RNA–Protein interactions for RNA: ENST00000378536.4

SKI-201, Transcript of SKI proto-oncogene, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKI, Length 5,613 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKI-201ENST00000378536 NISCHQ9Y2I1 1504 aa39.18■■■■□ 3.86
SKI-201ENST00000378536 DCAF8L2P0C7V8 631 aa38.25■■■■□ 3.71
SKI-201ENST00000378536 SHROOM4Q9ULL8 1493 aa36■■■■□ 3.35
SKI-201ENST00000378536 SUPT5HO00267 1087 aaKnown RBP35.99■■■■□ 3.35
SKI-201ENST00000378536 EHMT2Q96KQ7 1210 aa34.22■■■■□ 3.07
SKI-201ENST00000378536 FAM9AQ8IZU1 332 aaPredicted RBP33.75■■■□□ 2.99
SKI-201ENST00000378536 ABCC9O60706 1549 aa33.62■■■□□ 2.97
SKI-201ENST00000378536 APLP2Q06481 763 aa33.56■■■□□ 2.96
SKI-201ENST00000378536 TRIM41Q8WV44 630 aa33.54■■■□□ 2.96
SKI-201ENST00000378536 RANGAP1P46060 587 aaPredicted RBP33.05■■■□□ 2.88
SKI-201ENST00000378536 TTBK1Q5TCY1 1321 aaPredicted RBP32.93■■■□□ 2.86
SKI-201ENST00000378536 PABPN1Q86U42 306 aaKnown RBP eCLIP32.92■■■□□ 2.86
SKI-201ENST00000378536 UBTFP17480 764 aaKnown RBP32.91■■■□□ 2.86
SKI-201ENST00000378536 CCDC180Q9P1Z9 1646 aa32.77■■■□□ 2.84
SKI-201ENST00000378536 ATP1B4Q9UN42 357 aaPredicted RBP32.69■■■□□ 2.82
SKI-201ENST00000378536 PCGF6Q9BYE7 350 aa32.65■■■□□ 2.82
SKI-201ENST00000378536 ZCCHC6Q5VYS8 1495 aaKnown RBP32.52■■■□□ 2.8
SKI-201ENST00000378536 CHIC1Q5VXU3 224 aa32.43■■■□□ 2.78
SKI-201ENST00000378536 SCRIBQ14160 1630 aa32.23■■■□□ 2.75
SKI-201ENST00000378536 CCER1Q8TC90 406 aaPredicted RBP32.08■■■□□ 2.73
SKI-201ENST00000378536 LOC105371045A0A1W2PR82 267 aa32.04■■■□□ 2.72
SKI-201ENST00000378536 PPARGC1BQ86YN6 1023 aaKnown RBP32.01■■■□□ 2.71
SKI-201ENST00000378536 ZEB1P37275 1124 aaPredicted RBP32■■■□□ 2.71
SKI-201ENST00000378536 RB1CC1Q8TDY2 1594 aa31.84■■■□□ 2.69
SKI-201ENST00000378536 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.81■■■□□ 2.68
SKI-201ENST00000378536 HNRNPUL2Q1KMD3 747 aaKnown RBP31.81■■■□□ 2.68
SKI-201ENST00000378536 TRIM26Q12899 539 aaPredicted RBP31.76■■■□□ 2.67
SKI-201ENST00000378536 NACADO15069 1562 aa31.63■■■□□ 2.65
SKI-201ENST00000378536 ITGAEP38570 1179 aa31.52■■■□□ 2.64
SKI-201ENST00000378536 PELP1Q8IZL8 1130 aaKnown RBP31.43■■■□□ 2.62
SKI-201ENST00000378536 MYT1LQ9UL68 1186 aa31.41■■■□□ 2.62
SKI-201ENST00000378536 DCAF1Q9Y4B6 1507 aa31.26■■■□□ 2.59
SKI-201ENST00000378536 FBLN2P98095 1184 aa31.25■■■□□ 2.59
SKI-201ENST00000378536 CSRNP3Q8WYN3 585 aa31.19■■■□□ 2.58
SKI-201ENST00000378536 CENPBP07199 599 aaPredicted RBP31.06■■■□□ 2.56
SKI-201ENST00000378536 RSF1Q96T23 1441 aaPredicted RBP31.05■■■□□ 2.56
SKI-201ENST00000378536 FAM50AQ14320 339 aaKnown RBP31.02■■■□□ 2.56
SKI-201ENST00000378536 HRCP23327 699 aa30.9■■■□□ 2.54
SKI-201ENST00000378536 P3H3Q8IVL6 736 aa30.86■■■□□ 2.53
SKI-201ENST00000378536 BAZ1BQ9UIG0 1483 aaKnown RBP30.83■■■□□ 2.53
SKI-201ENST00000378536 BAZ1AQ9NRL2 1556 aaPredicted RBP30.76■■■□□ 2.52
SKI-201ENST00000378536 TRIM52Q96A61 297 aa30.68■■■□□ 2.5
SKI-201ENST00000378536 YTHDC1Q96MU7 727 aaKnown RBP30.67■■■□□ 2.5
SKI-201ENST00000378536 POLR3GLQ9BT43 218 aa30.65■■■□□ 2.5
SKI-201ENST00000378536 CECR2Q9BXF3 1484 aa30.63■■■□□ 2.49
SKI-201ENST00000378536 ARID3CA6NKF2 412 aa30.62■■■□□ 2.49
SKI-201ENST00000378536 MYO15BQ96JP2 1530 aa30.53■■■□□ 2.48
SKI-201ENST00000378536 CDK11AQ9UQ88 783 aaPredicted RBP30.5■■■□□ 2.47
SKI-201ENST00000378536 NEFLP07196 543 aa30.45■■■□□ 2.47
SKI-201ENST00000378536 WRNQ14191 1432 aaPredicted RBP eCLIP30.43■■■□□ 2.463e-6■■■■■ 32.4
SKI-201ENST00000378536 NEUROD1Q13562 356 aa30.39■■■□□ 2.46
SKI-201ENST00000378536 CHMP7Q8WUX9 453 aaPredicted RBP30.33■■■□□ 2.45
SKI-201ENST00000378536 ZNF777Q9ULD5 760 aaPredicted RBP30.32■■■□□ 2.44
SKI-201ENST00000378536 EEA1Q15075 1411 aa30.32■■■□□ 2.44
SKI-201ENST00000378536 MROH2BQ7Z745 1585 aa30.29■■■□□ 2.44
SKI-201ENST00000378536 CNGB1Q14028 1251 aaPredicted RBP30.23■■■□□ 2.43
SKI-201ENST00000378536 SMARCA2P51531 1590 aa30.19■■■□□ 2.42
SKI-201ENST00000378536 SLC4A1APQ9BWU0 796 aaKnown RBP30.16■■■□□ 2.42
SKI-201ENST00000378536 NPM1P06748 294 aaKnown RBP eCLIP30.16■■■□□ 2.42
SKI-201ENST00000378536 KIF27Q86VH2 1401 aa30.15■■■□□ 2.42
SKI-201ENST00000378536 ERCC6Q03468 1493 aa30.15■■■□□ 2.42
SKI-201ENST00000378536 CLIP1P30622 1438 aa30.15■■■□□ 2.42
SKI-201ENST00000378536 GOLGA3Q08378 1498 aa30.14■■■□□ 2.42
SKI-201ENST00000378536 ZNF326Q5BKZ1 582 aaKnown RBP30.1■■■□□ 2.41
SKI-201ENST00000378536 DIEXFQ68CQ4 756 aaKnown RBP30.07■■■□□ 2.4
SKI-201ENST00000378536 CCDC88BA6NC98 1476 aa30.04■■■□□ 2.4
SKI-201ENST00000378536 MTUS2Q5JR59 1369 aa29.96■■■□□ 2.39
SKI-201ENST00000378536 CEP164Q9UPV0 1460 aa29.95■■■□□ 2.38
SKI-201ENST00000378536 CEP162Q5TB80 1403 aa29.94■■■□□ 2.38
SKI-201ENST00000378536 ERICH6Q7L0X2 663 aa29.91■■■□□ 2.38
SKI-201ENST00000378536 TOP2AP11388 1531 aaKnown RBP29.9■■■□□ 2.38
SKI-201ENST00000378536 WIZO95785 1651 aa29.9■■■□□ 2.38
SKI-201ENST00000378536 TNIKQ9UKE5 1360 aa29.84■■■□□ 2.37
SKI-201ENST00000378536 PDS5BQ9NTI5 1447 aa29.78■■■□□ 2.36
SKI-201ENST00000378536 CHIC2Q9UKJ5 165 aa29.78■■■□□ 2.36
SKI-201ENST00000378536 CUX2O14529 1486 aa29.77■■■□□ 2.36
SKI-201ENST00000378536 SMARCA4P51532 1647 aa29.76■■■□□ 2.36
SKI-201ENST00000378536 ESF1Q9H501 851 aaKnown RBP29.75■■■□□ 2.35
SKI-201ENST00000378536 ATAD2BQ9ULI0 1458 aa29.74■■■□□ 2.35
SKI-201ENST00000378536 ZNF316A6NFI3 1004 aaPredicted RBP29.74■■■□□ 2.35
SKI-201ENST00000378536 TSPY4P0CV99 314 aa29.72■■■□□ 2.35
SKI-201ENST00000378536 TSPY10P0CW01 314 aa29.72■■■□□ 2.35
SKI-201ENST00000378536 SOGA1O94964 1423 aa29.7■■■□□ 2.34
SKI-201ENST00000378536 ANP32CO43423 234 aa29.7■■■□□ 2.34
SKI-201ENST00000378536 ABCC8Q09428 1581 aa29.7■■■□□ 2.34
SKI-201ENST00000378536 BCANQ96GW7 911 aa29.7■■■□□ 2.34
SKI-201ENST00000378536 PLEKHD1A6NEE1 506 aa29.68■■■□□ 2.34
SKI-201ENST00000378536 CARMIL1Q5VZK9 1371 aa29.67■■■□□ 2.34
SKI-201ENST00000378536 TONSLQ96HA7 1378 aa29.65■■■□□ 2.34
SKI-201ENST00000378536 CADPSQ9ULU8 1353 aa29.61■■■□□ 2.33
SKI-201ENST00000378536 KCNH8Q96L42 1107 aa29.59■■■□□ 2.33
SKI-201ENST00000378536 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.57■■■□□ 2.328e-7■■■■□ 22.3
SKI-201ENST00000378536 CHGAP10645 457 aaKnown RBP29.54■■■□□ 2.32
SKI-201ENST00000378536 STAG3Q9UJ98 1225 aa29.51■■■□□ 2.31
SKI-201ENST00000378536 EIF4G1Q04637 1599 aaKnown RBP29.51■■■□□ 2.31
SKI-201ENST00000378536 RRP7BPQ9NSQ0 103 aa29.42■■■□□ 2.3
SKI-201ENST00000378536 FHAD1B1AJZ9 1412 aa29.42■■■□□ 2.3
SKI-201ENST00000378536 CFDP1Q9UEE9 299 aaPredicted RBP29.4■■■□□ 2.3
SKI-201ENST00000378536 TDRD9Q8NDG6 1382 aaKnown RBP29.39■■■□□ 2.3
SKI-201ENST00000378536 PLPPR3Q6T4P5 718 aa29.35■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms