RNA–Protein interactions for RNA: ENST00000081029.7

MRPS35-201, Transcript of mitochondrial ribosomal protein S35, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MRPS35, Length 1,888 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPS35-201ENST00000081029 NISCHQ9Y2I1 1504 aa25.14■■□□□ 1.62
MRPS35-201ENST00000081029 CCDC180Q9P1Z9 1646 aa22.21■■□□□ 1.15
MRPS35-201ENST00000081029 ABCC9O60706 1549 aa21.81■■□□□ 1.08
MRPS35-201ENST00000081029 DCAF8L2P0C7V8 631 aa21.25■□□□□ 0.99
MRPS35-201ENST00000081029 ZCCHC6Q5VYS8 1495 aaKnown RBP20.93■□□□□ 0.94
MRPS35-201ENST00000081029 RB1CC1Q8TDY2 1594 aa20.92■□□□□ 0.94
MRPS35-201ENST00000081029 NACADO15069 1562 aa20.9■□□□□ 0.94
MRPS35-201ENST00000081029 MYO15BQ96JP2 1530 aa20.73■□□□□ 0.91
MRPS35-201ENST00000081029 DCAF1Q9Y4B6 1507 aa20.71■□□□□ 0.91
MRPS35-201ENST00000081029 PABPN1Q86U42 306 aaKnown RBP eCLIP20.48■□□□□ 0.87
MRPS35-201ENST00000081029 UNC13AQ9UPW8 1703 aa20.43■□□□□ 0.86
MRPS35-201ENST00000081029 SCRIBQ14160 1630 aa20.41■□□□□ 0.86
MRPS35-201ENST00000081029 BICRAQ9NZM4 1560 aa20.26■□□□□ 0.83
MRPS35-201ENST00000081029 SHROOM4Q9ULL8 1493 aa20.14■□□□□ 0.81
MRPS35-201ENST00000081029 DNAJC5BQ9UF47 199 aa19.94■□□□□ 0.78
MRPS35-201ENST00000081029 EIF4G1Q04637 1599 aaKnown RBP19.75■□□□□ 0.75
MRPS35-201ENST00000081029 CC2D2AQ9P2K1 1620 aa19.66■□□□□ 0.74
MRPS35-201ENST00000081029 CECR2Q9BXF3 1484 aa19.63■□□□□ 0.73
MRPS35-201ENST00000081029 SMARCA4P51532 1647 aa19.47■□□□□ 0.71
MRPS35-201ENST00000081029 BAZ1AQ9NRL2 1556 aaPredicted RBP19.46■□□□□ 0.71
MRPS35-201ENST00000081029 MROH2BQ7Z745 1585 aa19.41■□□□□ 0.7
MRPS35-201ENST00000081029 ATAD2BQ9ULI0 1458 aa19.36■□□□□ 0.69
MRPS35-201ENST00000081029 SMARCA2P51531 1590 aa19.32■□□□□ 0.68
MRPS35-201ENST00000081029 NCAPD3P42695 1498 aa19.3■□□□□ 0.68
MRPS35-201ENST00000081029 RSF1Q96T23 1441 aaPredicted RBP19.24■□□□□ 0.67
MRPS35-201ENST00000081029 BAZ1BQ9UIG0 1483 aaKnown RBP19.23■□□□□ 0.67
MRPS35-201ENST00000081029 WIZO95785 1651 aa19.22■□□□□ 0.67
MRPS35-201ENST00000081029 PEG3Q9GZU2 1588 aa19.21■□□□□ 0.67
MRPS35-201ENST00000081029 HMGXB3Q12766 1538 aa19.18■□□□□ 0.66
MRPS35-201ENST00000081029 SUPT5HO00267 1087 aaKnown RBP19.05■□□□□ 0.64
MRPS35-201ENST00000081029 TOP2AP11388 1531 aaKnown RBP18.96■□□□□ 0.63
MRPS35-201ENST00000081029 NESP48681 1621 aa18.89■□□□□ 0.61
MRPS35-201ENST00000081029 CCDC88BA6NC98 1476 aa18.8■□□□□ 0.6
MRPS35-201ENST00000081029 CADPSQ9ULU8 1353 aa18.8■□□□□ 0.6
MRPS35-201ENST00000081029 ERCC6Q03468 1493 aa18.79■□□□□ 0.6
MRPS35-201ENST00000081029 LAMC3Q9Y6N6 1575 aa18.76■□□□□ 0.59
MRPS35-201ENST00000081029 PDS5BQ9NTI5 1447 aa18.7■□□□□ 0.58
MRPS35-201ENST00000081029 CFTRP13569 1480 aa18.67■□□□□ 0.58
MRPS35-201ENST00000081029 KIF21AQ7Z4S6 1674 aa18.61■□□□□ 0.57
MRPS35-201ENST00000081029 FANCD2Q9BXW9 1451 aa18.59■□□□□ 0.57
MRPS35-201ENST00000081029 CEP164Q9UPV0 1460 aa18.54■□□□□ 0.56
MRPS35-201ENST00000081029 MRC2Q9UBG0 1479 aa18.47■□□□□ 0.55
MRPS35-201ENST00000081029 PRDM2Q13029 1718 aa18.47■□□□□ 0.55
MRPS35-201ENST00000081029 THOC2Q8NI27 1593 aaKnown RBP18.46■□□□□ 0.55
MRPS35-201ENST00000081029 CUX2O14529 1486 aa18.43■□□□□ 0.54
MRPS35-201ENST00000081029 URB2Q14146 1524 aaKnown RBP18.37■□□□□ 0.53
MRPS35-201ENST00000081029 WDR62O43379 1518 aa18.36■□□□□ 0.53
MRPS35-201ENST00000081029 TOPBP1Q92547 1522 aa18.28■□□□□ 0.52
MRPS35-201ENST00000081029 ABCC8Q09428 1581 aa18.26■□□□□ 0.51
MRPS35-201ENST00000081029 DNMBPQ6XZF7 1577 aa18.24■□□□□ 0.51
MRPS35-201ENST00000081029 CUX1P39880 1505 aa18.19■□□□□ 0.5
MRPS35-201ENST00000081029 WRNQ14191 1432 aaPredicted RBP eCLIP18.15■□□□□ 0.5
MRPS35-201ENST00000081029 POLA1P09884 1462 aaPredicted RBP18.14■□□□□ 0.49
MRPS35-201ENST00000081029 FGD5Q6ZNL6 1462 aa18.13■□□□□ 0.49
MRPS35-201ENST00000081029 IFT140Q96RY7 1462 aa18.13■□□□□ 0.49
MRPS35-201ENST00000081029 SOGA1O94964 1423 aa18.12■□□□□ 0.49
MRPS35-201ENST00000081029 RAD54L2Q9Y4B4 1467 aa18.12■□□□□ 0.49
MRPS35-201ENST00000081029 ZNF608Q9ULD9 1512 aaPredicted RBP18.09■□□□□ 0.49
MRPS35-201ENST00000081029 SYNJ1O43426 1573 aa18.07■□□□□ 0.48
MRPS35-201ENST00000081029 TDRD9Q8NDG6 1382 aaKnown RBP18.05■□□□□ 0.48
MRPS35-201ENST00000081029 AQRO60306 1485 aaKnown RBP eCLIP18.03■□□□□ 0.481e-6■■■□□ 14.7
MRPS35-201ENST00000081029 TOP2BQ02880 1626 aa18.03■□□□□ 0.48
MRPS35-201ENST00000081029 TARBP1Q13395 1621 aaKnown RBP18.03■□□□□ 0.48
MRPS35-201ENST00000081029 BIVM-ERCC5R4GMW8 1640 aa18■□□□□ 0.47
MRPS35-201ENST00000081029 EIF4G3O43432 1585 aaKnown RBP17.96■□□□□ 0.47
MRPS35-201ENST00000081029 TRIM41Q8WV44 630 aa17.93■□□□□ 0.46
MRPS35-201ENST00000081029 FBLN2P98095 1184 aa17.92■□□□□ 0.46
MRPS35-201ENST00000081029 ABCA10Q8WWZ4 1543 aa17.91■□□□□ 0.46
MRPS35-201ENST00000081029 GAPVD1Q14C86 1478 aa17.89■□□□□ 0.45
MRPS35-201ENST00000081029 WDR97A6NE52 1622 aa17.87■□□□□ 0.45
MRPS35-201ENST00000081029 GRIN2BQ13224 1484 aa17.85■□□□□ 0.45
MRPS35-201ENST00000081029 DNAJC5Q9H3Z4 198 aa17.84■□□□□ 0.45
MRPS35-201ENST00000081029 OSCARQ8IYS5 282 aa17.84■□□□□ 0.45
MRPS35-201ENST00000081029 CHMP7Q8WUX9 453 aaPredicted RBP17.82■□□□□ 0.44
MRPS35-201ENST00000081029 SNAPC4Q5SXM2 1469 aa17.82■□□□□ 0.44
MRPS35-201ENST00000081029 ABCA5Q8WWZ7 1642 aa17.8■□□□□ 0.44
MRPS35-201ENST00000081029 PBRM1Q86U86 1689 aa17.78■□□□□ 0.44
MRPS35-201ENST00000081029 KIF27Q86VH2 1401 aa17.77■□□□□ 0.43
MRPS35-201ENST00000081029 MAGI1Q96QZ7 1491 aaPredicted RBP17.76■□□□□ 0.43
MRPS35-201ENST00000081029 CHIC1Q5VXU3 224 aa17.75■□□□□ 0.43
MRPS35-201ENST00000081029 CHD1O14646 1710 aa17.73■□□□□ 0.43
MRPS35-201ENST00000081029 SYNJ2O15056 1496 aa17.71■□□□□ 0.43
MRPS35-201ENST00000081029 ERICH3Q5RHP9 1530 aa17.69■□□□□ 0.42
MRPS35-201ENST00000081029 IGF1RP08069 1367 aa17.69■□□□□ 0.42
MRPS35-201ENST00000081029 RUSC2Q8N2Y8 1516 aa17.68■□□□□ 0.42
MRPS35-201ENST00000081029 FHAD1B1AJZ9 1412 aa17.66■□□□□ 0.42
MRPS35-201ENST00000081029 ADAMTS12P58397 1594 aa17.64■□□□□ 0.41
MRPS35-201ENST00000081029 FAM9AQ8IZU1 332 aaPredicted RBP17.63■□□□□ 0.41
MRPS35-201ENST00000081029 GRIN2AQ12879 1464 aa17.61■□□□□ 0.41
MRPS35-201ENST00000081029 CARMIL1Q5VZK9 1371 aa17.6■□□□□ 0.41
MRPS35-201ENST00000081029 CUL7Q14999 1698 aa17.55■□□□□ 0.4
MRPS35-201ENST00000081029 CSRNP3Q8WYN3 585 aa17.53■□□□□ 0.4
MRPS35-201ENST00000081029 CEP170Q5SW79 1584 aa17.51■□□□□ 0.39
MRPS35-201ENST00000081029 NUP160Q12769 1436 aa17.49■□□□□ 0.39
MRPS35-201ENST00000081029 CLASP1Q7Z460 1538 aa17.49■□□□□ 0.39
MRPS35-201ENST00000081029 EHMT2Q96KQ7 1210 aa17.48■□□□□ 0.39
MRPS35-201ENST00000081029 RAPGEF2Q9Y4G8 1499 aa17.48■□□□□ 0.39
MRPS35-201ENST00000081029 ARHGEF11O15085 1522 aa17.45■□□□□ 0.38
MRPS35-201ENST00000081029 JPH4Q96JJ6 628 aa17.45■□□□□ 0.38
MRPS35-201ENST00000081029 EEA1Q15075 1411 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms