RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 NISCHQ9Y2I1 1504 aa24.28■■□□□ 1.48
NEDD9-203ENST00000397378 ABCC9O60706 1549 aa22.89■■□□□ 1.26
NEDD9-203ENST00000397378 CCDC180Q9P1Z9 1646 aa22.14■■□□□ 1.14
NEDD9-203ENST00000397378 DNAJC5BQ9UF47 199 aa22.06■■□□□ 1.12
NEDD9-203ENST00000397378 RB1CC1Q8TDY2 1594 aa21.44■■□□□ 1.02
NEDD9-203ENST00000397378 PABPN1Q86U42 306 aaKnown RBP eCLIP21.17■□□□□ 0.98
NEDD9-203ENST00000397378 NACADO15069 1562 aa21.09■□□□□ 0.97
NEDD9-203ENST00000397378 UNC13AQ9UPW8 1703 aa20.98■□□□□ 0.95
NEDD9-203ENST00000397378 DCAF8L2P0C7V8 631 aa20.89■□□□□ 0.93
NEDD9-203ENST00000397378 BICRAQ9NZM4 1560 aa20.81■□□□□ 0.92
NEDD9-203ENST00000397378 DNAJC5Q9H3Z4 198 aa20.8■□□□□ 0.92
NEDD9-203ENST00000397378 CECR2Q9BXF3 1484 aa20.68■□□□□ 0.9
NEDD9-203ENST00000397378 CC2D2AQ9P2K1 1620 aa20.63■□□□□ 0.89
NEDD9-203ENST00000397378 MYO15BQ96JP2 1530 aa20.49■□□□□ 0.87
NEDD9-203ENST00000397378 SHROOM4Q9ULL8 1493 aa20.43■□□□□ 0.86
NEDD9-203ENST00000397378 EIF4G1Q04637 1599 aaKnown RBP20.39■□□□□ 0.85
NEDD9-203ENST00000397378 SCRIBQ14160 1630 aa20.16■□□□□ 0.82
NEDD9-203ENST00000397378 CUX2O14529 1486 aa19.99■□□□□ 0.79
NEDD9-203ENST00000397378 DCAF1Q9Y4B6 1507 aa19.97■□□□□ 0.79
NEDD9-203ENST00000397378 ZCCHC6Q5VYS8 1495 aaKnown RBP19.96■□□□□ 0.79
NEDD9-203ENST00000397378 ERCC6Q03468 1493 aa19.83■□□□□ 0.76
NEDD9-203ENST00000397378 TRIM41Q8WV44 630 aa19.68■□□□□ 0.74
NEDD9-203ENST00000397378 NCAPD3P42695 1498 aa19.45■□□□□ 0.7
NEDD9-203ENST00000397378 NESP48681 1621 aa19.43■□□□□ 0.7
NEDD9-203ENST00000397378 THOC2Q8NI27 1593 aaKnown RBP19.4■□□□□ 0.7
NEDD9-203ENST00000397378 ATAD2BQ9ULI0 1458 aa19.3■□□□□ 0.68
NEDD9-203ENST00000397378 SMARCA2P51531 1590 aa19.27■□□□□ 0.68
NEDD9-203ENST00000397378 HMGXB3Q12766 1538 aa19.26■□□□□ 0.67
NEDD9-203ENST00000397378 KIF21AQ7Z4S6 1674 aa19.2■□□□□ 0.66
NEDD9-203ENST00000397378 LAMC3Q9Y6N6 1575 aa19.18■□□□□ 0.66
NEDD9-203ENST00000397378 SMARCA4P51532 1647 aa19.13■□□□□ 0.65
NEDD9-203ENST00000397378 BAZ1BQ9UIG0 1483 aaKnown RBP19.11■□□□□ 0.65
NEDD9-203ENST00000397378 PDS5BQ9NTI5 1447 aa19.08■□□□□ 0.64
NEDD9-203ENST00000397378 BAZ1AQ9NRL2 1556 aaPredicted RBP19.06■□□□□ 0.64
NEDD9-203ENST00000397378 MRC2Q9UBG0 1479 aa18.97■□□□□ 0.63
NEDD9-203ENST00000397378 OSCARQ8IYS5 282 aa18.95■□□□□ 0.62
NEDD9-203ENST00000397378 WDR62O43379 1518 aa18.94■□□□□ 0.62
NEDD9-203ENST00000397378 PEG3Q9GZU2 1588 aa18.9■□□□□ 0.62
NEDD9-203ENST00000397378 CADPSQ9ULU8 1353 aa18.83■□□□□ 0.61
NEDD9-203ENST00000397378 RIMBP3CA6NJZ7 1639 aa18.83■□□□□ 0.61
NEDD9-203ENST00000397378 RIMBP3BA6NNM3 1639 aa18.83■□□□□ 0.61
NEDD9-203ENST00000397378 RIMBP3Q9UFD9 1639 aa18.83■□□□□ 0.61
NEDD9-203ENST00000397378 CEP164Q9UPV0 1460 aa18.76■□□□□ 0.59
NEDD9-203ENST00000397378 MROH2BQ7Z745 1585 aa18.71■□□□□ 0.59
NEDD9-203ENST00000397378 AEBP2Q6ZN18 517 aaPredicted RBP18.69■□□□□ 0.58
NEDD9-203ENST00000397378 ARHGEF11O15085 1522 aa18.69■□□□□ 0.58
NEDD9-203ENST00000397378 TRHP20396 242 aaPredicted RBP18.67■□□□□ 0.58
NEDD9-203ENST00000397378 FANCD2Q9BXW9 1451 aa18.66■□□□□ 0.58
NEDD9-203ENST00000397378 CYB5RLQ6IPT4 315 aa18.59■□□□□ 0.57
NEDD9-203ENST00000397378 URB2Q14146 1524 aaKnown RBP18.54■□□□□ 0.56
NEDD9-203ENST00000397378 WIZO95785 1651 aa18.49■□□□□ 0.55
NEDD9-203ENST00000397378 CFTRP13569 1480 aa18.46■□□□□ 0.55
NEDD9-203ENST00000397378 ZNF608Q9ULD9 1512 aaPredicted RBP18.44■□□□□ 0.54
NEDD9-203ENST00000397378 ARAP1Q96P48 1450 aa18.44■□□□□ 0.54
NEDD9-203ENST00000397378 IFT140Q96RY7 1462 aa18.39■□□□□ 0.53
NEDD9-203ENST00000397378 CHD1O14646 1710 aa18.36■□□□□ 0.53
NEDD9-203ENST00000397378 EIF4G3O43432 1585 aaKnown RBP18.34■□□□□ 0.53
NEDD9-203ENST00000397378 PRDM2Q13029 1718 aa18.29■□□□□ 0.52
NEDD9-203ENST00000397378 RSF1Q96T23 1441 aaPredicted RBP18.29■□□□□ 0.52
NEDD9-203ENST00000397378 FBLN2P98095 1184 aa18.26■□□□□ 0.51
NEDD9-203ENST00000397378 TOPBP1Q92547 1522 aa18.22■□□□□ 0.51
NEDD9-203ENST00000397378 AQRO60306 1485 aaKnown RBP eCLIP18.18■□□□□ 0.53e-8■■■□□ 16.2
NEDD9-203ENST00000397378 TOP2AP11388 1531 aaKnown RBP18.17■□□□□ 0.5
NEDD9-203ENST00000397378 ABCC8Q09428 1581 aa18.11■□□□□ 0.49
NEDD9-203ENST00000397378 TARBP1Q13395 1621 aaKnown RBP18.11■□□□□ 0.49
NEDD9-203ENST00000397378 DNMBPQ6XZF7 1577 aa18.08■□□□□ 0.49
NEDD9-203ENST00000397378 CLASP1Q7Z460 1538 aa18.08■□□□□ 0.48
NEDD9-203ENST00000397378 SYNJ1O43426 1573 aa18.02■□□□□ 0.48
NEDD9-203ENST00000397378 SNAPC4Q5SXM2 1469 aa17.99■□□□□ 0.47
NEDD9-203ENST00000397378 POLA1P09884 1462 aaPredicted RBP17.98■□□□□ 0.47
NEDD9-203ENST00000397378 CCDC88BA6NC98 1476 aa17.96■□□□□ 0.47
NEDD9-203ENST00000397378 CHMP7Q8WUX9 453 aaPredicted RBP17.96■□□□□ 0.47
NEDD9-203ENST00000397378 GAPVD1Q14C86 1478 aa17.95■□□□□ 0.46
NEDD9-203ENST00000397378 TDRD9Q8NDG6 1382 aaKnown RBP17.95■□□□□ 0.46
NEDD9-203ENST00000397378 ILDR1Q86SU0 546 aaPredicted RBP17.95■□□□□ 0.46
NEDD9-203ENST00000397378 RAD54L2Q9Y4B4 1467 aa17.94■□□□□ 0.46
NEDD9-203ENST00000397378 SOGA1O94964 1423 aa17.89■□□□□ 0.45
NEDD9-203ENST00000397378 MAGI1Q96QZ7 1491 aaPredicted RBP17.88■□□□□ 0.45
NEDD9-203ENST00000397378 WDR97A6NE52 1622 aa17.87■□□□□ 0.45
NEDD9-203ENST00000397378 SYNJ2O15056 1496 aa17.85■□□□□ 0.45
NEDD9-203ENST00000397378 GRIN2BQ13224 1484 aa17.82■□□□□ 0.44
NEDD9-203ENST00000397378 KIF13AQ9H1H9 1805 aa17.79■□□□□ 0.44
NEDD9-203ENST00000397378 FGD5Q6ZNL6 1462 aa17.77■□□□□ 0.44
NEDD9-203ENST00000397378 ERCC6L2Q5T890 1561 aa17.76■□□□□ 0.43
NEDD9-203ENST00000397378 PBRM1Q86U86 1689 aa17.75■□□□□ 0.43
NEDD9-203ENST00000397378 KDM4FA0A1W2PPD8 638 aa17.68■□□□□ 0.42
NEDD9-203ENST00000397378 CEP170Q5SW79 1584 aa17.65■□□□□ 0.42
NEDD9-203ENST00000397378 CUX1P39880 1505 aa17.62■□□□□ 0.41
NEDD9-203ENST00000397378 KDM6BO15054 1643 aa17.59■□□□□ 0.41
NEDD9-203ENST00000397378 GRIN2AQ12879 1464 aa17.59■□□□□ 0.41
NEDD9-203ENST00000397378 FAM69CQ0P6D2 419 aa17.59■□□□□ 0.41
NEDD9-203ENST00000397378 ABCA5Q8WWZ7 1642 aa17.57■□□□□ 0.4
NEDD9-203ENST00000397378 SHROOM2Q13796 1616 aa17.56■□□□□ 0.4
NEDD9-203ENST00000397378 ABCC10Q5T3U5 1492 aa17.55■□□□□ 0.4
NEDD9-203ENST00000397378 NUP160Q12769 1436 aa17.53■□□□□ 0.4
NEDD9-203ENST00000397378 DIP2BQ9P265 1576 aa17.51■□□□□ 0.39
NEDD9-203ENST00000397378 ADAMTS12P58397 1594 aa17.5■□□□□ 0.39
NEDD9-203ENST00000397378 ABCA10Q8WWZ4 1543 aa17.5■□□□□ 0.39
NEDD9-203ENST00000397378 NPM1P06748 294 aaKnown RBP eCLIP17.49■□□□□ 0.39
NEDD9-203ENST00000397378 TSPOAP1O95153 1857 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms