Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 MLH1-205ENST00000432299 928 ntTSL 1 (best)15.83■□□□□ 0.127e-11■□□□□ 10.7
YBX3P16989 MLH1-220ENST00000492474 589 ntTSL 511.18□□□□□ -0.627e-11■□□□□ 10.7
YBX3P16989 MLH1-204ENST00000429117 562 ntTSL 411.01□□□□□ -0.657e-11■□□□□ 10.7
YBX3P16989 MLH1-219ENST00000485889 566 ntTSL 56.99□□□□□ -1.297e-11■□□□□ 10.7
YBX3P16989 MLH1-207ENST00000441265 917 ntTSL 56.64□□□□□ -1.357e-11■□□□□ 10.7
YBX3P16989 MLH1-217ENST00000466900 555 ntTSL 44.28□□□□□ -1.727e-11■□□□□ 10.7
YBX3P16989 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC34.29■■■■□ 3.082e-7■□□□□ 10.7
YBX3P16989 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC33.51■■■□□ 2.952e-7■□□□□ 10.7
YBX3P16989 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC27.49■■□□□ 1.992e-7■□□□□ 10.7
YBX3P16989 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.72e-7■□□□□ 10.7
YBX3P16989 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC17.94■□□□□ 0.462e-7■□□□□ 10.7
YBX3P16989 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.251e-15■□□□□ 10.7
YBX3P16989 RBBP4-201ENST00000373485 1417 ntAPPRIS ALT1 TSL 1 (best) BASIC11.59□□□□□ -0.551e-15■□□□□ 10.7
YBX3P16989 RBBP4-206ENST00000458695 1674 ntTSL 2 BASIC10.02□□□□□ -0.811e-15■□□□□ 10.7
YBX3P16989 RBBP4-214ENST00000492348 1547 ntTSL 27.93□□□□□ -1.141e-15■□□□□ 10.7
YBX3P16989 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC7.51□□□□□ -1.211e-15■□□□□ 10.7
YBX3P16989 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.531e-6■□□□□ 10.7
YBX3P16989 AC005726.2-201ENST00000481916 2091 ntTSL 1 (best)22.94■■□□□ 1.264e-7■□□□□ 10.7
YBX3P16989 GNL2-209ENST00000538069 698 ntTSL 311.95□□□□□ -0.52e-6■□□□□ 10.7
YBX3P16989 GNL2-204ENST00000469191 533 ntTSL 38.8□□□□□ -12e-6■□□□□ 10.7
YBX3P16989 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC19.89■□□□□ 0.772e-8■□□□□ 10.7
YBX3P16989 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC18.94■□□□□ 0.622e-8■□□□□ 10.7
YBX3P16989 PPIE-210ENST00000475350 1213 ntTSL 212.98□□□□□ -0.332e-8■□□□□ 10.7
YBX3P16989 PPIE-201ENST00000324379 1277 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.352e-8■□□□□ 10.7
YBX3P16989 PPIE-212ENST00000482751 2564 ntTSL 210.32□□□□□ -0.762e-8■□□□□ 10.7
YBX3P16989 PPIE-214ENST00000495526 4651 ntTSL 1 (best)8.19□□□□□ -1.12e-8■□□□□ 10.7
YBX3P16989 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC8.69□□□□□ -1.023e-9■□□□□ 10.7
YBX3P16989 FERMT3-208ENST00000545896 911 ntTSL 523.5■■□□□ 1.351e-6■□□□□ 10.7
YBX3P16989 ATG5-209ENST00000636335 1219 ntTSL 519.82■□□□□ 0.767e-7■□□□□ 10.7
YBX3P16989 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC18.05■□□□□ 0.487e-7■□□□□ 10.7
YBX3P16989 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.227e-7■□□□□ 10.7
YBX3P16989 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.151e-6■□□□□ 10.7
YBX3P16989 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.061e-6■□□□□ 10.7
YBX3P16989 ATG5-202ENST00000360666 2712 ntTSL 1 (best) BASIC13.56□□□□□ -0.247e-7■□□□□ 10.7
YBX3P16989 ATG5-208ENST00000635758 3035 ntTSL 1 (best) BASIC13.13□□□□□ -0.317e-7■□□□□ 10.7
YBX3P16989 ATG5-203ENST00000369070 3088 ntTSL 1 (best)11.97□□□□□ -0.497e-7■□□□□ 10.7
YBX3P16989 ATG5-204ENST00000369076 3216 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.567e-7■□□□□ 10.7
YBX3P16989 Y_RNA.158-201ENST00000363651 101 ntBASIC5.67□□□□□ -1.51e-323■□□□□ 10.7
YBX3P16989 BUB1-207ENST00000466333 2501 ntTSL 1 (best)8.73□□□□□ -1.015e-7■□□□□ 10.7
YBX3P16989 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC23.27■■□□□ 1.323e-9■□□□□ 10.7
YBX3P16989 LMNB1-203ENST00000460265 3475 ntTSL 1 (best)15.98■□□□□ 0.153e-9■□□□□ 10.7
YBX3P16989 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.153e-9■□□□□ 10.7
YBX3P16989 LMNB1-205ENST00000472034 730 ntTSL 36.88□□□□□ -1.313e-9■□□□□ 10.7
YBX3P16989 LMNB1-208ENST00000504788 1801 ntTSL 26.2□□□□□ -1.423e-9■□□□□ 10.7
YBX3P16989 LMNB1-207ENST00000494185 579 ntTSL 23.52□□□□□ -1.853e-9■□□□□ 10.7
YBX3P16989 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.052e-7■□□□□ 10.7
YBX3P16989 IDH3B-209ENST00000488299 1620 ntTSL 221.04■□□□□ 0.962e-7■□□□□ 10.7
YBX3P16989 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.952e-7■□□□□ 10.7
YBX3P16989 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.832e-7■□□□□ 10.7
YBX3P16989 IPO5-205ENST00000460070 544 ntTSL 410.93□□□□□ -0.662e-9■□□□□ 10.7
YBX3P16989 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.57■□□□□ 0.42e-9■□□□□ 10.7
YBX3P16989 EIF6-208ENST00000462894 453 ntTSL 335.95■■■■□ 3.352e-7■□□□□ 10.7
YBX3P16989 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.462e-7■□□□□ 10.7
YBX3P16989 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.242e-7■□□□□ 10.7
YBX3P16989 EIF6-207ENST00000456600 551 ntTSL 329.06■■■□□ 2.242e-7■□□□□ 10.7
YBX3P16989 EIF6-204ENST00000415116 739 ntTSL 526.55■■□□□ 1.842e-7■□□□□ 10.7
YBX3P16989 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC23.19■■□□□ 1.32e-7■□□□□ 10.7
YBX3P16989 EIF6-205ENST00000440766 798 ntTSL 221.92■■□□□ 1.12e-7■□□□□ 10.7
YBX3P16989 EIF6-206ENST00000447927 932 ntTSL 1 (best)21.92■■□□□ 1.12e-7■□□□□ 10.7
YBX3P16989 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 12e-7■□□□□ 10.7
YBX3P16989 ITGB1-202ENST00000396033 3784 ntAPPRIS P2 TSL 5 BASIC13.31□□□□□ -0.287e-8■□□□□ 10.7
YBX3P16989 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC9.35□□□□□ -0.917e-8■□□□□ 10.7
YBX3P16989 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC5.59□□□□□ -1.517e-8■□□□□ 10.7
YBX3P16989 GSPT1-201ENST00000420576 1603 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.181e-7■□□□□ 10.7
YBX3P16989 EIF2D-211ENST00000620382 1274 ntTSL 215.34■□□□□ 0.052e-11■□□□□ 10.7
YBX3P16989 EIF2D-207ENST00000474408 484 ntTSL 313.87□□□□□ -0.192e-11■□□□□ 10.7
YBX3P16989 STAT5A-206ENST00000479417 553 ntTSL 317.29■□□□□ 0.368e-9■□□□□ 10.7
YBX3P16989 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.312e-6■□□□□ 10.7
YBX3P16989 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.312e-6■□□□□ 10.7
YBX3P16989 MRPL55-222ENST00000457264 544 ntTSL 323.21■■□□□ 1.312e-6■□□□□ 10.7
YBX3P16989 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.832e-6■□□□□ 10.7
YBX3P16989 MRPL55-225ENST00000465268 848 ntTSL 220.18■□□□□ 0.822e-6■□□□□ 10.7
YBX3P16989 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.822e-6■□□□□ 10.7
YBX3P16989 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC20.16■□□□□ 0.822e-6■□□□□ 10.7
YBX3P16989 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.722e-6■□□□□ 10.7
YBX3P16989 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.632e-6■□□□□ 10.7
YBX3P16989 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.632e-6■□□□□ 10.7
YBX3P16989 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC18.02■□□□□ 0.482e-6■□□□□ 10.7
YBX3P16989 MRPL55-219ENST00000391867 685 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.342e-6■□□□□ 10.7
YBX3P16989 MRPL55-209ENST00000366735 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.322e-6■□□□□ 10.7
YBX3P16989 MRPL55-210ENST00000366736 660 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.262e-6■□□□□ 10.7
YBX3P16989 MRPL55-213ENST00000366740 644 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.212e-6■□□□□ 10.7
YBX3P16989 MRPL55-212ENST00000366739 641 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.182e-6■□□□□ 10.7
YBX3P16989 MRPL55-207ENST00000366733 834 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.162e-6■□□□□ 10.7
YBX3P16989 MRPL55-203ENST00000336520 744 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.022e-6■□□□□ 10.7
YBX3P16989 MRPL55-221ENST00000430433 864 ntTSL 5 BASIC14.93□□□□□ -0.022e-6■□□□□ 10.7
YBX3P16989 MRPL55-204ENST00000348259 661 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.232e-6■□□□□ 10.7
YBX3P16989 MRPL55-223ENST00000459783 694 ntTSL 5 BASIC13.19□□□□□ -0.32e-6■□□□□ 10.7
YBX3P16989 MRPL55-216ENST00000366744 726 ntAPPRIS P1 TSL 3 BASIC12.1□□□□□ -0.472e-6■□□□□ 10.7
YBX3P16989 MRPL55-211ENST00000366738 705 ntTSL 1 (best) BASIC11.51□□□□□ -0.572e-6■□□□□ 10.7
YBX3P16989 QARS-241ENST00000635375 947 ntTSL 315.87■□□□□ 0.139e-10■□□□□ 10.7
YBX3P16989 FAXDC2-205ENST00000517938 1203 ntTSL 2 BASIC15.61■□□□□ 0.091e-6■□□□□ 10.7
YBX3P16989 SEPT9-209ENST00000585638 565 ntTSL 419.35■□□□□ 0.699e-7■□□□□ 10.7
YBX3P16989 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.651e-6■□□□□ 10.7
YBX3P16989 NUP93-204ENST00000563405 477 ntTSL 24.29□□□□□ -1.721e-8■□□□□ 10.7
YBX3P16989 GRK2-206ENST00000527176 970 ntTSL 220.16■□□□□ 0.822e-8■□□□□ 10.7
YBX3P16989 MPHOSPH9-208ENST00000539024 3414 ntTSL 1 (best)9.81□□□□□ -0.843e-7■□□□□ 10.7
YBX3P16989 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC6.29□□□□□ -1.43e-7■□□□□ 10.7
YBX3P16989 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.613e-7■□□□□ 10.7
YBX3P16989 MPHOSPH9-201ENST00000302373 3097 ntTSL 1 (best)4.52□□□□□ -1.693e-7■□□□□ 10.7
Retrieved 100 of 29,075 protein–RNA pairs in 247.3 ms