaKnown RBP17.93■□□□□ 0.46
MARK3-201ENST00000216288 TOP2BQ02880 1626 aa17.89■□□□□ 0.45
MARK3-201ENST00000216288 KCNH8Q96L42 1107 aa17.88■□□□□ 0.45
MARK3-201ENST00000216288 HIRIP3Q9BW71 556 aaPredicted RBP17.87■□□□□ 0.45
MARK3-201ENST00000216288 CUX1P39880 1505 aa17.86■□□□□ 0.45
MARK3-201ENST00000216288 PRXQ9BXM0 1461 aa17.86■□□□□ 0.45
MARK3-201ENST00000216288 FAM50AQ14320 339 aaKnown RBP17.86■□□□□ 0.45
MARK3-201ENST00000216288 KIF27Q86VH2 1401 aa17.83■□□□□ 0.45
MARK3-201ENST00000216288 SIN3AQ96ST3 1273 aa17.81■□□□□ 0.44
MARK3-201ENST00000216288 CCNB3Q8WWL7 1395 aa17.78■□□□□ 0.44
MARK3-201ENST00000216288 CUX2O14529 1486 aa17.77■□□□□ 0.43
MARK3-201ENST00000216288 ARHGAP35Q9NRY4 1499 aa17.76■□□□□ 0.43
MARK3-201ENST00000216288 RAB3GAP2Q9H2M9 1393 aa17.72■□□□□ 0.43
MARK3-201ENST00000216288 IGF1RP08069 1367 aa17.72■□□□□ 0.43
MARK3-201ENST00000216288 DDX10Q13206 875 aaKnown RBP17.71■□□□□ 0.43
MARK3-201ENST00000216288 BCANQ96GW7 911 aa17.71■□□□□ 0.43
MARK3-201ENST00000216288 NCAPD3P42695 1498 aa17.71■□□□□ 0.43
MARK3-201ENST00000216288 BIVM-ERCC5R4GMW8 1640 aa17.71■□□□□ 0.42
MARK3-201ENST00000216288 ERICH3Q5RHP9 1530 aa17.69■□□□□ 0.42
MARK3-201ENST00000216288 CARMIL1Q5VZK9 1371 aa17.67■□□□□ 0.42
MARK3-201ENST00000216288 CFTRP13569 1480 aa17.66■□□□□ 0.42
MARK3-201ENST00000216288 RRBP1Q9P2E9 1410 aaKnown RBP17.66■□□□□ 0.42
MARK3-201ENST00000216288 SUPT16HQ9Y5B9 1047 aaKnown RBP17.66■□□□□ 0.42
MARK3-201ENST00000216288 PHLDB1Q86UU1 1377 aa17.64■□□□□ 0.41
MARK3-201ENST00000216288 CLSPNQ9HAW4 1339 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms