Protein–RNA interactions for Protein: P23246

SFPQ, Splicing factor, proline- and glutamine-rich, humanhuman

Known RBP eCLIP

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SFPQP23246 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC17.21■□□□□ 0.353e-7■■■□□ 16.1
SFPQP23246 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.273e-7■■■□□ 16.1
SFPQP23246 RANBP3-227ENST00000592266 589 ntTSL 419.35■□□□□ 0.694e-6■■■□□ 16.1
SFPQP23246 RANBP3-222ENST00000591333 557 ntTSL 417.8■□□□□ 0.444e-6■■■□□ 16.1
SFPQP23246 RANBP3-213ENST00000587956 512 ntTSL 515.71■□□□□ 0.114e-6■■■□□ 16.1
SFPQP23246 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC31■■■□□ 2.551e-6■■■□□ 16
SFPQP23246 PCSK6-208ENST00000559417 1035 ntTSL 520.42■□□□□ 0.861e-6■■■□□ 16
SFPQP23246 ATP11A-205ENST00000419448 435 ntTSL 38.86□□□□□ -0.991e-6■■■□□ 16
SFPQP23246 FARP1-202ENST00000376581 1021 ntTSL 2 BASIC9.43□□□□□ -0.94e-7■■■□□ 16
SFPQP23246 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.422e-6■■■□□ 16
SFPQP23246 CHN2-220ENST00000474070 754 ntTSL 510.55□□□□□ -0.722e-6■■■□□ 16
SFPQP23246 CHN2-226ENST00000495789 725 ntTSL 1 (best) BASIC9.84□□□□□ -0.832e-6■■■□□ 16
SFPQP23246 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.161e-8■■■□□ 16
SFPQP23246 SLC16A3-205ENST00000578574 958 ntTSL 226.68■■□□□ 1.861e-8■■■□□ 16
SFPQP23246 SLC16A3-220ENST00000584781 562 ntTSL 425.38■■□□□ 1.651e-8■■■□□ 16
SFPQP23246 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC22.94■■□□□ 1.261e-8■■■□□ 16
SFPQP23246 SLC16A3-208ENST00000579572 863 ntTSL 322.43■■□□□ 1.181e-8■■■□□ 16
SFPQP23246 SLC16A3-206ENST00000578684 866 ntTSL 320.3■□□□□ 0.841e-8■■■□□ 16
SFPQP23246 SLC16A3-217ENST00000583237 808 ntTSL 320.29■□□□□ 0.841e-8■■■□□ 16
SFPQP23246 SLC16A3-212ENST00000581642 557 ntTSL 420.2■□□□□ 0.821e-8■■■□□ 16
SFPQP23246 SLC16A3-219ENST00000584689 1033 ntTSL 220.11■□□□□ 0.811e-8■■■□□ 16
SFPQP23246 SLC16A3-203ENST00000577650 545 ntTSL 319.17■□□□□ 0.661e-8■■■□□ 16
SFPQP23246 SLC16A3-213ENST00000582715 279 ntTSL 517.16■□□□□ 0.341e-8■■■□□ 16
SFPQP23246 SETD5-209ENST00000431285 1824 ntTSL 526.2■■□□□ 1.787e-8■■■□□ 16
SFPQP23246 ATP2A2-203ENST00000377685 5702 ntTSL 525.33■■□□□ 1.647e-8■■■□□ 16
SFPQP23246 SPHK1-206ENST00000590379 588 ntTSL 323.35■■□□□ 1.337e-8■■■□□ 16
SFPQP23246 SETD5-214ENST00000463180 685 ntTSL 222.02■■□□□ 1.127e-8■■■□□ 16
SFPQP23246 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.017e-8■■■□□ 16
SFPQP23246 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.537e-8■■■□□ 16
SFPQP23246 RAB17-211ENST00000487008 558 ntTSL 317.71■□□□□ 0.437e-8■■■□□ 16
SFPQP23246 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.412e-7■■■□□ 16
SFPQP23246 SETD5-212ENST00000450326 921 ntTSL 317.45■□□□□ 0.387e-8■■■□□ 16
SFPQP23246 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC16.81■□□□□ 0.282e-7■■■□□ 16
SFPQP23246 SETD5-207ENST00000415650 579 ntTSL 415.29■□□□□ 0.047e-8■■■□□ 16
SFPQP23246 SETD5-211ENST00000443339 3478 ntTSL 212.3□□□□□ -0.447e-8■■■□□ 16
SFPQP23246 SETD5-203ENST00000402198 6827 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.467e-8■■■□□ 16
SFPQP23246 SETD5-204ENST00000406341 6582 ntAPPRIS P1 TSL 5 BASIC9.17□□□□□ -0.947e-8■■■□□ 16
SFPQP23246 ATP2A2-207ENST00000548169 2951 ntTSL 28.94□□□□□ -0.987e-8■■■□□ 16
SFPQP23246 ATP2A2-209ENST00000550248 544 ntTSL 48.71□□□□□ -1.027e-8■■■□□ 16
SFPQP23246 SETD5-221ENST00000478475 477 ntTSL 48.6□□□□□ -1.037e-8■■■□□ 16
SFPQP23246 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.544e-7■■■□□ 15.9
SFPQP23246 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC26.43■■□□□ 1.827e-7■■■□□ 15.9
SFPQP23246 GNB1-207ENST00000472614 708 ntTSL 225.33■■□□□ 1.657e-7■■■□□ 15.9
SFPQP23246 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC24.05■■□□□ 1.447e-7■■■□□ 15.9
SFPQP23246 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.147e-7■■■□□ 15.9
SFPQP23246 GNB1-204ENST00000439272 602 ntTSL 510.59□□□□□ -0.717e-7■■■□□ 15.9
SFPQP23246 NEDD9-214ENST00000513989 587 ntTSL 411.16□□□□□ -0.623e-6■■■□□ 15.9
SFPQP23246 NEDD9-211ENST00000508546 581 ntTSL 510.58□□□□□ -0.723e-6■■■□□ 15.9
SFPQP23246 NEDD9-203ENST00000397378 470 ntTSL 310.58□□□□□ -0.723e-6■■■□□ 15.9
SFPQP23246 AGO2-205ENST00000519980 3141 ntTSL 1 (best) BASIC14.52□□□□□ -0.094e-6■■■□□ 15.9
SFPQP23246 AGO2-209ENST00000523609 3050 ntTSL 1 (best)13.43□□□□□ -0.264e-6■■■□□ 15.9
SFPQP23246 AGO2-202ENST00000517293 422 ntTSL 37.28□□□□□ -1.244e-6■■■□□ 15.9
SFPQP23246 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.384e-6■■■□□ 15.9
SFPQP23246 RNASET2-209ENST00000499370 2164 ntTSL 212.73□□□□□ -0.371e-14■■■□□ 15.9
SFPQP23246 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC25.97■■□□□ 1.751e-7■■■□□ 15.8
SFPQP23246 GRAMD1A-212ENST00000600231 2534 ntTSL 224.57■■□□□ 1.521e-7■■■□□ 15.8
SFPQP23246 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC19.6■□□□□ 0.731e-7■■■□□ 15.8
SFPQP23246 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.681e-7■■■□□ 15.8
SFPQP23246 GRAMD1A-213ENST00000603669 552 ntTSL 517.1■□□□□ 0.331e-7■■■□□ 15.8
SFPQP23246 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC15.35■□□□□ 0.051e-7■■■□□ 15.8
SFPQP23246 GRAMD1A-204ENST00000594597 567 ntTSL 411.57□□□□□ -0.561e-7■■■□□ 15.8
SFPQP23246 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.543e-8■■■□□ 15.8
SFPQP23246 RRBP1-202ENST00000360807 3727 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.113e-8■■■□□ 15.8
SFPQP23246 RRBP1-206ENST00000455029 2485 ntTSL 1 (best) BASIC15.53■□□□□ 0.083e-8■■■□□ 15.8
SFPQP23246 RRBP1-203ENST00000377807 3792 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.183e-8■■■□□ 15.8
SFPQP23246 SEPT9-218ENST00000587514 540 ntTSL 524.49■■□□□ 1.512e-7■■■□□ 15.8
SFPQP23246 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.481e-6■■■□□ 15.8
SFPQP23246 NEK6-202ENST00000373596 758 ntTSL 314.71□□□□□ -0.052e-6■■■□□ 15.8
SFPQP23246 NEK6-208ENST00000425237 806 ntTSL 312.66□□□□□ -0.382e-6■■■□□ 15.8
SFPQP23246 DIDO1-205ENST00000370371 2833 ntTSL 1 (best) BASIC14.43□□□□□ -0.14e-7■■■□□ 15.8
SFPQP23246 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.081e-6■■■□□ 15.8
SFPQP23246 ERF-203ENST00000593944 555 ntTSL 420.91■□□□□ 0.949e-7■■■□□ 15.7
SFPQP23246 ERF-205ENST00000595941 227 ntTSL 49.07□□□□□ -0.969e-7■■■□□ 15.7
SFPQP23246 GAK-209ENST00000507580 468 ntTSL 423.56■■□□□ 1.361e-6■■■□□ 15.7
SFPQP23246 GAK-219ENST00000512325 577 ntTSL 323.56■■□□□ 1.361e-6■■■□□ 15.7
SFPQP23246 GAK-207ENST00000505819 1326 ntTSL 523.18■■□□□ 1.31e-6■■■□□ 15.7
SFPQP23246 GAK-202ENST00000502656 554 ntTSL 421.58■■□□□ 1.051e-6■■■□□ 15.7
SFPQP23246 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC18.2■□□□□ 0.51e-6■■■□□ 15.7
SFPQP23246 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.341e-6■■■□□ 15.7
SFPQP23246 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC16.99■□□□□ 0.311e-6■■■□□ 15.7
SFPQP23246 GAK-212ENST00000510022 618 ntTSL 411.08□□□□□ -0.641e-6■■■□□ 15.7
SFPQP23246 GAK-215ENST00000511229 568 ntTSL 36.85□□□□□ -1.311e-6■■■□□ 15.7
SFPQP23246 TCF12-222ENST00000561152 675 ntTSL 528.64■■■□□ 2.181e-7■■■□□ 15.7
SFPQP23246 TCF12-208ENST00000557947 575 ntTSL 424.39■■□□□ 1.491e-7■■■□□ 15.7
SFPQP23246 TCF12-210ENST00000558908 553 ntTSL 421.24■□□□□ 0.991e-7■■■□□ 15.7
SFPQP23246 TCF12-215ENST00000560190 1183 ntTSL 1 (best)21.24■□□□□ 0.991e-7■■■□□ 15.7
SFPQP23246 TCF12-201ENST00000267811 6061 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.051e-7■■■□□ 15.7
SFPQP23246 TCF12-212ENST00000559609 2252 ntTSL 214.61□□□□□ -0.071e-7■■■□□ 15.7
SFPQP23246 TCF12-202ENST00000333725 4719 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.181e-7■■■□□ 15.7
SFPQP23246 TCF12-204ENST00000438423 4786 ntAPPRIS P4 TSL 5 BASIC13.68□□□□□ -0.221e-7■■■□□ 15.7
SFPQP23246 TCF12-207ENST00000557843 4076 ntAPPRIS ALT1 TSL 1 (best) BASIC8.75□□□□□ -1.011e-7■■■□□ 15.7
SFPQP23246 MSI2-212ENST00000579590 452 ntTSL 55.37□□□□□ -1.551e-6■■■□□ 15.7
SFPQP23246 DAZAP1-209ENST00000590419 508 ntTSL 316.28■□□□□ 0.24e-7■■■□□ 15.7
SFPQP23246 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC26.72■■□□□ 1.872e-6■■■□□ 15.7
SFPQP23246 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.642e-6■■■□□ 15.7
SFPQP23246 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC25.31■■□□□ 1.642e-6■■■□□ 15.7
SFPQP23246 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.242e-6■■■□□ 15.7
SFPQP23246 ZNRF1-203ENST00000564320 607 ntTSL 39.67□□□□□ -0.862e-6■■■□□ 15.7
SFPQP23246 SKI-204ENST00000508416 252 ntTSL 311.69□□□□□ -0.541e-6■■■□□ 15.7
SFPQP23246 SEPT9-242ENST00000592098 503 ntTSL 414.83□□□□□ -0.046e-7■■■□□ 15.7
Retrieved 100 of 4,991 protein–RNA pairs in 114.7 ms