Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 BAZ2A-201ENST00000379441 8831 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.674e-7■□□□□ 10.5
YBX3P16989 BAZ2A-211ENST00000549884 6050 ntAPPRIS ALT2 TSL 2 BASIC10.75□□□□□ -0.694e-7■□□□□ 10.5
YBX3P16989 BAZ2A-214ENST00000551812 8600 ntAPPRIS P3 TSL 1 (best) BASIC10.13□□□□□ -0.794e-7■□□□□ 10.5
YBX3P16989 VMA21-202ENST00000370361 693 ntTSL 5 BASIC21.76■■□□□ 1.072e-7■□□□□ 10.5
YBX3P16989 VMA21-203ENST00000477649 485 ntTSL 38.76□□□□□ -1.012e-7■□□□□ 10.5
YBX3P16989 VMA21-201ENST00000330374 4717 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.152e-7■□□□□ 10.5
YBX3P16989 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.954e-9■□□□□ 10.5
YBX3P16989 NDUFB7-202ENST00000593353 529 ntTSL 220.97■□□□□ 0.954e-9■□□□□ 10.5
YBX3P16989 WDR46-236ENST00000477718 941 ntTSL 519.36■□□□□ 0.692e-6■□□□□ 10.5
YBX3P16989 WDR46-238ENST00000488944 538 ntTSL 317.74■□□□□ 0.432e-6■□□□□ 10.5
YBX3P16989 WDR46-232ENST00000444176 968 ntTSL 511.95□□□□□ -0.52e-6■□□□□ 10.5
YBX3P16989 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.784e-7■□□□□ 10.5
YBX3P16989 LBR-201ENST00000272163 3745 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.748e-11■□□□□ 10.5
YBX3P16989 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.768e-11■□□□□ 10.5
YBX3P16989 MTHFR-217ENST00000641820 1569 ntBASIC17.53■□□□□ 0.43e-6■□□□□ 10.5
YBX3P16989 MTHFR-210ENST00000641407 2387 ntBASIC16.26■□□□□ 0.193e-6■□□□□ 10.5
YBX3P16989 MTHFR-216ENST00000641805 2945 nt14.14□□□□□ -0.153e-6■□□□□ 10.5
YBX3P16989 MTHFR-212ENST00000641446 2820 nt13.67□□□□□ -0.223e-6■□□□□ 10.5
YBX3P16989 MTHFR-215ENST00000641759 2454 nt12.82□□□□□ -0.363e-6■□□□□ 10.5
YBX3P16989 MTHFR-214ENST00000641747 3227 nt12.64□□□□□ -0.393e-6■□□□□ 10.5
YBX3P16989 MTHFR-204ENST00000376590 7094 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.53e-6■□□□□ 10.5
YBX3P16989 NSMF-210ENST00000484316 933 ntTSL 322.12■■□□□ 1.132e-7■□□□□ 10.5
YBX3P16989 NSMF-207ENST00000371482 2888 ntTSL 1 (best)16.44■□□□□ 0.222e-7■□□□□ 10.5
YBX3P16989 MRPS35-203ENST00000538315 1715 ntTSL 2 BASIC14.08□□□□□ -0.161e-6■□□□□ 10.5
YBX3P16989 MRPS35-201ENST00000081029 1888 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.261e-6■□□□□ 10.5
YBX3P16989 NAT10-202ENST00000527971 1600 ntTSL 2 BASIC14.95□□□□□ -0.024e-7■□□□□ 10.5
YBX3P16989 NAT10-210ENST00000615292 3329 ntTSL 5 BASIC9.66□□□□□ -0.864e-7■□□□□ 10.5
YBX3P16989 NAT10-205ENST00000531159 3436 ntAPPRIS ALT2 TSL 2 BASIC8.52□□□□□ -1.054e-7■□□□□ 10.5
YBX3P16989 NAT10-201ENST00000257829 4002 ntAPPRIS P3 TSL 1 (best) BASIC8.01□□□□□ -1.134e-7■□□□□ 10.5
YBX3P16989 RBBP4-218ENST00000527118 700 ntTSL 320.99■□□□□ 0.955e-18■□□□□ 10.5
YBX3P16989 RBBP4-203ENST00000401893 762 ntTSL 216.7■□□□□ 0.265e-18■□□□□ 10.5
YBX3P16989 RBBP4-215ENST00000524393 583 ntTSL 316.7■□□□□ 0.265e-18■□□□□ 10.5
YBX3P16989 RBBP4-217ENST00000526193 568 ntTSL 411.5□□□□□ -0.575e-18■□□□□ 10.5
YBX3P16989 RBBP4-211ENST00000477563 544 ntTSL 510.84□□□□□ -0.675e-18■□□□□ 10.5
YBX3P16989 ENO1-204ENST00000489867 732 ntTSL 1 (best)21■□□□□ 0.955e-74■□□□□ 10.5
YBX3P16989 MRPS27-211ENST00000522042 578 ntTSL 411.11□□□□□ -0.633e-10■□□□□ 10.5
YBX3P16989 MRPS27-214ENST00000522562 832 ntTSL 1 (best)10.33□□□□□ -0.763e-10■□□□□ 10.5
YBX3P16989 EEF1B2-204ENST00000415904 649 ntTSL 316.07■□□□□ 0.165e-24■□□□□ 10.5
YBX3P16989 EEF1B2-206ENST00000435123 389 ntTSL 510.92□□□□□ -0.665e-24■□□□□ 10.5
YBX3P16989 EIF3A-202ENST00000462527 1192 ntTSL 29.22□□□□□ -0.938e-9■□□□□ 10.5
YBX3P16989 CHD8-213ENST00000557364 8137 ntAPPRIS ALT2 TSL 5 BASIC8.51□□□□□ -1.053e-6■□□□□ 10.5
YBX3P16989 CHD8-201ENST00000399982 8229 ntAPPRIS ALT2 TSL 1 (best) BASIC8.21□□□□□ -1.093e-6■□□□□ 10.5
YBX3P16989 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.423e-6■□□□□ 10.5
YBX3P16989 RPL13-215ENST00000570149 435 ntTSL 218.39■□□□□ 0.533e-64■□□□□ 10.5
YBX3P16989 RPL13-206ENST00000472354 631 ntTSL 313.79□□□□□ -0.23e-64■□□□□ 10.5
YBX3P16989 HK1-209ENST00000470050 314 ntTSL 522.01■■□□□ 1.119e-14■□□□□ 10.5
YBX3P16989 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC16.87■□□□□ 0.296e-7■□□□□ 10.5
YBX3P16989 UBE2V1-222ENST00000557021 2258 ntTSL 5 BASIC16.87■□□□□ 0.296e-7■□□□□ 10.5
YBX3P16989 UBE2V1-203ENST00000371674 2133 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.296e-7■□□□□ 10.5
YBX3P16989 UBE2V1-206ENST00000415862 2387 ntTSL 1 (best) BASIC11.1□□□□□ -0.636e-7■□□□□ 10.5
YBX3P16989 UBE2V1-202ENST00000371657 1973 ntTSL 4 BASIC9.75□□□□□ -0.856e-7■□□□□ 10.5
YBX3P16989 UBE2V1-223ENST00000617119 2432 ntTSL 4 BASIC8.89□□□□□ -0.996e-7■□□□□ 10.5
YBX3P16989 UBE2V1-205ENST00000396059 1983 ntTSL 1 (best)8.88□□□□□ -0.996e-7■□□□□ 10.5
YBX3P16989 UBE2V1-204ENST00000371677 2459 ntTSL 2 BASIC8.4□□□□□ -1.066e-7■□□□□ 10.5
YBX3P16989 UBE2V1-201ENST00000340309 2536 ntTSL 1 (best) BASIC7.54□□□□□ -1.26e-7■□□□□ 10.5
YBX3P16989 SF3A2-203ENST00000587637 501 ntTSL 223.34■■□□□ 1.332e-14■□□□□ 10.5
YBX3P16989 RPL41-206ENST00000552314 595 ntTSL 212.92□□□□□ -0.348e-10■□□□□ 10.5
YBX3P16989 KHSRP-207ENST00000595548 801 ntTSL 220.28■□□□□ 0.842e-12■□□□□ 10.5
YBX3P16989 KHSRP-204ENST00000595112 745 ntTSL 319.04■□□□□ 0.642e-12■□□□□ 10.5
YBX3P16989 KHSRP-210ENST00000599395 837 ntTSL 516.97■□□□□ 0.312e-12■□□□□ 10.5
YBX3P16989 FADS1-210ENST00000496123 693 ntTSL 514.84□□□□□ -0.031e-13■□□□□ 10.5
YBX3P16989 COPB1-201ENST00000249923 3481 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.763e-9■□□□□ 10.5
YBX3P16989 COPB1-202ENST00000439561 3382 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.953e-9■□□□□ 10.5
YBX3P16989 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC29.91■■■□□ 2.381e-7■□□□□ 10.5
YBX3P16989 ATP5C1-210ENST00000493053 1096 ntTSL 520.58■□□□□ 0.891e-7■□□□□ 10.5
YBX3P16989 ATP5C1-206ENST00000465936 292 ntTSL 320.23■□□□□ 0.831e-7■□□□□ 10.5
YBX3P16989 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.331e-7■□□□□ 10.5
YBX3P16989 ATP5C1-204ENST00000460820 622 ntTSL 213.56□□□□□ -0.241e-7■□□□□ 10.5
YBX3P16989 CSNK1D-215ENST00000580784 1081 ntTSL 1 (best)28.62■■■□□ 2.172e-6■□□□□ 10.5
YBX3P16989 CSNK1D-201ENST00000269361 1088 ntTSL 523.8■■□□□ 1.42e-6■□□□□ 10.5
YBX3P16989 HDLBP-232ENST00000470482 624 ntTSL 215.85■□□□□ 0.135e-8■□□□□ 10.5
YBX3P16989 CMBL-205ENST00000510532 701 ntTSL 38.77□□□□□ -1.011e-6■□□□□ 10.5
YBX3P16989 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.882e-9■□□□□ 10.5
YBX3P16989 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC20.19■□□□□ 0.822e-9■□□□□ 10.5
YBX3P16989 ADIPOR1-204ENST00000426229 879 ntTSL 221.58■■□□□ 1.053e-7■□□□□ 10.5
YBX3P16989 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.78■□□□□ 0.924e-8■□□□□ 10.5
YBX3P16989 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.22■□□□□ 0.674e-8■□□□□ 10.5
YBX3P16989 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC17.72■□□□□ 0.434e-8■□□□□ 10.5
YBX3P16989 PRMT5-202ENST00000324366 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.274e-8■□□□□ 10.5
YBX3P16989 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC19■□□□□ 0.633e-12■□□□□ 10.5
YBX3P16989 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.431e-20■□□□□ 10.5
YBX3P16989 PIGS-214ENST00000584080 584 ntTSL 418.16■□□□□ 0.52e-6■□□□□ 10.5
YBX3P16989 ACTR1A-203ENST00000480947 512 ntTSL 319.27■□□□□ 0.684e-7■□□□□ 10.5
YBX3P16989 ACTR1A-207ENST00000636707 1046 ntTSL 517.28■□□□□ 0.364e-7■□□□□ 10.5
YBX3P16989 ACTR1A-204ENST00000481044 689 ntTSL 213.58□□□□□ -0.244e-7■□□□□ 10.5
YBX3P16989 ACTR1A-201ENST00000369905 2829 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.454e-7■□□□□ 10.5
YBX3P16989 ACTR1A-205ENST00000487599 2726 ntTSL 5 BASIC11.63□□□□□ -0.554e-7■□□□□ 10.5
YBX3P16989 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.347e-7■□□□□ 10.5
YBX3P16989 BCKDHA-202ENST00000457836 1745 ntTSL 2 BASIC17.07■□□□□ 0.327e-7■□□□□ 10.5
YBX3P16989 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.267e-7■□□□□ 10.5
YBX3P16989 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC20.27■□□□□ 0.847e-7■□□□□ 10.5
YBX3P16989 TFDP2-206ENST00000474279 379 ntTSL 210.56□□□□□ -0.721e-10■□□□□ 10.5
YBX3P16989 IGF1R-210ENST00000559925 2280 ntTSL 1 (best)15.04■□□□□ -02e-7■□□□□ 10.5
YBX3P16989 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC26.41■■□□□ 1.822e-7■□□□□ 10.5
YBX3P16989 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.72e-7■□□□□ 10.5
YBX3P16989 SMIM20-203ENST00000515764 773 ntTSL 510.78□□□□□ -0.682e-7■□□□□ 10.5
YBX3P16989 SMIM20-202ENST00000514384 774 ntTSL 5 BASIC10.17□□□□□ -0.782e-7■□□□□ 10.5
YBX3P16989 RHOC-213ENST00000473074 943 ntTSL 517.54■□□□□ 0.42e-10■□□□□ 10.5
YBX3P16989 EIF3D-208ENST00000458572 883 ntTSL 310.78□□□□□ -0.688e-10■□□□□ 10.5
YBX3P16989 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.7■□□□□ 0.265e-6■□□□□ 10.5
Retrieved 100 of 29,075 protein–RNA pairs in 157 ms