RNA–Protein interactions for RNA: ENST00000557364.5

CHD8-213, Transcript of chromodomain helicase DNA binding protein 8, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD8, Length 8,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8-213ENST00000557364 DCAF8L2P0C7V8 631 aa14.44□□□□□ -0.1
CHD8-213ENST00000557364 NISCHQ9Y2I1 1504 aa13.93□□□□□ -0.18
CHD8-213ENST00000557364 FAM9AQ8IZU1 332 aaPredicted RBP13.6□□□□□ -0.23
CHD8-213ENST00000557364 SUPT5HO00267 1087 aaKnown RBP13.38□□□□□ -0.27
CHD8-213ENST00000557364 APLP2Q06481 763 aa13.29□□□□□ -0.28
CHD8-213ENST00000557364 PELP1Q8IZL8 1130 aaKnown RBP13.17□□□□□ -0.3
CHD8-213ENST00000557364 SHROOM4Q9ULL8 1493 aa13.11□□□□□ -0.31
CHD8-213ENST00000557364 EHMT2Q96KQ7 1210 aa12.74□□□□□ -0.37
CHD8-213ENST00000557364 TRIM41Q8WV44 630 aa12.63□□□□□ -0.39
CHD8-213ENST00000557364 ATP1B4Q9UN42 357 aaPredicted RBP12.61□□□□□ -0.39
CHD8-213ENST00000557364 CCER1Q8TC90 406 aaPredicted RBP12.58□□□□□ -0.4
CHD8-213ENST00000557364 ZEB1P37275 1124 aaPredicted RBP12.57□□□□□ -0.4
CHD8-213ENST00000557364 UBTFP17480 764 aaKnown RBP12.55□□□□□ -0.4
CHD8-213ENST00000557364 RANGAP1P46060 587 aaPredicted RBP12.44□□□□□ -0.42
CHD8-213ENST00000557364 CENPBP07199 599 aaPredicted RBP12.4□□□□□ -0.42
CHD8-213ENST00000557364 MYT1LQ9UL68 1186 aa12.39□□□□□ -0.43
CHD8-213ENST00000557364 PCGF6Q9BYE7 350 aa12.34□□□□□ -0.43
CHD8-213ENST00000557364 TTBK1Q5TCY1 1321 aaPredicted RBP12.34□□□□□ -0.43
CHD8-213ENST00000557364 ERICH6Q7L0X2 663 aa12.32□□□□□ -0.44
CHD8-213ENST00000557364 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.31□□□□□ -0.44
CHD8-213ENST00000557364 HNRNPUL2Q1KMD3 747 aaKnown RBP12.31□□□□□ -0.44
CHD8-213ENST00000557364 NEFLP07196 543 aa12.3□□□□□ -0.44
CHD8-213ENST00000557364 ABCC9O60706 1549 aa12.1□□□□□ -0.47
CHD8-213ENST00000557364 DAXXQ9UER7 740 aaPredicted RBP12.03□□□□□ -0.48
CHD8-213ENST00000557364 TRIM26Q12899 539 aaPredicted RBP11.99□□□□□ -0.49
CHD8-213ENST00000557364 SLC4A1APQ9BWU0 796 aaKnown RBP11.94□□□□□ -0.5
CHD8-213ENST00000557364 ITGAEP38570 1179 aa11.93□□□□□ -0.5
CHD8-213ENST00000557364 POLR3GLQ9BT43 218 aa11.92□□□□□ -0.5
CHD8-213ENST00000557364 PABPN1Q86U42 306 aaKnown RBP eCLIP11.89□□□□□ -0.51
CHD8-213ENST00000557364 CHIC1Q5VXU3 224 aa11.88□□□□□ -0.51
CHD8-213ENST00000557364 YTHDC1Q96MU7 727 aaKnown RBP11.87□□□□□ -0.51
CHD8-213ENST00000557364 CDK11AQ9UQ88 783 aaPredicted RBP11.85□□□□□ -0.51
CHD8-213ENST00000557364 FBLN2P98095 1184 aa11.84□□□□□ -0.51
CHD8-213ENST00000557364 CCDC180Q9P1Z9 1646 aa11.83□□□□□ -0.52
CHD8-213ENST00000557364 ESF1Q9H501 851 aaKnown RBP11.83□□□□□ -0.52
CHD8-213ENST00000557364 MYT1Q01538 1121 aa11.82□□□□□ -0.52
CHD8-213ENST00000557364 FAM50AQ14320 339 aaKnown RBP11.81□□□□□ -0.52
CHD8-213ENST00000557364 NEFMP07197 916 aa11.8□□□□□ -0.52
CHD8-213ENST00000557364 TRIM52Q96A61 297 aa11.8□□□□□ -0.52
CHD8-213ENST00000557364 NPM1P06748 294 aaKnown RBP eCLIP11.79□□□□□ -0.52
CHD8-213ENST00000557364 ZBTB47Q9UFB7 747 aaPredicted RBP11.77□□□□□ -0.52
CHD8-213ENST00000557364 BCANQ96GW7 911 aa11.73□□□□□ -0.53
CHD8-213ENST00000557364 PPARGC1BQ86YN6 1023 aaKnown RBP11.72□□□□□ -0.53
CHD8-213ENST00000557364 CLSPNQ9HAW4 1339 aa11.71□□□□□ -0.53
CHD8-213ENST00000557364 ZNF316A6NFI3 1004 aaPredicted RBP11.67□□□□□ -0.54
CHD8-213ENST00000557364 RB1CC1Q8TDY2 1594 aa11.66□□□□□ -0.54
CHD8-213ENST00000557364 SCRIBQ14160 1630 aa11.63□□□□□ -0.55
CHD8-213ENST00000557364 ACIN1Q9UKV3 1341 aaKnown RBP11.61□□□□□ -0.55
CHD8-213ENST00000557364 STAG3Q9UJ98 1225 aa11.6□□□□□ -0.55
CHD8-213ENST00000557364 HRCP23327 699 aa11.57□□□□□ -0.56
CHD8-213ENST00000557364 ANP32CO43423 234 aa11.57□□□□□ -0.56
CHD8-213ENST00000557364 CNGB1Q14028 1251 aaPredicted RBP11.55□□□□□ -0.56
CHD8-213ENST00000557364 LOC105371045A0A1W2PR82 267 aa11.54□□□□□ -0.56
CHD8-213ENST00000557364 SLC24A1O60721 1099 aa11.54□□□□□ -0.56
CHD8-213ENST00000557364 ZNF326Q5BKZ1 582 aaKnown RBP11.54□□□□□ -0.56
CHD8-213ENST00000557364 RTL5Q5HYW3 569 aaPredicted RBP11.54□□□□□ -0.56
CHD8-213ENST00000557364 CSRNP3Q8WYN3 585 aa11.53□□□□□ -0.56
CHD8-213ENST00000557364 CANXP27824 592 aaKnown RBP11.53□□□□□ -0.56
CHD8-213ENST00000557364 NEUROD1Q13562 356 aa11.51□□□□□ -0.57
CHD8-213ENST00000557364 NACADO15069 1562 aa11.5□□□□□ -0.57
CHD8-213ENST00000557364 ZNF777Q9ULD5 760 aaPredicted RBP11.5□□□□□ -0.57
CHD8-213ENST00000557364 ZCCHC6Q5VYS8 1495 aaKnown RBP11.47□□□□□ -0.57
CHD8-213ENST00000557364 CHMP7Q8WUX9 453 aaPredicted RBP11.46□□□□□ -0.57
CHD8-213ENST00000557364 DIEXFQ68CQ4 756 aaKnown RBP11.44□□□□□ -0.58
CHD8-213ENST00000557364 TSPY4P0CV99 314 aa11.43□□□□□ -0.58
CHD8-213ENST00000557364 TSPY10P0CW01 314 aa11.43□□□□□ -0.58
CHD8-213ENST00000557364 P3H3Q8IVL6 736 aa11.4□□□□□ -0.58
CHD8-213ENST00000557364 CHGAP10645 457 aaKnown RBP11.39□□□□□ -0.59
CHD8-213ENST00000557364 TONSLQ96HA7 1378 aa11.38□□□□□ -0.59
CHD8-213ENST00000557364 NPM2Q86SE8 214 aaKnown RBP11.36□□□□□ -0.59
CHD8-213ENST00000557364 RSF1Q96T23 1441 aaPredicted RBP11.36□□□□□ -0.59
CHD8-213ENST00000557364 ARID3CA6NKF2 412 aa11.34□□□□□ -0.59
CHD8-213ENST00000557364 ERCC6Q03468 1493 aa11.34□□□□□ -0.59
CHD8-213ENST00000557364 EEA1Q15075 1411 aa11.33□□□□□ -0.6
CHD8-213ENST00000557364 MTUS2Q5JR59 1369 aa11.33□□□□□ -0.6
CHD8-213ENST00000557364 BAZ1BQ9UIG0 1483 aaKnown RBP11.3□□□□□ -0.6
CHD8-213ENST00000557364 PLEKHD1A6NEE1 506 aa11.29□□□□□ -0.6
CHD8-213ENST00000557364 PPP1R15AO75807 674 aaPredicted RBP11.28□□□□□ -0.6
CHD8-213ENST00000557364 UPF2Q9HAU5 1272 aaKnown RBP11.28□□□□□ -0.6
CHD8-213ENST00000557364 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.28□□□□□ -0.6
CHD8-213ENST00000557364 PLPPR3Q6T4P5 718 aa11.26□□□□□ -0.61
CHD8-213ENST00000557364 ANP32BQ92688 251 aaKnown RBP11.24□□□□□ -0.61
CHD8-213ENST00000557364 CDCA8Q53HL2 280 aa11.24□□□□□ -0.61
CHD8-213ENST00000557364 C14orf37Q86TY3 774 aa11.23□□□□□ -0.61
CHD8-213ENST00000557364 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.23□□□□□ -0.611e-6■■■□□ 19
CHD8-213ENST00000557364 EIF5BO60841 1220 aaKnown RBP11.22□□□□□ -0.61
CHD8-213ENST00000557364 ARID4BQ4LE39 1312 aaPredicted RBP11.21□□□□□ -0.61
CHD8-213ENST00000557364 KIF27Q86VH2 1401 aa11.21□□□□□ -0.62
CHD8-213ENST00000557364 ANP32AP39687 249 aaKnown RBP11.21□□□□□ -0.62
CHD8-213ENST00000557364 WDR43Q15061 677 aaKnown RBP eCLIP11.21□□□□□ -0.627e-11■■□□□ 11.5
CHD8-213ENST00000557364 SCAF1Q9H7N4 1312 aaKnown RBP11.21□□□□□ -0.62
CHD8-213ENST00000557364 HDGFP51858 240 aaKnown RBP11.2□□□□□ -0.62
CHD8-213ENST00000557364 HSP90AA1P07900 732 aaKnown RBP11.2□□□□□ -0.62
CHD8-213ENST00000557364 MYH16Q9H6N6 1097 aa11.2□□□□□ -0.62
CHD8-213ENST00000557364 HAP1P54257 671 aaPredicted RBP11.19□□□□□ -0.62
CHD8-213ENST00000557364 BAZ1AQ9NRL2 1556 aaPredicted RBP11.19□□□□□ -0.62
CHD8-213ENST00000557364 GOLGA3Q08378 1498 aa11.16□□□□□ -0.62
CHD8-213ENST00000557364 CLIP1P30622 1438 aa11.15□□□□□ -0.62
CHD8-213ENST00000557364 TMC1Q8TDI8 760 aa11.15□□□□□ -0.62
CHD8-213ENST00000557364 BCL11AQ9H165 835 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms