RNA–Protein interactions for RNA: ENST00000249923.7

COPB1-201, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-201ENST00000249923 NISCHQ9Y2I1 1504 aa21.27■■□□□ 1
COPB1-201ENST00000249923 SHROOM4Q9ULL8 1493 aa18.12■□□□□ 0.49
COPB1-201ENST00000249923 CCDC180Q9P1Z9 1646 aa18.07■□□□□ 0.48
COPB1-201ENST00000249923 ZCCHC6Q5VYS8 1495 aaKnown RBP18.02■□□□□ 0.48
COPB1-201ENST00000249923 SUPT5HO00267 1087 aaKnown RBP17.68■□□□□ 0.42
COPB1-201ENST00000249923 DCAF8L2P0C7V8 631 aa17.46■□□□□ 0.39
COPB1-201ENST00000249923 DCAF1Q9Y4B6 1507 aa17.43■□□□□ 0.38
COPB1-201ENST00000249923 MYO15BQ96JP2 1530 aa17.37■□□□□ 0.37
COPB1-201ENST00000249923 CHIC1Q5VXU3 224 aa17.26■□□□□ 0.35
COPB1-201ENST00000249923 ABCC9O60706 1549 aa17.03■□□□□ 0.32
COPB1-201ENST00000249923 SCRIBQ14160 1630 aa16.97■□□□□ 0.31
COPB1-201ENST00000249923 RSF1Q96T23 1441 aaPredicted RBP16.85■□□□□ 0.29
COPB1-201ENST00000249923 LOC105371045A0A1W2PR82 267 aa16.78■□□□□ 0.28
COPB1-201ENST00000249923 RB1CC1Q8TDY2 1594 aa16.74■□□□□ 0.27
COPB1-201ENST00000249923 HRCP23327 699 aa16.69■□□□□ 0.26
COPB1-201ENST00000249923 PCGF6Q9BYE7 350 aa16.68■□□□□ 0.26
COPB1-201ENST00000249923 NACADO15069 1562 aa16.65■□□□□ 0.26
COPB1-201ENST00000249923 CECR2Q9BXF3 1484 aa16.65■□□□□ 0.26
COPB1-201ENST00000249923 MROH2BQ7Z745 1585 aa16.59■□□□□ 0.25
COPB1-201ENST00000249923 WIZO95785 1651 aa16.51■□□□□ 0.23
COPB1-201ENST00000249923 PPARGC1BQ86YN6 1023 aaKnown RBP16.46■□□□□ 0.23
COPB1-201ENST00000249923 TRIM41Q8WV44 630 aa16.42■□□□□ 0.22
COPB1-201ENST00000249923 EIF4G1Q04637 1599 aaKnown RBP16.37■□□□□ 0.21
COPB1-201ENST00000249923 BAZ1AQ9NRL2 1556 aaPredicted RBP16.37■□□□□ 0.21
COPB1-201ENST00000249923 FAM9AQ8IZU1 332 aaPredicted RBP16.34■□□□□ 0.21
COPB1-201ENST00000249923 UNC13AQ9UPW8 1703 aa16.33■□□□□ 0.2
COPB1-201ENST00000249923 TRIM26Q12899 539 aaPredicted RBP16.31■□□□□ 0.2
COPB1-201ENST00000249923 EHMT2Q96KQ7 1210 aa16.23■□□□□ 0.19
COPB1-201ENST00000249923 SMARCA4P51532 1647 aa16.22■□□□□ 0.19
COPB1-201ENST00000249923 TOP2AP11388 1531 aaKnown RBP16.18■□□□□ 0.18
COPB1-201ENST00000249923 SMARCA2P51531 1590 aa16.15■□□□□ 0.18
COPB1-201ENST00000249923 ABCC8Q09428 1581 aa16.14■□□□□ 0.17
COPB1-201ENST00000249923 CCDC88BA6NC98 1476 aa16.13■□□□□ 0.17
COPB1-201ENST00000249923 BICRAQ9NZM4 1560 aa16.09■□□□□ 0.17
COPB1-201ENST00000249923 PABPN1Q86U42 306 aaKnown RBP eCLIP15.98■□□□□ 0.15
COPB1-201ENST00000249923 SOGA1O94964 1423 aa15.96■□□□□ 0.15
COPB1-201ENST00000249923 RUSC2Q8N2Y8 1516 aa15.93■□□□□ 0.14
COPB1-201ENST00000249923 PEG3Q9GZU2 1588 aa15.92■□□□□ 0.14
COPB1-201ENST00000249923 CEP162Q5TB80 1403 aa15.83■□□□□ 0.12
COPB1-201ENST00000249923 ZEB1P37275 1124 aaPredicted RBP15.82■□□□□ 0.12
COPB1-201ENST00000249923 WRNQ14191 1432 aaPredicted RBP eCLIP15.82■□□□□ 0.12
COPB1-201ENST00000249923 SYNJ1O43426 1573 aa15.8■□□□□ 0.12
COPB1-201ENST00000249923 ATAD2BQ9ULI0 1458 aa15.77■□□□□ 0.12
COPB1-201ENST00000249923 TNIKQ9UKE5 1360 aa15.76■□□□□ 0.11
COPB1-201ENST00000249923 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.74■□□□□ 0.11
COPB1-201ENST00000249923 CSRNP3Q8WYN3 585 aa15.73■□□□□ 0.11
COPB1-201ENST00000249923 EEA1Q15075 1411 aa15.72■□□□□ 0.11
COPB1-201ENST00000249923 TTBK1Q5TCY1 1321 aaPredicted RBP15.7■□□□□ 0.1
COPB1-201ENST00000249923 BAZ1BQ9UIG0 1483 aaKnown RBP15.68■□□□□ 0.1
COPB1-201ENST00000249923 GOLGA3Q08378 1498 aa15.67■□□□□ 0.1
COPB1-201ENST00000249923 KIF21BO75037 1637 aa15.63■□□□□ 0.09
COPB1-201ENST00000249923 UBTFP17480 764 aaKnown RBP15.61■□□□□ 0.09
COPB1-201ENST00000249923 CCER1Q8TC90 406 aaPredicted RBP15.58■□□□□ 0.08
COPB1-201ENST00000249923 CEP164Q9UPV0 1460 aa15.57■□□□□ 0.08
COPB1-201ENST00000249923 RAPGEF2Q9Y4G8 1499 aa15.57■□□□□ 0.08
COPB1-201ENST00000249923 TOP2BQ02880 1626 aa15.55■□□□□ 0.08
COPB1-201ENST00000249923 BIVM-ERCC5R4GMW8 1640 aa15.51■□□□□ 0.07
COPB1-201ENST00000249923 CLIP1P30622 1438 aa15.5■□□□□ 0.07
COPB1-201ENST00000249923 HMGXB3Q12766 1538 aa15.45■□□□□ 0.06
COPB1-201ENST00000249923 VPS8Q8N3P4 1428 aa15.45■□□□□ 0.06
COPB1-201ENST00000249923 SCAF1Q9H7N4 1312 aaKnown RBP15.45■□□□□ 0.06
COPB1-201ENST00000249923 NCAPD3P42695 1498 aa15.44■□□□□ 0.06
COPB1-201ENST00000249923 CUX1P39880 1505 aa15.43■□□□□ 0.06
COPB1-201ENST00000249923 PRXQ9BXM0 1461 aa15.4■□□□□ 0.06
COPB1-201ENST00000249923 RANGAP1P46060 587 aaPredicted RBP15.36■□□□□ 0.05
COPB1-201ENST00000249923 YTHDC1Q96MU7 727 aaKnown RBP15.36■□□□□ 0.05
COPB1-201ENST00000249923 ARAP1Q96P48 1450 aa15.35■□□□□ 0.05
COPB1-201ENST00000249923 ERICH3Q5RHP9 1530 aa15.35■□□□□ 0.05
COPB1-201ENST00000249923 PELP1Q8IZL8 1130 aaKnown RBP15.35■□□□□ 0.05
COPB1-201ENST00000249923 CFTRP13569 1480 aa15.34■□□□□ 0.05
COPB1-201ENST00000249923 HNRNPUL2Q1KMD3 747 aaKnown RBP15.32■□□□□ 0.04
COPB1-201ENST00000249923 DIEXFQ68CQ4 756 aaKnown RBP15.31■□□□□ 0.04
COPB1-201ENST00000249923 NEUROD1Q13562 356 aa15.26■□□□□ 0.03
COPB1-201ENST00000249923 PRDM2Q13029 1718 aa15.25■□□□□ 0.03
COPB1-201ENST00000249923 KANK4Q5T7N3 995 aaPredicted RBP15.24■□□□□ 0.03
COPB1-201ENST00000249923 KIF27Q86VH2 1401 aa15.22■□□□□ 0.03
COPB1-201ENST00000249923 ACIN1Q9UKV3 1341 aaKnown RBP15.2■□□□□ 0.02
COPB1-201ENST00000249923 ARHGAP35Q9NRY4 1499 aa15.2■□□□□ 0.02
COPB1-201ENST00000249923 ZNF316A6NFI3 1004 aaPredicted RBP15.19■□□□□ 0.02
COPB1-201ENST00000249923 GTF3C3Q9Y5Q9 886 aa15.17■□□□□ 0.02
COPB1-201ENST00000249923 APLP2Q06481 763 aa15.14■□□□□ 0.01
COPB1-201ENST00000249923 IGF1RP08069 1367 aa15.14■□□□□ 0.01
COPB1-201ENST00000249923 CUX2O14529 1486 aa15.12■□□□□ 0.01
COPB1-201ENST00000249923 DHX57Q6P158 1386 aaKnown RBP15.12■□□□□ 0.01
COPB1-201ENST00000249923 RRBP1Q9P2E9 1410 aaKnown RBP15.12■□□□□ 0.01
COPB1-201ENST00000249923 CADPSQ9ULU8 1353 aa15.12■□□□□ 0.01
COPB1-201ENST00000249923 FGD5Q6ZNL6 1462 aa15.11■□□□□ 0.01
COPB1-201ENST00000249923 CENPBP07199 599 aaPredicted RBP15.09■□□□□ 0.01
COPB1-201ENST00000249923 CC2D2AQ9P2K1 1620 aa15.09■□□□□ 0.01
COPB1-201ENST00000249923 MIER1Q8N108 512 aa15.06■□□□□ 0
COPB1-201ENST00000249923 TIAM1Q13009 1591 aa15.01□□□□□ -0.01
COPB1-201ENST00000249923 CARMIL1Q5VZK9 1371 aa15.01□□□□□ -0.01
COPB1-201ENST00000249923 CCNB3Q8WWL7 1395 aa15□□□□□ -0.01
COPB1-201ENST00000249923 FANCD2Q9BXW9 1451 aa15□□□□□ -0.01
COPB1-201ENST00000249923 RAD54L2Q9Y4B4 1467 aa14.98□□□□□ -0.01
COPB1-201ENST00000249923 NESP48681 1621 aa14.98□□□□□ -0.01
COPB1-201ENST00000249923 CLSPNQ9HAW4 1339 aa14.96□□□□□ -0.02
COPB1-201ENST00000249923 PCF11O94913 1555 aaKnown RBP14.95□□□□□ -0.02
COPB1-201ENST00000249923 MAP3K1Q13233 1512 aa14.95□□□□□ -0.02
COPB1-201ENST00000249923 MAPKBP1O60336 1514 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms