RNA–Protein interactions for RNA: ENST00000504788.5

LMNB1-208, Transcript of lamin B1, humanhuman

TSL 2

Gene LMNB1, Length 1,801 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-208ENST00000504788 AEBP2Q6ZN18 517 aaPredicted RBP12.17□□□□□ -0.46
LMNB1-208ENST00000504788 NISCHQ9Y2I1 1504 aa12.05□□□□□ -0.48
LMNB1-208ENST00000504788 CHIC1Q5VXU3 224 aa11.54□□□□□ -0.56
LMNB1-208ENST00000504788 CCDC180Q9P1Z9 1646 aa10.67□□□□□ -0.7
LMNB1-208ENST00000504788 SENP3Q9H4L4 574 aaPredicted RBP10.61□□□□□ -0.71
LMNB1-208ENST00000504788 PHF23Q9BUL5 403 aaPredicted RBP10.34□□□□□ -0.75
LMNB1-208ENST00000504788 ABCC9O60706 1549 aa10.21□□□□□ -0.77
LMNB1-208ENST00000504788 ZCCHC6Q5VYS8 1495 aaKnown RBP10.09□□□□□ -0.79
LMNB1-208ENST00000504788 DCAF1Q9Y4B6 1507 aa10.01□□□□□ -0.81
LMNB1-208ENST00000504788 MYO15BQ96JP2 1530 aa10□□□□□ -0.81
LMNB1-208ENST00000504788 POTEDQ86YR6 584 aa9.96□□□□□ -0.82
LMNB1-208ENST00000504788 NACADO15069 1562 aa9.95□□□□□ -0.82
LMNB1-208ENST00000504788 RB1CC1Q8TDY2 1594 aa9.9□□□□□ -0.82
LMNB1-208ENST00000504788 FOXD1Q16676 465 aa9.84□□□□□ -0.83
LMNB1-208ENST00000504788 UNC13AQ9UPW8 1703 aa9.81□□□□□ -0.84
LMNB1-208ENST00000504788 DCAF8L2P0C7V8 631 aa9.79□□□□□ -0.84
LMNB1-208ENST00000504788 BICRAQ9NZM4 1560 aa9.71□□□□□ -0.85
LMNB1-208ENST00000504788 SCRIBQ14160 1630 aa9.69□□□□□ -0.86
LMNB1-208ENST00000504788 SHROOM4Q9ULL8 1493 aa9.55□□□□□ -0.88
LMNB1-208ENST00000504788 PABPN1Q86U42 306 aaKnown RBP eCLIP9.53□□□□□ -0.88
LMNB1-208ENST00000504788 MSH5O43196 834 aa9.52□□□□□ -0.89
LMNB1-208ENST00000504788 CECR2Q9BXF3 1484 aa9.38□□□□□ -0.91
LMNB1-208ENST00000504788 EIF4G1Q04637 1599 aaKnown RBP9.38□□□□□ -0.91
LMNB1-208ENST00000504788 SMARCA4P51532 1647 aa9.32□□□□□ -0.92
LMNB1-208ENST00000504788 DNAJC5BQ9UF47 199 aa9.31□□□□□ -0.92
LMNB1-208ENST00000504788 MROH2BQ7Z745 1585 aa9.3□□□□□ -0.92
LMNB1-208ENST00000504788 BAZ1AQ9NRL2 1556 aaPredicted RBP9.3□□□□□ -0.92
LMNB1-208ENST00000504788 CC2D2AQ9P2K1 1620 aa9.3□□□□□ -0.92
LMNB1-208ENST00000504788 PEG3Q9GZU2 1588 aa9.28□□□□□ -0.92
LMNB1-208ENST00000504788 RSF1Q96T23 1441 aaPredicted RBP9.23□□□□□ -0.93
LMNB1-208ENST00000504788 ATAD2BQ9ULI0 1458 aa9.22□□□□□ -0.93
LMNB1-208ENST00000504788 WIZO95785 1651 aa9.21□□□□□ -0.94
LMNB1-208ENST00000504788 NCAPD3P42695 1498 aa9.2□□□□□ -0.94
LMNB1-208ENST00000504788 SMARCA2P51531 1590 aa9.18□□□□□ -0.94
LMNB1-208ENST00000504788 HMGXB3Q12766 1538 aa9.18□□□□□ -0.94
LMNB1-208ENST00000504788 PIAS4Q8N2W9 510 aaPredicted RBP9.12□□□□□ -0.95
LMNB1-208ENST00000504788 BAZ1BQ9UIG0 1483 aaKnown RBP9.09□□□□□ -0.95
LMNB1-208ENST00000504788 TOP2AP11388 1531 aaKnown RBP9.09□□□□□ -0.95
LMNB1-208ENST00000504788 CCDC88BA6NC98 1476 aa8.98□□□□□ -0.97
LMNB1-208ENST00000504788 SUPT5HO00267 1087 aaKnown RBP8.96□□□□□ -0.98
LMNB1-208ENST00000504788 NESP48681 1621 aa8.93□□□□□ -0.98
LMNB1-208ENST00000504788 CFTRP13569 1480 aa8.92□□□□□ -0.98
LMNB1-208ENST00000504788 LAMC3Q9Y6N6 1575 aa8.92□□□□□ -0.98
LMNB1-208ENST00000504788 PRDM2Q13029 1718 aa8.9□□□□□ -0.99
LMNB1-208ENST00000504788 CADPSQ9ULU8 1353 aa8.89□□□□□ -0.99
LMNB1-208ENST00000504788 KIF21AQ7Z4S6 1674 aa8.85□□□□□ -0.99
LMNB1-208ENST00000504788 PLPPR3Q6T4P5 718 aa8.8□□□□□ -1
LMNB1-208ENST00000504788 THOC2Q8NI27 1593 aaKnown RBP8.8□□□□□ -1
LMNB1-208ENST00000504788 FANCD2Q9BXW9 1451 aa8.79□□□□□ -1
LMNB1-208ENST00000504788 PPP6R1Q9UPN7 881 aa8.79□□□□□ -1
LMNB1-208ENST00000504788 PDS5BQ9NTI5 1447 aa8.78□□□□□ -1
LMNB1-208ENST00000504788 ADRA2BP18089 450 aa8.76□□□□□ -1.01
LMNB1-208ENST00000504788 CEP164Q9UPV0 1460 aa8.75□□□□□ -1.01
LMNB1-208ENST00000504788 WDR62O43379 1518 aa8.74□□□□□ -1.01
LMNB1-208ENST00000504788 URB2Q14146 1524 aaKnown RBP8.74□□□□□ -1.01
LMNB1-208ENST00000504788 ERCC6Q03468 1493 aa8.71□□□□□ -1.01
LMNB1-208ENST00000504788 MRC2Q9UBG0 1479 aa8.71□□□□□ -1.01
LMNB1-208ENST00000504788 CUX1P39880 1505 aa8.71□□□□□ -1.02
LMNB1-208ENST00000504788 ABCC8Q09428 1581 aa8.7□□□□□ -1.02
LMNB1-208ENST00000504788 DNMBPQ6XZF7 1577 aa8.69□□□□□ -1.02
LMNB1-208ENST00000504788 TOPBP1Q92547 1522 aa8.69□□□□□ -1.02
LMNB1-208ENST00000504788 BIVM-ERCC5R4GMW8 1640 aa8.69□□□□□ -1.02
LMNB1-208ENST00000504788 SYNJ1O43426 1573 aa8.69□□□□□ -1.02
LMNB1-208ENST00000504788 CUX2O14529 1486 aa8.67□□□□□ -1.02
LMNB1-208ENST00000504788 TOP2BQ02880 1626 aa8.67□□□□□ -1.02
LMNB1-208ENST00000504788 WRNQ14191 1432 aaPredicted RBP eCLIP8.65□□□□□ -1.03
LMNB1-208ENST00000504788 TARBP1Q13395 1621 aaKnown RBP8.64□□□□□ -1.03
LMNB1-208ENST00000504788 POLA1P09884 1462 aaPredicted RBP8.64□□□□□ -1.03
LMNB1-208ENST00000504788 WDR97A6NE52 1622 aa8.63□□□□□ -1.03
LMNB1-208ENST00000504788 FGD5Q6ZNL6 1462 aa8.62□□□□□ -1.03
LMNB1-208ENST00000504788 RAD54L2Q9Y4B4 1467 aa8.58□□□□□ -1.04
LMNB1-208ENST00000504788 IFT140Q96RY7 1462 aa8.56□□□□□ -1.04
LMNB1-208ENST00000504788 ABCA10Q8WWZ4 1543 aa8.56□□□□□ -1.04
LMNB1-208ENST00000504788 ZNF608Q9ULD9 1512 aaPredicted RBP8.56□□□□□ -1.04
LMNB1-208ENST00000504788 ABCA5Q8WWZ7 1642 aa8.56□□□□□ -1.04
LMNB1-208ENST00000504788 SOGA1O94964 1423 aa8.54□□□□□ -1.04
LMNB1-208ENST00000504788 EIF4G3O43432 1585 aaKnown RBP8.54□□□□□ -1.04
LMNB1-208ENST00000504788 AQRO60306 1485 aaKnown RBP eCLIP8.5□□□□□ -1.056e-7■■■■■ 27.9
LMNB1-208ENST00000504788 PBRM1Q86U86 1689 aa8.49□□□□□ -1.05
LMNB1-208ENST00000504788 RUSC2Q8N2Y8 1516 aa8.49□□□□□ -1.05
LMNB1-208ENST00000504788 TDRD9Q8NDG6 1382 aaKnown RBP8.49□□□□□ -1.05
LMNB1-208ENST00000504788 GAPVD1Q14C86 1478 aa8.47□□□□□ -1.05
LMNB1-208ENST00000504788 TRIM41Q8WV44 630 aa8.45□□□□□ -1.06
LMNB1-208ENST00000504788 ERICH3Q5RHP9 1530 aa8.45□□□□□ -1.06
LMNB1-208ENST00000504788 GRIN2BQ13224 1484 aa8.44□□□□□ -1.06
LMNB1-208ENST00000504788 IGF1RP08069 1367 aa8.43□□□□□ -1.06
LMNB1-208ENST00000504788 ADAMTS12P58397 1594 aa8.43□□□□□ -1.06
LMNB1-208ENST00000504788 KIF27Q86VH2 1401 aa8.43□□□□□ -1.06
LMNB1-208ENST00000504788 SNAPC4Q5SXM2 1469 aa8.42□□□□□ -1.06
LMNB1-208ENST00000504788 MAGI1Q96QZ7 1491 aaPredicted RBP8.42□□□□□ -1.06
LMNB1-208ENST00000504788 CHD1O14646 1710 aa8.41□□□□□ -1.06
LMNB1-208ENST00000504788 CACNB1Q02641 598 aaPredicted RBP8.41□□□□□ -1.06
LMNB1-208ENST00000504788 CUL7Q14999 1698 aa8.4□□□□□ -1.07
LMNB1-208ENST00000504788 PRXQ9BXM0 1461 aa8.39□□□□□ -1.07
LMNB1-208ENST00000504788 SYNJ2O15056 1496 aa8.38□□□□□ -1.07
LMNB1-208ENST00000504788 FHAD1B1AJZ9 1412 aa8.37□□□□□ -1.07
LMNB1-208ENST00000504788 EEA1Q15075 1411 aa8.36□□□□□ -1.07
LMNB1-208ENST00000504788 GRIN2AQ12879 1464 aa8.36□□□□□ -1.07
LMNB1-208ENST00000504788 CEP170Q5SW79 1584 aa8.35□□□□□ -1.07
LMNB1-208ENST00000504788 NUP160Q12769 1436 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms