RNA–Protein interactions for RNA: ENST00000370361.5

VMA21-202, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

TSL 5 BASIC

Gene VMA21, Length 693 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-202ENST00000370361 NISCHQ9Y2I1 1504 aa40.16■■■■■ 4.02
VMA21-202ENST00000370361 CCDC180Q9P1Z9 1646 aa36.07■■■■□ 3.36
VMA21-202ENST00000370361 ABCC9O60706 1549 aa35.65■■■■□ 3.3
VMA21-202ENST00000370361 RB1CC1Q8TDY2 1594 aa34.2■■■■□ 3.07
VMA21-202ENST00000370361 NACADO15069 1562 aa34.05■■■■□ 3.04
VMA21-202ENST00000370361 MYO15BQ96JP2 1530 aa33.73■■■□□ 2.99
VMA21-202ENST00000370361 DCAF8L2P0C7V8 631 aa33.64■■■□□ 2.98
VMA21-202ENST00000370361 ZCCHC6Q5VYS8 1495 aaKnown RBP33.35■■■□□ 2.93
VMA21-202ENST00000370361 DCAF1Q9Y4B6 1507 aa33.33■■■□□ 2.93
VMA21-202ENST00000370361 UNC13AQ9UPW8 1703 aa33.3■■■□□ 2.92
VMA21-202ENST00000370361 DNAJC5BQ9UF47 199 aa33.16■■■□□ 2.9
VMA21-202ENST00000370361 PABPN1Q86U42 306 aaKnown RBP eCLIP33.15■■■□□ 2.9
VMA21-202ENST00000370361 BICRAQ9NZM4 1560 aa33.08■■■□□ 2.89
VMA21-202ENST00000370361 SHROOM4Q9ULL8 1493 aa32.93■■■□□ 2.86
VMA21-202ENST00000370361 SCRIBQ14160 1630 aa32.69■■■□□ 2.82
VMA21-202ENST00000370361 EIF4G1Q04637 1599 aaKnown RBP32.3■■■□□ 2.76
VMA21-202ENST00000370361 CC2D2AQ9P2K1 1620 aa32.29■■■□□ 2.76
VMA21-202ENST00000370361 CECR2Q9BXF3 1484 aa32.17■■■□□ 2.74
VMA21-202ENST00000370361 NCAPD3P42695 1498 aa31.39■■■□□ 2.62
VMA21-202ENST00000370361 SMARCA4P51532 1647 aa31.28■■■□□ 2.6
VMA21-202ENST00000370361 SMARCA2P51531 1590 aa31.28■■■□□ 2.6
VMA21-202ENST00000370361 ATAD2BQ9ULI0 1458 aa31.26■■■□□ 2.59
VMA21-202ENST00000370361 BAZ1AQ9NRL2 1556 aaPredicted RBP31.22■■■□□ 2.59
VMA21-202ENST00000370361 HMGXB3Q12766 1538 aa31.21■■■□□ 2.59
VMA21-202ENST00000370361 PEG3Q9GZU2 1588 aa31.07■■■□□ 2.56
VMA21-202ENST00000370361 BAZ1BQ9UIG0 1483 aaKnown RBP31■■■□□ 2.55
VMA21-202ENST00000370361 ERCC6Q03468 1493 aa30.88■■■□□ 2.53
VMA21-202ENST00000370361 MROH2BQ7Z745 1585 aa30.86■■■□□ 2.53
VMA21-202ENST00000370361 CUX2O14529 1486 aa30.85■■■□□ 2.53
VMA21-202ENST00000370361 LAMC3Q9Y6N6 1575 aa30.68■■■□□ 2.5
VMA21-202ENST00000370361 NESP48681 1621 aa30.65■■■□□ 2.5
VMA21-202ENST00000370361 PDS5BQ9NTI5 1447 aa30.49■■■□□ 2.47
VMA21-202ENST00000370361 DNAJC5Q9H3Z4 198 aa30.49■■■□□ 2.47
VMA21-202ENST00000370361 WIZO95785 1651 aa30.49■■■□□ 2.47
VMA21-202ENST00000370361 THOC2Q8NI27 1593 aaKnown RBP30.42■■■□□ 2.46
VMA21-202ENST00000370361 CADPSQ9ULU8 1353 aa30.41■■■□□ 2.46
VMA21-202ENST00000370361 RSF1Q96T23 1441 aaPredicted RBP30.33■■■□□ 2.45
VMA21-202ENST00000370361 KIF21AQ7Z4S6 1674 aa30.33■■■□□ 2.45
VMA21-202ENST00000370361 TOP2AP11388 1531 aaKnown RBP30.23■■■□□ 2.43
VMA21-202ENST00000370361 MRC2Q9UBG0 1479 aa30.17■■■□□ 2.42
VMA21-202ENST00000370361 CFTRP13569 1480 aa30.12■■■□□ 2.41
VMA21-202ENST00000370361 WDR62O43379 1518 aa30.1■■■□□ 2.41
VMA21-202ENST00000370361 CEP164Q9UPV0 1460 aa30.09■■■□□ 2.41
VMA21-202ENST00000370361 FANCD2Q9BXW9 1451 aa30.04■■■□□ 2.4
VMA21-202ENST00000370361 PRDM2Q13029 1718 aa29.88■■■□□ 2.37
VMA21-202ENST00000370361 CCDC88BA6NC98 1476 aa29.8■■■□□ 2.36
VMA21-202ENST00000370361 URB2Q14146 1524 aaKnown RBP29.73■■■□□ 2.35
VMA21-202ENST00000370361 ABCC8Q09428 1581 aa29.6■■■□□ 2.33
VMA21-202ENST00000370361 IFT140Q96RY7 1462 aa29.51■■■□□ 2.31
VMA21-202ENST00000370361 TOPBP1Q92547 1522 aa29.49■■■□□ 2.31
VMA21-202ENST00000370361 DNMBPQ6XZF7 1577 aa29.44■■■□□ 2.3
VMA21-202ENST00000370361 OSCARQ8IYS5 282 aa29.39■■■□□ 2.3
VMA21-202ENST00000370361 ZNF608Q9ULD9 1512 aaPredicted RBP29.29■■■□□ 2.28
VMA21-202ENST00000370361 EIF4G3O43432 1585 aaKnown RBP29.22■■■□□ 2.27
VMA21-202ENST00000370361 TARBP1Q13395 1621 aaKnown RBP29.21■■■□□ 2.27
VMA21-202ENST00000370361 POLA1P09884 1462 aaPredicted RBP29.19■■■□□ 2.26
VMA21-202ENST00000370361 WDR97A6NE52 1622 aa29.12■■■□□ 2.25
VMA21-202ENST00000370361 TRIM41Q8WV44 630 aa29.11■■■□□ 2.25
VMA21-202ENST00000370361 SOGA1O94964 1423 aa29.07■■■□□ 2.24
VMA21-202ENST00000370361 AQRO60306 1485 aaKnown RBP eCLIP29.05■■■□□ 2.24
VMA21-202ENST00000370361 FGD5Q6ZNL6 1462 aa29.03■■■□□ 2.24
VMA21-202ENST00000370361 CUX1P39880 1505 aa29■■■□□ 2.23
VMA21-202ENST00000370361 SUPT5HO00267 1087 aaKnown RBP29■■■□□ 2.23
VMA21-202ENST00000370361 RAD54L2Q9Y4B4 1467 aa28.99■■■□□ 2.23
VMA21-202ENST00000370361 CHD1O14646 1710 aa28.94■■■□□ 2.22
VMA21-202ENST00000370361 RIMBP3CA6NJZ7 1639 aa28.93■■■□□ 2.22
VMA21-202ENST00000370361 RIMBP3BA6NNM3 1639 aa28.93■■■□□ 2.22
VMA21-202ENST00000370361 RIMBP3Q9UFD9 1639 aa28.93■■■□□ 2.22
VMA21-202ENST00000370361 TDRD9Q8NDG6 1382 aaKnown RBP28.9■■■□□ 2.22
VMA21-202ENST00000370361 ARHGEF11O15085 1522 aa28.89■■■□□ 2.21
VMA21-202ENST00000370361 MAGI1Q96QZ7 1491 aaPredicted RBP28.87■■■□□ 2.21
VMA21-202ENST00000370361 GRIN2BQ13224 1484 aa28.85■■■□□ 2.21
VMA21-202ENST00000370361 SNAPC4Q5SXM2 1469 aa28.82■■■□□ 2.2
VMA21-202ENST00000370361 FBLN2P98095 1184 aa28.81■■■□□ 2.2
VMA21-202ENST00000370361 ABCA10Q8WWZ4 1543 aa28.78■■■□□ 2.2
VMA21-202ENST00000370361 GAPVD1Q14C86 1478 aa28.74■■■□□ 2.19
VMA21-202ENST00000370361 SYNJ2O15056 1496 aa28.73■■■□□ 2.19
VMA21-202ENST00000370361 SYNJ1O43426 1573 aa28.72■■■□□ 2.19
VMA21-202ENST00000370361 CHMP7Q8WUX9 453 aaPredicted RBP28.72■■■□□ 2.19
VMA21-202ENST00000370361 WRNQ14191 1432 aaPredicted RBP eCLIP28.71■■■□□ 2.19
VMA21-202ENST00000370361 PBRM1Q86U86 1689 aa28.7■■■□□ 2.18
VMA21-202ENST00000370361 ABCA5Q8WWZ7 1642 aa28.69■■■□□ 2.18
VMA21-202ENST00000370361 BIVM-ERCC5R4GMW8 1640 aa28.68■■■□□ 2.18
VMA21-202ENST00000370361 TOP2BQ02880 1626 aa28.67■■■□□ 2.18
VMA21-202ENST00000370361 CLASP1Q7Z460 1538 aa28.67■■■□□ 2.18
VMA21-202ENST00000370361 CYB5RLQ6IPT4 315 aa28.59■■■□□ 2.17
VMA21-202ENST00000370361 ARAP1Q96P48 1450 aa28.59■■■□□ 2.17
VMA21-202ENST00000370361 ERICH3Q5RHP9 1530 aa28.46■■■□□ 2.15
VMA21-202ENST00000370361 ADAMTS12P58397 1594 aa28.45■■■□□ 2.15
VMA21-202ENST00000370361 GRIN2AQ12879 1464 aa28.45■■■□□ 2.14
VMA21-202ENST00000370361 FHAD1B1AJZ9 1412 aa28.42■■■□□ 2.14
VMA21-202ENST00000370361 NUP160Q12769 1436 aa28.36■■■□□ 2.13
VMA21-202ENST00000370361 CEP170Q5SW79 1584 aa28.28■■■□□ 2.12
VMA21-202ENST00000370361 SHROOM2Q13796 1616 aa28.22■■■□□ 2.11
VMA21-202ENST00000370361 TRHP20396 242 aaPredicted RBP28.21■■■□□ 2.11
VMA21-202ENST00000370361 KIF27Q86VH2 1401 aa28.14■■■□□ 2.1
VMA21-202ENST00000370361 CUL7Q14999 1698 aa28.09■■■□□ 2.09
VMA21-202ENST00000370361 ERCC6L2Q5T890 1561 aa28.08■■■□□ 2.09
VMA21-202ENST00000370361 RUSC2Q8N2Y8 1516 aa28.05■■■□□ 2.08
VMA21-202ENST00000370361 IGF1RP08069 1367 aa28.03■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 117.5 ms