RNA–Protein interactions for RNA: ENST00000366739.5

MRPL55-212, Transcript of mitochondrial ribosomal protein L55, humanhuman

APPRIS P1 TSL 3 BASIC

Gene MRPL55, Length 641 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL55-212ENST00000366739 NISCHQ9Y2I1 1504 aa29.09■■■□□ 2.25
MRPL55-212ENST00000366739 ABCC9O60706 1549 aa26.49■■□□□ 1.83
MRPL55-212ENST00000366739 CCDC180Q9P1Z9 1646 aa26.17■■□□□ 1.78
MRPL55-212ENST00000366739 DNAJC5BQ9UF47 199 aa25.11■■□□□ 1.61
MRPL55-212ENST00000366739 RB1CC1Q8TDY2 1594 aa25.05■■□□□ 1.6
MRPL55-212ENST00000366739 NACADO15069 1562 aa24.82■■□□□ 1.56
MRPL55-212ENST00000366739 DCAF8L2P0C7V8 631 aa24.69■■□□□ 1.54
MRPL55-212ENST00000366739 PABPN1Q86U42 306 aaKnown RBP eCLIP24.65■■□□□ 1.54
MRPL55-212ENST00000366739 UNC13AQ9UPW8 1703 aa24.47■■□□□ 1.51
MRPL55-212ENST00000366739 MYO15BQ96JP2 1530 aa24.38■■□□□ 1.49
MRPL55-212ENST00000366739 BICRAQ9NZM4 1560 aa24.37■■□□□ 1.49
MRPL55-212ENST00000366739 ZCCHC6Q5VYS8 1495 aaKnown RBP24.06■■□□□ 1.44
MRPL55-212ENST00000366739 DCAF1Q9Y4B6 1507 aa23.98■■□□□ 1.43
MRPL55-212ENST00000366739 SHROOM4Q9ULL8 1493 aa23.96■■□□□ 1.43
MRPL55-212ENST00000366739 CC2D2AQ9P2K1 1620 aa23.89■■□□□ 1.42
MRPL55-212ENST00000366739 SCRIBQ14160 1630 aa23.88■■□□□ 1.41
MRPL55-212ENST00000366739 CECR2Q9BXF3 1484 aa23.88■■□□□ 1.41
MRPL55-212ENST00000366739 EIF4G1Q04637 1599 aaKnown RBP23.78■■□□□ 1.4
MRPL55-212ENST00000366739 DNAJC5Q9H3Z4 198 aa23.2■■□□□ 1.3
MRPL55-212ENST00000366739 NCAPD3P42695 1498 aa22.93■■□□□ 1.26
MRPL55-212ENST00000366739 CUX2O14529 1486 aa22.9■■□□□ 1.26
MRPL55-212ENST00000366739 ERCC6Q03468 1493 aa22.87■■□□□ 1.25
MRPL55-212ENST00000366739 ATAD2BQ9ULI0 1458 aa22.84■■□□□ 1.25
MRPL55-212ENST00000366739 SMARCA2P51531 1590 aa22.74■■□□□ 1.23
MRPL55-212ENST00000366739 SMARCA4P51532 1647 aa22.74■■□□□ 1.23
MRPL55-212ENST00000366739 HMGXB3Q12766 1538 aa22.72■■□□□ 1.23
MRPL55-212ENST00000366739 NESP48681 1621 aa22.69■■□□□ 1.22
MRPL55-212ENST00000366739 BAZ1BQ9UIG0 1483 aaKnown RBP22.6■■□□□ 1.21
MRPL55-212ENST00000366739 BAZ1AQ9NRL2 1556 aaPredicted RBP22.58■■□□□ 1.2
MRPL55-212ENST00000366739 PEG3Q9GZU2 1588 aa22.5■■□□□ 1.19
MRPL55-212ENST00000366739 THOC2Q8NI27 1593 aaKnown RBP22.48■■□□□ 1.19
MRPL55-212ENST00000366739 LAMC3Q9Y6N6 1575 aa22.44■■□□□ 1.18
MRPL55-212ENST00000366739 MROH2BQ7Z745 1585 aa22.43■■□□□ 1.18
MRPL55-212ENST00000366739 KIF21AQ7Z4S6 1674 aa22.34■■□□□ 1.17
MRPL55-212ENST00000366739 PDS5BQ9NTI5 1447 aa22.33■■□□□ 1.17
MRPL55-212ENST00000366739 CADPSQ9ULU8 1353 aa22.24■■□□□ 1.15
MRPL55-212ENST00000366739 MRC2Q9UBG0 1479 aa22.17■■□□□ 1.14
MRPL55-212ENST00000366739 WIZO95785 1651 aa22.13■■□□□ 1.13
MRPL55-212ENST00000366739 WDR62O43379 1518 aa22.11■■□□□ 1.13
MRPL55-212ENST00000366739 TRIM41Q8WV44 630 aa22.11■■□□□ 1.13
MRPL55-212ENST00000366739 CEP164Q9UPV0 1460 aa22.03■■□□□ 1.12
MRPL55-212ENST00000366739 FANCD2Q9BXW9 1451 aa21.99■■□□□ 1.11
MRPL55-212ENST00000366739 CFTRP13569 1480 aa21.92■■□□□ 1.1
MRPL55-212ENST00000366739 RSF1Q96T23 1441 aaPredicted RBP21.87■■□□□ 1.09
MRPL55-212ENST00000366739 URB2Q14146 1524 aaKnown RBP21.84■■□□□ 1.09
MRPL55-212ENST00000366739 OSCARQ8IYS5 282 aa21.83■■□□□ 1.09
MRPL55-212ENST00000366739 TOP2AP11388 1531 aaKnown RBP21.83■■□□□ 1.09
MRPL55-212ENST00000366739 ZNF608Q9ULD9 1512 aaPredicted RBP21.62■■□□□ 1.05
MRPL55-212ENST00000366739 PRDM2Q13029 1718 aa21.61■■□□□ 1.05
MRPL55-212ENST00000366739 CCDC88BA6NC98 1476 aa21.6■■□□□ 1.05
MRPL55-212ENST00000366739 IFT140Q96RY7 1462 aa21.59■■□□□ 1.05
MRPL55-212ENST00000366739 RIMBP3CA6NJZ7 1639 aa21.57■■□□□ 1.04
MRPL55-212ENST00000366739 RIMBP3BA6NNM3 1639 aa21.57■■□□□ 1.04
MRPL55-212ENST00000366739 RIMBP3Q9UFD9 1639 aa21.57■■□□□ 1.04
MRPL55-212ENST00000366739 TOPBP1Q92547 1522 aa21.54■■□□□ 1.04
MRPL55-212ENST00000366739 ARHGEF11O15085 1522 aa21.49■■□□□ 1.03
MRPL55-212ENST00000366739 EIF4G3O43432 1585 aaKnown RBP21.45■■□□□ 1.02
MRPL55-212ENST00000366739 ABCC8Q09428 1581 aa21.44■■□□□ 1.02
MRPL55-212ENST00000366739 DNMBPQ6XZF7 1577 aa21.42■■□□□ 1.02
MRPL55-212ENST00000366739 AQRO60306 1485 aaKnown RBP eCLIP21.39■■□□□ 1.018e-7■■■■■ 27.9
MRPL55-212ENST00000366739 TARBP1Q13395 1621 aaKnown RBP21.36■■□□□ 1.01
MRPL55-212ENST00000366739 CYB5RLQ6IPT4 315 aa21.35■■□□□ 1.01
MRPL55-212ENST00000366739 CHD1O14646 1710 aa21.32■■□□□ 1
MRPL55-212ENST00000366739 POLA1P09884 1462 aaPredicted RBP21.31■■□□□ 1
MRPL55-212ENST00000366739 FBLN2P98095 1184 aa21.29■■□□□ 1
MRPL55-212ENST00000366739 ARAP1Q96P48 1450 aa21.27■■□□□ 1
MRPL55-212ENST00000366739 RAD54L2Q9Y4B4 1467 aa21.26■□□□□ 0.99
MRPL55-212ENST00000366739 TDRD9Q8NDG6 1382 aaKnown RBP21.22■□□□□ 0.99
MRPL55-212ENST00000366739 SOGA1O94964 1423 aa21.21■□□□□ 0.99
MRPL55-212ENST00000366739 TRHP20396 242 aaPredicted RBP21.2■□□□□ 0.98
MRPL55-212ENST00000366739 SNAPC4Q5SXM2 1469 aa21.15■□□□□ 0.98
MRPL55-212ENST00000366739 FGD5Q6ZNL6 1462 aa21.14■□□□□ 0.98
MRPL55-212ENST00000366739 CLASP1Q7Z460 1538 aa21.1■□□□□ 0.97
MRPL55-212ENST00000366739 CUX1P39880 1505 aa21.09■□□□□ 0.97
MRPL55-212ENST00000366739 WDR97A6NE52 1622 aa21.08■□□□□ 0.97
MRPL55-212ENST00000366739 CHMP7Q8WUX9 453 aaPredicted RBP21.08■□□□□ 0.97
MRPL55-212ENST00000366739 MAGI1Q96QZ7 1491 aaPredicted RBP21.07■□□□□ 0.96
MRPL55-212ENST00000366739 GRIN2BQ13224 1484 aa21.04■□□□□ 0.96
MRPL55-212ENST00000366739 SYNJ1O43426 1573 aa21.04■□□□□ 0.96
MRPL55-212ENST00000366739 SYNJ2O15056 1496 aa21■□□□□ 0.95
MRPL55-212ENST00000366739 GAPVD1Q14C86 1478 aa20.94■□□□□ 0.94
MRPL55-212ENST00000366739 PBRM1Q86U86 1689 aa20.91■□□□□ 0.94
MRPL55-212ENST00000366739 ABCA10Q8WWZ4 1543 aa20.87■□□□□ 0.93
MRPL55-212ENST00000366739 ABCA5Q8WWZ7 1642 aa20.86■□□□□ 0.93
MRPL55-212ENST00000366739 ERCC6L2Q5T890 1561 aa20.78■□□□□ 0.92
MRPL55-212ENST00000366739 GRIN2AQ12879 1464 aa20.78■□□□□ 0.92
MRPL55-212ENST00000366739 AEBP2Q6ZN18 517 aaPredicted RBP20.75■□□□□ 0.91
MRPL55-212ENST00000366739 WRNQ14191 1432 aaPredicted RBP eCLIP20.74■□□□□ 0.91
MRPL55-212ENST00000366739 ADAMTS12P58397 1594 aa20.73■□□□□ 0.91
MRPL55-212ENST00000366739 SUPT5HO00267 1087 aaKnown RBP20.73■□□□□ 0.91
MRPL55-212ENST00000366739 CEP170Q5SW79 1584 aa20.72■□□□□ 0.91
MRPL55-212ENST00000366739 NUP160Q12769 1436 aa20.72■□□□□ 0.91
MRPL55-212ENST00000366739 FHAD1B1AJZ9 1412 aa20.66■□□□□ 0.9
MRPL55-212ENST00000366739 TOP2BQ02880 1626 aa20.65■□□□□ 0.9
MRPL55-212ENST00000366739 BIVM-ERCC5R4GMW8 1640 aa20.64■□□□□ 0.9
MRPL55-212ENST00000366739 SHROOM2Q13796 1616 aa20.64■□□□□ 0.89
MRPL55-212ENST00000366739 ERICH3Q5RHP9 1530 aa20.59■□□□□ 0.89
MRPL55-212ENST00000366739 PRG4Q92954 1404 aaPredicted RBP20.55■□□□□ 0.88
MRPL55-212ENST00000366739 JPH4Q96JJ6 628 aa20.51■□□□□ 0.87
MRPL55-212ENST00000366739 KIF13AQ9H1H9 1805 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms