RNA–Protein interactions for RNA: ENST00000396033.6

ITGB1-202, Transcript of integrin subunit beta 1, humanhuman

APPRIS P2 TSL 5 BASIC

Gene ITGB1, Length 3,784 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-202ENST00000396033 NISCHQ9Y2I1 1504 aa26.67■■□□□ 1.86
ITGB1-202ENST00000396033 CCDC180Q9P1Z9 1646 aa23.06■■□□□ 1.28
ITGB1-202ENST00000396033 ZCCHC6Q5VYS8 1495 aaKnown RBP22.47■■□□□ 1.19
ITGB1-202ENST00000396033 SHROOM4Q9ULL8 1493 aa22.14■■□□□ 1.13
ITGB1-202ENST00000396033 DCAF8L2P0C7V8 631 aa22.06■■□□□ 1.12
ITGB1-202ENST00000396033 DCAF1Q9Y4B6 1507 aa21.99■■□□□ 1.11
ITGB1-202ENST00000396033 ABCC9O60706 1549 aa21.64■■□□□ 1.05
ITGB1-202ENST00000396033 MYO15BQ96JP2 1530 aa21.59■■□□□ 1.05
ITGB1-202ENST00000396033 SUPT5HO00267 1087 aaKnown RBP21.44■■□□□ 1.02
ITGB1-202ENST00000396033 NACADO15069 1562 aa21.41■■□□□ 1.02
ITGB1-202ENST00000396033 SCRIBQ14160 1630 aa21.37■■□□□ 1.01
ITGB1-202ENST00000396033 RB1CC1Q8TDY2 1594 aa21.18■□□□□ 0.98
ITGB1-202ENST00000396033 RSF1Q96T23 1441 aaPredicted RBP20.84■□□□□ 0.93
ITGB1-202ENST00000396033 UNC13AQ9UPW8 1703 aa20.78■□□□□ 0.92
ITGB1-202ENST00000396033 CECR2Q9BXF3 1484 aa20.75■□□□□ 0.91
ITGB1-202ENST00000396033 MROH2BQ7Z745 1585 aa20.65■□□□□ 0.9
ITGB1-202ENST00000396033 CHIC1Q5VXU3 224 aa20.63■□□□□ 0.89
ITGB1-202ENST00000396033 BAZ1AQ9NRL2 1556 aaPredicted RBP20.57■□□□□ 0.88
ITGB1-202ENST00000396033 BICRAQ9NZM4 1560 aa20.54■□□□□ 0.88
ITGB1-202ENST00000396033 WIZO95785 1651 aa20.52■□□□□ 0.87
ITGB1-202ENST00000396033 PABPN1Q86U42 306 aaKnown RBP eCLIP20.5■□□□□ 0.87
ITGB1-202ENST00000396033 SMARCA4P51532 1647 aa20.45■□□□□ 0.86
ITGB1-202ENST00000396033 TOP2AP11388 1531 aaKnown RBP20.27■□□□□ 0.84
ITGB1-202ENST00000396033 PEG3Q9GZU2 1588 aa20.13■□□□□ 0.81
ITGB1-202ENST00000396033 SMARCA2P51531 1590 aa20.1■□□□□ 0.81
ITGB1-202ENST00000396033 CCDC88BA6NC98 1476 aa20.09■□□□□ 0.81
ITGB1-202ENST00000396033 TRIM41Q8WV44 630 aa20.09■□□□□ 0.81
ITGB1-202ENST00000396033 EIF4G1Q04637 1599 aaKnown RBP20.06■□□□□ 0.8
ITGB1-202ENST00000396033 ATAD2BQ9ULI0 1458 aa20.03■□□□□ 0.8
ITGB1-202ENST00000396033 BAZ1BQ9UIG0 1483 aaKnown RBP19.96■□□□□ 0.79
ITGB1-202ENST00000396033 LOC105371045A0A1W2PR82 267 aa19.9■□□□□ 0.78
ITGB1-202ENST00000396033 ABCC8Q09428 1581 aa19.82■□□□□ 0.76
ITGB1-202ENST00000396033 FAM9AQ8IZU1 332 aaPredicted RBP19.8■□□□□ 0.76
ITGB1-202ENST00000396033 HMGXB3Q12766 1538 aa19.77■□□□□ 0.76
ITGB1-202ENST00000396033 NCAPD3P42695 1498 aa19.76■□□□□ 0.75
ITGB1-202ENST00000396033 WRNQ14191 1432 aaPredicted RBP eCLIP19.62■□□□□ 0.73
ITGB1-202ENST00000396033 EHMT2Q96KQ7 1210 aa19.58■□□□□ 0.72
ITGB1-202ENST00000396033 CC2D2AQ9P2K1 1620 aa19.55■□□□□ 0.72
ITGB1-202ENST00000396033 SYNJ1O43426 1573 aa19.53■□□□□ 0.72
ITGB1-202ENST00000396033 SOGA1O94964 1423 aa19.51■□□□□ 0.71
ITGB1-202ENST00000396033 EEA1Q15075 1411 aa19.46■□□□□ 0.71
ITGB1-202ENST00000396033 CFTRP13569 1480 aa19.44■□□□□ 0.7
ITGB1-202ENST00000396033 RUSC2Q8N2Y8 1516 aa19.41■□□□□ 0.7
ITGB1-202ENST00000396033 TOP2BQ02880 1626 aa19.39■□□□□ 0.7
ITGB1-202ENST00000396033 CSRNP3Q8WYN3 585 aa19.36■□□□□ 0.69
ITGB1-202ENST00000396033 BIVM-ERCC5R4GMW8 1640 aa19.36■□□□□ 0.69
ITGB1-202ENST00000396033 PCGF6Q9BYE7 350 aa19.35■□□□□ 0.69
ITGB1-202ENST00000396033 PRDM2Q13029 1718 aa19.34■□□□□ 0.69
ITGB1-202ENST00000396033 CADPSQ9ULU8 1353 aa19.31■□□□□ 0.68
ITGB1-202ENST00000396033 CUX1P39880 1505 aa19.29■□□□□ 0.68
ITGB1-202ENST00000396033 GOLGA3Q08378 1498 aa19.26■□□□□ 0.67
ITGB1-202ENST00000396033 TNIKQ9UKE5 1360 aa19.24■□□□□ 0.67
ITGB1-202ENST00000396033 CEP164Q9UPV0 1460 aa19.21■□□□□ 0.67
ITGB1-202ENST00000396033 KIF21BO75037 1637 aa19.21■□□□□ 0.67
ITGB1-202ENST00000396033 UBTFP17480 764 aaKnown RBP19.2■□□□□ 0.66
ITGB1-202ENST00000396033 TRIM26Q12899 539 aaPredicted RBP19.2■□□□□ 0.66
ITGB1-202ENST00000396033 CEP162Q5TB80 1403 aa19.2■□□□□ 0.66
ITGB1-202ENST00000396033 FANCD2Q9BXW9 1451 aa19.13■□□□□ 0.65
ITGB1-202ENST00000396033 NESP48681 1621 aa19.1■□□□□ 0.65
ITGB1-202ENST00000396033 RAPGEF2Q9Y4G8 1499 aa19.09■□□□□ 0.65
ITGB1-202ENST00000396033 KIF27Q86VH2 1401 aa19.08■□□□□ 0.65
ITGB1-202ENST00000396033 HRCP23327 699 aa19.05■□□□□ 0.64
ITGB1-202ENST00000396033 LAMC3Q9Y6N6 1575 aa19.05■□□□□ 0.64
ITGB1-202ENST00000396033 FGD5Q6ZNL6 1462 aa19.04■□□□□ 0.64
ITGB1-202ENST00000396033 PRXQ9BXM0 1461 aa19.01■□□□□ 0.63
ITGB1-202ENST00000396033 ERICH3Q5RHP9 1530 aa19.01■□□□□ 0.63
ITGB1-202ENST00000396033 DNAJC5BQ9UF47 199 aa19.01■□□□□ 0.63
ITGB1-202ENST00000396033 PPARGC1BQ86YN6 1023 aaKnown RBP19■□□□□ 0.63
ITGB1-202ENST00000396033 DNMBPQ6XZF7 1577 aa18.99■□□□□ 0.63
ITGB1-202ENST00000396033 CUX2O14529 1486 aa18.99■□□□□ 0.63
ITGB1-202ENST00000396033 CLIP1P30622 1438 aa18.97■□□□□ 0.63
ITGB1-202ENST00000396033 TOPBP1Q92547 1522 aa18.95■□□□□ 0.62
ITGB1-202ENST00000396033 PDS5BQ9NTI5 1447 aa18.91■□□□□ 0.62
ITGB1-202ENST00000396033 POLA1P09884 1462 aaPredicted RBP18.89■□□□□ 0.61
ITGB1-202ENST00000396033 RANGAP1P46060 587 aaPredicted RBP18.87■□□□□ 0.61
ITGB1-202ENST00000396033 IGF1RP08069 1367 aa18.87■□□□□ 0.61
ITGB1-202ENST00000396033 URB2Q14146 1524 aaKnown RBP18.87■□□□□ 0.61
ITGB1-202ENST00000396033 RAD54L2Q9Y4B4 1467 aa18.86■□□□□ 0.61
ITGB1-202ENST00000396033 KIF21AQ7Z4S6 1674 aa18.84■□□□□ 0.61
ITGB1-202ENST00000396033 ABCA10Q8WWZ4 1543 aa18.84■□□□□ 0.61
ITGB1-202ENST00000396033 VPS8Q8N3P4 1428 aa18.84■□□□□ 0.61
ITGB1-202ENST00000396033 TTBK1Q5TCY1 1321 aaPredicted RBP18.82■□□□□ 0.6
ITGB1-202ENST00000396033 CARMIL1Q5VZK9 1371 aa18.8■□□□□ 0.6
ITGB1-202ENST00000396033 WDR97A6NE52 1622 aa18.75■□□□□ 0.59
ITGB1-202ENST00000396033 ARAP1Q96P48 1450 aa18.74■□□□□ 0.59
ITGB1-202ENST00000396033 APLP2Q06481 763 aa18.7■□□□□ 0.58
ITGB1-202ENST00000396033 CUL7Q14999 1698 aa18.69■□□□□ 0.58
ITGB1-202ENST00000396033 ARHGAP35Q9NRY4 1499 aa18.67■□□□□ 0.58
ITGB1-202ENST00000396033 ABCA5Q8WWZ7 1642 aa18.66■□□□□ 0.58
ITGB1-202ENST00000396033 MRC2Q9UBG0 1479 aa18.66■□□□□ 0.58
ITGB1-202ENST00000396033 TDRD9Q8NDG6 1382 aaKnown RBP18.65■□□□□ 0.58
ITGB1-202ENST00000396033 GAPVD1Q14C86 1478 aa18.63■□□□□ 0.57
ITGB1-202ENST00000396033 TARBP1Q13395 1621 aaKnown RBP18.62■□□□□ 0.57
ITGB1-202ENST00000396033 ZEB1P37275 1124 aaPredicted RBP18.58■□□□□ 0.57
ITGB1-202ENST00000396033 CTTNBP2Q8WZ74 1663 aa18.54■□□□□ 0.56
ITGB1-202ENST00000396033 WDR62O43379 1518 aa18.54■□□□□ 0.56
ITGB1-202ENST00000396033 ERCC6Q03468 1493 aa18.52■□□□□ 0.56
ITGB1-202ENST00000396033 PBRM1Q86U86 1689 aa18.5■□□□□ 0.55
ITGB1-202ENST00000396033 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.48■□□□□ 0.55
ITGB1-202ENST00000396033 EFCAB5A4FU69 1503 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms