RNA–Protein interactions for RNA: ENST00000366738.5

MRPL55-211, Transcript of mitochondrial ribosomal protein L55, humanhuman

TSL 1 (best) BASIC

Gene MRPL55, Length 705 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL55-211ENST00000366738 NISCHQ9Y2I1 1504 aa20.43■□□□□ 0.86
MRPL55-211ENST00000366738 ABCC9O60706 1549 aa18.9■□□□□ 0.62
MRPL55-211ENST00000366738 CCDC180Q9P1Z9 1646 aa18.49■□□□□ 0.55
MRPL55-211ENST00000366738 DNAJC5BQ9UF47 199 aa18.06■□□□□ 0.48
MRPL55-211ENST00000366738 RB1CC1Q8TDY2 1594 aa17.78■□□□□ 0.44
MRPL55-211ENST00000366738 NACADO15069 1562 aa17.55■□□□□ 0.4
MRPL55-211ENST00000366738 PABPN1Q86U42 306 aaKnown RBP eCLIP17.53■□□□□ 0.4
MRPL55-211ENST00000366738 UNC13AQ9UPW8 1703 aa17.42■□□□□ 0.38
MRPL55-211ENST00000366738 DCAF8L2P0C7V8 631 aa17.4■□□□□ 0.38
MRPL55-211ENST00000366738 BICRAQ9NZM4 1560 aa17.32■□□□□ 0.36
MRPL55-211ENST00000366738 MYO15BQ96JP2 1530 aa17.15■□□□□ 0.34
MRPL55-211ENST00000366738 CECR2Q9BXF3 1484 aa17.05■□□□□ 0.32
MRPL55-211ENST00000366738 CC2D2AQ9P2K1 1620 aa17.04■□□□□ 0.32
MRPL55-211ENST00000366738 SHROOM4Q9ULL8 1493 aa16.97■□□□□ 0.31
MRPL55-211ENST00000366738 EIF4G1Q04637 1599 aaKnown RBP16.91■□□□□ 0.3
MRPL55-211ENST00000366738 SCRIBQ14160 1630 aa16.88■□□□□ 0.29
MRPL55-211ENST00000366738 ZCCHC6Q5VYS8 1495 aaKnown RBP16.86■□□□□ 0.29
MRPL55-211ENST00000366738 DCAF1Q9Y4B6 1507 aa16.81■□□□□ 0.28
MRPL55-211ENST00000366738 DNAJC5Q9H3Z4 198 aa16.81■□□□□ 0.28
MRPL55-211ENST00000366738 CUX2O14529 1486 aa16.4■□□□□ 0.22
MRPL55-211ENST00000366738 ERCC6Q03468 1493 aa16.33■□□□□ 0.2
MRPL55-211ENST00000366738 NCAPD3P42695 1498 aa16.21■□□□□ 0.19
MRPL55-211ENST00000366738 NESP48681 1621 aa16.15■□□□□ 0.18
MRPL55-211ENST00000366738 ATAD2BQ9ULI0 1458 aa16.13■□□□□ 0.17
MRPL55-211ENST00000366738 HMGXB3Q12766 1538 aa16.08■□□□□ 0.16
MRPL55-211ENST00000366738 THOC2Q8NI27 1593 aaKnown RBP16.05■□□□□ 0.16
MRPL55-211ENST00000366738 SMARCA2P51531 1590 aa16.04■□□□□ 0.16
MRPL55-211ENST00000366738 SMARCA4P51532 1647 aa16.04■□□□□ 0.16
MRPL55-211ENST00000366738 TRIM41Q8WV44 630 aa15.97■□□□□ 0.15
MRPL55-211ENST00000366738 BAZ1BQ9UIG0 1483 aaKnown RBP15.96■□□□□ 0.14
MRPL55-211ENST00000366738 KIF21AQ7Z4S6 1674 aa15.92■□□□□ 0.14
MRPL55-211ENST00000366738 LAMC3Q9Y6N6 1575 aa15.91■□□□□ 0.14
MRPL55-211ENST00000366738 BAZ1AQ9NRL2 1556 aaPredicted RBP15.87■□□□□ 0.13
MRPL55-211ENST00000366738 PEG3Q9GZU2 1588 aa15.85■□□□□ 0.13
MRPL55-211ENST00000366738 PDS5BQ9NTI5 1447 aa15.81■□□□□ 0.12
MRPL55-211ENST00000366738 MROH2BQ7Z745 1585 aa15.76■□□□□ 0.11
MRPL55-211ENST00000366738 MRC2Q9UBG0 1479 aa15.74■□□□□ 0.11
MRPL55-211ENST00000366738 WDR62O43379 1518 aa15.73■□□□□ 0.11
MRPL55-211ENST00000366738 CADPSQ9ULU8 1353 aa15.7■□□□□ 0.1
MRPL55-211ENST00000366738 CEP164Q9UPV0 1460 aa15.59■□□□□ 0.09
MRPL55-211ENST00000366738 WIZO95785 1651 aa15.57■□□□□ 0.08
MRPL55-211ENST00000366738 FANCD2Q9BXW9 1451 aa15.55■□□□□ 0.08
MRPL55-211ENST00000366738 OSCARQ8IYS5 282 aa15.55■□□□□ 0.08
MRPL55-211ENST00000366738 RIMBP3CA6NJZ7 1639 aa15.47■□□□□ 0.07
MRPL55-211ENST00000366738 RIMBP3BA6NNM3 1639 aa15.47■□□□□ 0.07
MRPL55-211ENST00000366738 RIMBP3Q9UFD9 1639 aa15.47■□□□□ 0.07
MRPL55-211ENST00000366738 URB2Q14146 1524 aaKnown RBP15.47■□□□□ 0.07
MRPL55-211ENST00000366738 CFTRP13569 1480 aa15.46■□□□□ 0.06
MRPL55-211ENST00000366738 ARHGEF11O15085 1522 aa15.38■□□□□ 0.05
MRPL55-211ENST00000366738 ZNF608Q9ULD9 1512 aaPredicted RBP15.35■□□□□ 0.05
MRPL55-211ENST00000366738 RSF1Q96T23 1441 aaPredicted RBP15.34■□□□□ 0.05
MRPL55-211ENST00000366738 TOP2AP11388 1531 aaKnown RBP15.32■□□□□ 0.04
MRPL55-211ENST00000366738 IFT140Q96RY7 1462 aa15.29■□□□□ 0.04
MRPL55-211ENST00000366738 PRDM2Q13029 1718 aa15.29■□□□□ 0.04
MRPL55-211ENST00000366738 CYB5RLQ6IPT4 315 aa15.25■□□□□ 0.03
MRPL55-211ENST00000366738 EIF4G3O43432 1585 aaKnown RBP15.24■□□□□ 0.03
MRPL55-211ENST00000366738 TOPBP1Q92547 1522 aa15.22■□□□□ 0.03
MRPL55-211ENST00000366738 ARAP1Q96P48 1450 aa15.21■□□□□ 0.03
MRPL55-211ENST00000366738 TRHP20396 242 aaPredicted RBP15.21■□□□□ 0.03
MRPL55-211ENST00000366738 CHD1O14646 1710 aa15.2■□□□□ 0.02
MRPL55-211ENST00000366738 CCDC88BA6NC98 1476 aa15.14■□□□□ 0.01
MRPL55-211ENST00000366738 AQRO60306 1485 aaKnown RBP eCLIP15.14■□□□□ 0.018e-7■■■■■ 27.9
MRPL55-211ENST00000366738 DNMBPQ6XZF7 1577 aa15.13■□□□□ 0.01
MRPL55-211ENST00000366738 TARBP1Q13395 1621 aaKnown RBP15.12■□□□□ 0.01
MRPL55-211ENST00000366738 FBLN2P98095 1184 aa15.1■□□□□ 0.01
MRPL55-211ENST00000366738 ABCC8Q09428 1581 aa15.09■□□□□ 0.01
MRPL55-211ENST00000366738 POLA1P09884 1462 aaPredicted RBP15.04■□□□□ -0
MRPL55-211ENST00000366738 AEBP2Q6ZN18 517 aaPredicted RBP15.03■□□□□ -0
MRPL55-211ENST00000366738 RAD54L2Q9Y4B4 1467 aa15.01□□□□□ -0.01
MRPL55-211ENST00000366738 CLASP1Q7Z460 1538 aa15.01□□□□□ -0.01
MRPL55-211ENST00000366738 SNAPC4Q5SXM2 1469 aa14.99□□□□□ -0.01
MRPL55-211ENST00000366738 TDRD9Q8NDG6 1382 aaKnown RBP14.98□□□□□ -0.01
MRPL55-211ENST00000366738 SYNJ1O43426 1573 aa14.94□□□□□ -0.02
MRPL55-211ENST00000366738 SOGA1O94964 1423 aa14.93□□□□□ -0.02
MRPL55-211ENST00000366738 FGD5Q6ZNL6 1462 aa14.9□□□□□ -0.02
MRPL55-211ENST00000366738 CHMP7Q8WUX9 453 aaPredicted RBP14.9□□□□□ -0.02
MRPL55-211ENST00000366738 MAGI1Q96QZ7 1491 aaPredicted RBP14.89□□□□□ -0.03
MRPL55-211ENST00000366738 WDR97A6NE52 1622 aa14.88□□□□□ -0.03
MRPL55-211ENST00000366738 SYNJ2O15056 1496 aa14.86□□□□□ -0.03
MRPL55-211ENST00000366738 GRIN2BQ13224 1484 aa14.86□□□□□ -0.03
MRPL55-211ENST00000366738 GAPVD1Q14C86 1478 aa14.86□□□□□ -0.03
MRPL55-211ENST00000366738 CUX1P39880 1505 aa14.83□□□□□ -0.04
MRPL55-211ENST00000366738 PBRM1Q86U86 1689 aa14.81□□□□□ -0.04
MRPL55-211ENST00000366738 ERCC6L2Q5T890 1561 aa14.78□□□□□ -0.04
MRPL55-211ENST00000366738 ABCA5Q8WWZ7 1642 aa14.73□□□□□ -0.05
MRPL55-211ENST00000366738 CEP170Q5SW79 1584 aa14.69□□□□□ -0.06
MRPL55-211ENST00000366738 GRIN2AQ12879 1464 aa14.69□□□□□ -0.06
MRPL55-211ENST00000366738 ABCA10Q8WWZ4 1543 aa14.68□□□□□ -0.06
MRPL55-211ENST00000366738 KIF13AQ9H1H9 1805 aa14.66□□□□□ -0.06
MRPL55-211ENST00000366738 ADAMTS12P58397 1594 aa14.66□□□□□ -0.06
MRPL55-211ENST00000366738 NUP160Q12769 1436 aa14.64□□□□□ -0.07
MRPL55-211ENST00000366738 SHROOM2Q13796 1616 aa14.63□□□□□ -0.07
MRPL55-211ENST00000366738 SUPT5HO00267 1087 aaKnown RBP14.63□□□□□ -0.07
MRPL55-211ENST00000366738 FHAD1B1AJZ9 1412 aa14.54□□□□□ -0.08
MRPL55-211ENST00000366738 WRNQ14191 1432 aaPredicted RBP eCLIP14.53□□□□□ -0.08
MRPL55-211ENST00000366738 PRG4Q92954 1404 aaPredicted RBP14.53□□□□□ -0.08
MRPL55-211ENST00000366738 ABCC10Q5T3U5 1492 aa14.5□□□□□ -0.09
MRPL55-211ENST00000366738 FAM69CQ0P6D2 419 aa14.5□□□□□ -0.09
MRPL55-211ENST00000366738 DIP2BQ9P265 1576 aa14.49□□□□□ -0.09
MRPL55-211ENST00000366738 ERICH3Q5RHP9 1530 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms