RNA–Protein interactions for RNA: ENST00000302278.7

ITGB1-201, Transcript of integrin subunit beta 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene ITGB1, Length 3,640 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-201ENST00000302278 NISCHQ9Y2I1 1504 aa17.13■□□□□ 0.33
ITGB1-201ENST00000302278 CCDC180Q9P1Z9 1646 aa15.7■□□□□ 0.1
ITGB1-201ENST00000302278 ABCC9O60706 1549 aa15.49■□□□□ 0.07
ITGB1-201ENST00000302278 RB1CC1Q8TDY2 1594 aa14.89□□□□□ -0.03
ITGB1-201ENST00000302278 NACADO15069 1562 aa14.77□□□□□ -0.04
ITGB1-201ENST00000302278 DNAJC5BQ9UF47 199 aa14.71□□□□□ -0.05
ITGB1-201ENST00000302278 UNC13AQ9UPW8 1703 aa14.68□□□□□ -0.06
ITGB1-201ENST00000302278 MYO15BQ96JP2 1530 aa14.64□□□□□ -0.07
ITGB1-201ENST00000302278 BICRAQ9NZM4 1560 aa14.51□□□□□ -0.09
ITGB1-201ENST00000302278 SHROOM4Q9ULL8 1493 aa14.44□□□□□ -0.1
ITGB1-201ENST00000302278 DCAF1Q9Y4B6 1507 aa14.32□□□□□ -0.12
ITGB1-201ENST00000302278 PABPN1Q86U42 306 aaKnown RBP eCLIP14.23□□□□□ -0.13
ITGB1-201ENST00000302278 ZCCHC6Q5VYS8 1495 aaKnown RBP14.2□□□□□ -0.14
ITGB1-201ENST00000302278 CC2D2AQ9P2K1 1620 aa14.17□□□□□ -0.14
ITGB1-201ENST00000302278 EIF4G1Q04637 1599 aaKnown RBP14.1□□□□□ -0.15
ITGB1-201ENST00000302278 CECR2Q9BXF3 1484 aa14.06□□□□□ -0.16
ITGB1-201ENST00000302278 SCRIBQ14160 1630 aa13.99□□□□□ -0.17
ITGB1-201ENST00000302278 DCAF8L2P0C7V8 631 aa13.98□□□□□ -0.17
ITGB1-201ENST00000302278 DNAJC5Q9H3Z4 198 aa13.75□□□□□ -0.21
ITGB1-201ENST00000302278 CUX2O14529 1486 aa13.69□□□□□ -0.22
ITGB1-201ENST00000302278 NCAPD3P42695 1498 aa13.59□□□□□ -0.23
ITGB1-201ENST00000302278 HMGXB3Q12766 1538 aa13.55□□□□□ -0.24
ITGB1-201ENST00000302278 SMARCA2P51531 1590 aa13.46□□□□□ -0.25
ITGB1-201ENST00000302278 PEG3Q9GZU2 1588 aa13.46□□□□□ -0.25
ITGB1-201ENST00000302278 SMARCA4P51532 1647 aa13.46□□□□□ -0.26
ITGB1-201ENST00000302278 ATAD2BQ9ULI0 1458 aa13.45□□□□□ -0.26
ITGB1-201ENST00000302278 THOC2Q8NI27 1593 aaKnown RBP13.44□□□□□ -0.26
ITGB1-201ENST00000302278 ERCC6Q03468 1493 aa13.39□□□□□ -0.27
ITGB1-201ENST00000302278 LAMC3Q9Y6N6 1575 aa13.37□□□□□ -0.27
ITGB1-201ENST00000302278 BAZ1AQ9NRL2 1556 aaPredicted RBP13.33□□□□□ -0.28
ITGB1-201ENST00000302278 KIF21AQ7Z4S6 1674 aa13.29□□□□□ -0.28
ITGB1-201ENST00000302278 NESP48681 1621 aa13.29□□□□□ -0.28
ITGB1-201ENST00000302278 BAZ1BQ9UIG0 1483 aaKnown RBP13.26□□□□□ -0.29
ITGB1-201ENST00000302278 WDR62O43379 1518 aa13.18□□□□□ -0.3
ITGB1-201ENST00000302278 PDS5BQ9NTI5 1447 aa13.14□□□□□ -0.31
ITGB1-201ENST00000302278 MROH2BQ7Z745 1585 aa13.13□□□□□ -0.31
ITGB1-201ENST00000302278 MRC2Q9UBG0 1479 aa13.1□□□□□ -0.31
ITGB1-201ENST00000302278 CADPSQ9ULU8 1353 aa13.05□□□□□ -0.32
ITGB1-201ENST00000302278 PRDM2Q13029 1718 aa13.03□□□□□ -0.32
ITGB1-201ENST00000302278 WIZO95785 1651 aa12.98□□□□□ -0.33
ITGB1-201ENST00000302278 CEP164Q9UPV0 1460 aa12.96□□□□□ -0.34
ITGB1-201ENST00000302278 CFTRP13569 1480 aa12.94□□□□□ -0.34
ITGB1-201ENST00000302278 FANCD2Q9BXW9 1451 aa12.91□□□□□ -0.34
ITGB1-201ENST00000302278 TOP2AP11388 1531 aaKnown RBP12.88□□□□□ -0.35
ITGB1-201ENST00000302278 URB2Q14146 1524 aaKnown RBP12.86□□□□□ -0.35
ITGB1-201ENST00000302278 RIMBP3CA6NJZ7 1639 aa12.84□□□□□ -0.35
ITGB1-201ENST00000302278 RIMBP3BA6NNM3 1639 aa12.84□□□□□ -0.35
ITGB1-201ENST00000302278 RIMBP3Q9UFD9 1639 aa12.84□□□□□ -0.35
ITGB1-201ENST00000302278 TRIM41Q8WV44 630 aa12.77□□□□□ -0.36
ITGB1-201ENST00000302278 IFT140Q96RY7 1462 aa12.76□□□□□ -0.37
ITGB1-201ENST00000302278 OSCARQ8IYS5 282 aa12.76□□□□□ -0.37
ITGB1-201ENST00000302278 RSF1Q96T23 1441 aaPredicted RBP12.75□□□□□ -0.37
ITGB1-201ENST00000302278 EIF4G3O43432 1585 aaKnown RBP12.72□□□□□ -0.37
ITGB1-201ENST00000302278 ARHGEF11O15085 1522 aa12.72□□□□□ -0.37
ITGB1-201ENST00000302278 ABCC8Q09428 1581 aa12.7□□□□□ -0.38
ITGB1-201ENST00000302278 TARBP1Q13395 1621 aaKnown RBP12.7□□□□□ -0.38
ITGB1-201ENST00000302278 WDR97A6NE52 1622 aa12.69□□□□□ -0.38
ITGB1-201ENST00000302278 CHD1O14646 1710 aa12.68□□□□□ -0.38
ITGB1-201ENST00000302278 DNMBPQ6XZF7 1577 aa12.68□□□□□ -0.38
ITGB1-201ENST00000302278 TOPBP1Q92547 1522 aa12.68□□□□□ -0.38
ITGB1-201ENST00000302278 ZNF608Q9ULD9 1512 aaPredicted RBP12.66□□□□□ -0.38
ITGB1-201ENST00000302278 CCDC88BA6NC98 1476 aa12.62□□□□□ -0.39
ITGB1-201ENST00000302278 CLASP1Q7Z460 1538 aa12.58□□□□□ -0.4
ITGB1-201ENST00000302278 ARAP1Q96P48 1450 aa12.57□□□□□ -0.4
ITGB1-201ENST00000302278 POLA1P09884 1462 aaPredicted RBP12.51□□□□□ -0.41
ITGB1-201ENST00000302278 SYNJ1O43426 1573 aa12.46□□□□□ -0.41
ITGB1-201ENST00000302278 MAGI1Q96QZ7 1491 aaPredicted RBP12.46□□□□□ -0.41
ITGB1-201ENST00000302278 AQRO60306 1485 aaKnown RBP eCLIP12.46□□□□□ -0.424e-7■■■■□ 26.7
ITGB1-201ENST00000302278 PBRM1Q86U86 1689 aa12.45□□□□□ -0.42
ITGB1-201ENST00000302278 SNAPC4Q5SXM2 1469 aa12.4□□□□□ -0.42
ITGB1-201ENST00000302278 ABCA5Q8WWZ7 1642 aa12.4□□□□□ -0.42
ITGB1-201ENST00000302278 SYNJ2O15056 1496 aa12.38□□□□□ -0.43
ITGB1-201ENST00000302278 CUX1P39880 1505 aa12.38□□□□□ -0.43
ITGB1-201ENST00000302278 FGD5Q6ZNL6 1462 aa12.38□□□□□ -0.43
ITGB1-201ENST00000302278 GRIN2BQ13224 1484 aa12.37□□□□□ -0.43
ITGB1-201ENST00000302278 RAD54L2Q9Y4B4 1467 aa12.37□□□□□ -0.43
ITGB1-201ENST00000302278 SOGA1O94964 1423 aa12.36□□□□□ -0.43
ITGB1-201ENST00000302278 SHROOM2Q13796 1616 aa12.35□□□□□ -0.43
ITGB1-201ENST00000302278 CYB5RLQ6IPT4 315 aa12.35□□□□□ -0.43
ITGB1-201ENST00000302278 ABCA10Q8WWZ4 1543 aa12.32□□□□□ -0.44
ITGB1-201ENST00000302278 TDRD9Q8NDG6 1382 aaKnown RBP12.28□□□□□ -0.44
ITGB1-201ENST00000302278 ADAMTS12P58397 1594 aa12.28□□□□□ -0.44
ITGB1-201ENST00000302278 GAPVD1Q14C86 1478 aa12.27□□□□□ -0.44
ITGB1-201ENST00000302278 BIVM-ERCC5R4GMW8 1640 aa12.27□□□□□ -0.45
ITGB1-201ENST00000302278 KIF13AQ9H1H9 1805 aa12.27□□□□□ -0.45
ITGB1-201ENST00000302278 NUP160Q12769 1436 aa12.25□□□□□ -0.45
ITGB1-201ENST00000302278 CEP170Q5SW79 1584 aa12.24□□□□□ -0.45
ITGB1-201ENST00000302278 GRIN2AQ12879 1464 aa12.23□□□□□ -0.45
ITGB1-201ENST00000302278 TRHP20396 242 aaPredicted RBP12.21□□□□□ -0.45
ITGB1-201ENST00000302278 ERCC6L2Q5T890 1561 aa12.21□□□□□ -0.45
ITGB1-201ENST00000302278 TOP2BQ02880 1626 aa12.19□□□□□ -0.46
ITGB1-201ENST00000302278 ERICH3Q5RHP9 1530 aa12.19□□□□□ -0.46
ITGB1-201ENST00000302278 CHMP7Q8WUX9 453 aaPredicted RBP12.18□□□□□ -0.46
ITGB1-201ENST00000302278 FBLN2P98095 1184 aa12.17□□□□□ -0.46
ITGB1-201ENST00000302278 MAPKBP1O60336 1514 aa12.13□□□□□ -0.47
ITGB1-201ENST00000302278 FHAD1B1AJZ9 1412 aa12.13□□□□□ -0.47
ITGB1-201ENST00000302278 RUSC2Q8N2Y8 1516 aa12.12□□□□□ -0.47
ITGB1-201ENST00000302278 WRNQ14191 1432 aaPredicted RBP eCLIP12.09□□□□□ -0.47
ITGB1-201ENST00000302278 DIP2BQ9P265 1576 aa12.08□□□□□ -0.48
ITGB1-201ENST00000302278 ABCC10Q5T3U5 1492 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms