RNA–Protein interactions for RNA: ENST00000395354.1

LMNB1-202, Transcript of lamin B1, humanhuman

TSL 1 (best) BASIC

Gene LMNB1, Length 1,572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-202ENST00000395354 NISCHQ9Y2I1 1504 aa44.62■■■■■ 4.73
LMNB1-202ENST00000395354 CCDC180Q9P1Z9 1646 aa39.31■■■■□ 3.88
LMNB1-202ENST00000395354 ABCC9O60706 1549 aa37.96■■■■□ 3.67
LMNB1-202ENST00000395354 ZCCHC6Q5VYS8 1495 aaKnown RBP37.27■■■■□ 3.56
LMNB1-202ENST00000395354 DCAF8L2P0C7V8 631 aa37.19■■■■□ 3.54
LMNB1-202ENST00000395354 DCAF1Q9Y4B6 1507 aa36.9■■■■□ 3.5
LMNB1-202ENST00000395354 NACADO15069 1562 aa36.85■■■■□ 3.49
LMNB1-202ENST00000395354 MYO15BQ96JP2 1530 aa36.81■■■■□ 3.48
LMNB1-202ENST00000395354 RB1CC1Q8TDY2 1594 aa36.74■■■■□ 3.47
LMNB1-202ENST00000395354 SCRIBQ14160 1630 aa35.98■■■■□ 3.35
LMNB1-202ENST00000395354 UNC13AQ9UPW8 1703 aa35.89■■■■□ 3.34
LMNB1-202ENST00000395354 SHROOM4Q9ULL8 1493 aa35.74■■■■□ 3.31
LMNB1-202ENST00000395354 PABPN1Q86U42 306 aaKnown RBP eCLIP35.65■■■■□ 3.3
LMNB1-202ENST00000395354 BICRAQ9NZM4 1560 aa35.6■■■■□ 3.29
LMNB1-202ENST00000395354 CECR2Q9BXF3 1484 aa34.72■■■■□ 3.15
LMNB1-202ENST00000395354 EIF4G1Q04637 1599 aaKnown RBP34.61■■■■□ 3.13
LMNB1-202ENST00000395354 BAZ1AQ9NRL2 1556 aaPredicted RBP34.52■■■■□ 3.12
LMNB1-202ENST00000395354 SMARCA4P51532 1647 aa34.46■■■■□ 3.11
LMNB1-202ENST00000395354 MROH2BQ7Z745 1585 aa34.41■■■■□ 3.1
LMNB1-202ENST00000395354 CC2D2AQ9P2K1 1620 aa34.32■■■■□ 3.09
LMNB1-202ENST00000395354 DNAJC5BQ9UF47 199 aa34.32■■■■□ 3.08
LMNB1-202ENST00000395354 RSF1Q96T23 1441 aaPredicted RBP34.27■■■■□ 3.08
LMNB1-202ENST00000395354 ATAD2BQ9ULI0 1458 aa34.14■■■■□ 3.06
LMNB1-202ENST00000395354 SMARCA2P51531 1590 aa34.11■■■■□ 3.05
LMNB1-202ENST00000395354 PEG3Q9GZU2 1588 aa34.09■■■■□ 3.05
LMNB1-202ENST00000395354 WIZO95785 1651 aa34.07■■■■□ 3.04
LMNB1-202ENST00000395354 NCAPD3P42695 1498 aa34.02■■■■□ 3.04
LMNB1-202ENST00000395354 SUPT5HO00267 1087 aaKnown RBP34■■■■□ 3.03
LMNB1-202ENST00000395354 BAZ1BQ9UIG0 1483 aaKnown RBP33.89■■■■□ 3.02
LMNB1-202ENST00000395354 HMGXB3Q12766 1538 aa33.86■■■■□ 3.01
LMNB1-202ENST00000395354 TOP2AP11388 1531 aaKnown RBP33.71■■■□□ 2.99
LMNB1-202ENST00000395354 CCDC88BA6NC98 1476 aa33.37■■■□□ 2.93
LMNB1-202ENST00000395354 CADPSQ9ULU8 1353 aa33.1■■■□□ 2.89
LMNB1-202ENST00000395354 NESP48681 1621 aa33.03■■■□□ 2.88
LMNB1-202ENST00000395354 CFTRP13569 1480 aa33.01■■■□□ 2.87
LMNB1-202ENST00000395354 LAMC3Q9Y6N6 1575 aa32.99■■■□□ 2.87
LMNB1-202ENST00000395354 PDS5BQ9NTI5 1447 aa32.8■■■□□ 2.84
LMNB1-202ENST00000395354 PRDM2Q13029 1718 aa32.74■■■□□ 2.83
LMNB1-202ENST00000395354 FANCD2Q9BXW9 1451 aa32.69■■■□□ 2.82
LMNB1-202ENST00000395354 ERCC6Q03468 1493 aa32.66■■■□□ 2.82
LMNB1-202ENST00000395354 CHIC1Q5VXU3 224 aa32.66■■■□□ 2.82
LMNB1-202ENST00000395354 KIF21AQ7Z4S6 1674 aa32.61■■■□□ 2.81
LMNB1-202ENST00000395354 CEP164Q9UPV0 1460 aa32.57■■■□□ 2.81
LMNB1-202ENST00000395354 MRC2Q9UBG0 1479 aa32.39■■■□□ 2.78
LMNB1-202ENST00000395354 ABCC8Q09428 1581 aa32.33■■■□□ 2.77
LMNB1-202ENST00000395354 URB2Q14146 1524 aaKnown RBP32.32■■■□□ 2.76
LMNB1-202ENST00000395354 THOC2Q8NI27 1593 aaKnown RBP32.31■■■□□ 2.76
LMNB1-202ENST00000395354 WRNQ14191 1432 aaPredicted RBP eCLIP32.29■■■□□ 2.76
LMNB1-202ENST00000395354 WDR62O43379 1518 aa32.24■■■□□ 2.75
LMNB1-202ENST00000395354 TOPBP1Q92547 1522 aa32.24■■■□□ 2.75
LMNB1-202ENST00000395354 CUX1P39880 1505 aa32.23■■■□□ 2.75
LMNB1-202ENST00000395354 DNMBPQ6XZF7 1577 aa32.23■■■□□ 2.75
LMNB1-202ENST00000395354 SYNJ1O43426 1573 aa32.14■■■□□ 2.74
LMNB1-202ENST00000395354 TOP2BQ02880 1626 aa32.11■■■□□ 2.73
LMNB1-202ENST00000395354 BIVM-ERCC5R4GMW8 1640 aa32.08■■■□□ 2.73
LMNB1-202ENST00000395354 TRIM41Q8WV44 630 aa32.07■■■□□ 2.72
LMNB1-202ENST00000395354 CUX2O14529 1486 aa32.03■■■□□ 2.72
LMNB1-202ENST00000395354 FGD5Q6ZNL6 1462 aa32.03■■■□□ 2.72
LMNB1-202ENST00000395354 POLA1P09884 1462 aaPredicted RBP32.01■■■□□ 2.71
LMNB1-202ENST00000395354 SOGA1O94964 1423 aa31.93■■■□□ 2.7
LMNB1-202ENST00000395354 RAD54L2Q9Y4B4 1467 aa31.9■■■□□ 2.7
LMNB1-202ENST00000395354 IFT140Q96RY7 1462 aa31.87■■■□□ 2.69
LMNB1-202ENST00000395354 TARBP1Q13395 1621 aaKnown RBP31.82■■■□□ 2.68
LMNB1-202ENST00000395354 ABCA10Q8WWZ4 1543 aa31.74■■■□□ 2.67
LMNB1-202ENST00000395354 ZNF608Q9ULD9 1512 aaPredicted RBP31.7■■■□□ 2.66
LMNB1-202ENST00000395354 TDRD9Q8NDG6 1382 aaKnown RBP31.69■■■□□ 2.66
LMNB1-202ENST00000395354 WDR97A6NE52 1622 aa31.66■■■□□ 2.66
LMNB1-202ENST00000395354 AQRO60306 1485 aaKnown RBP eCLIP31.63■■■□□ 2.652e-7■■■■■ 32.9
LMNB1-202ENST00000395354 KIF27Q86VH2 1401 aa31.57■■■□□ 2.64
LMNB1-202ENST00000395354 GAPVD1Q14C86 1478 aa31.55■■■□□ 2.64
LMNB1-202ENST00000395354 EIF4G3O43432 1585 aaKnown RBP31.55■■■□□ 2.64
LMNB1-202ENST00000395354 ABCA5Q8WWZ7 1642 aa31.52■■■□□ 2.64
LMNB1-202ENST00000395354 RUSC2Q8N2Y8 1516 aa31.51■■■□□ 2.64
LMNB1-202ENST00000395354 GRIN2BQ13224 1484 aa31.44■■■□□ 2.62
LMNB1-202ENST00000395354 FAM9AQ8IZU1 332 aaPredicted RBP31.41■■■□□ 2.62
LMNB1-202ENST00000395354 IGF1RP08069 1367 aa31.39■■■□□ 2.62
LMNB1-202ENST00000395354 PBRM1Q86U86 1689 aa31.38■■■□□ 2.61
LMNB1-202ENST00000395354 EEA1Q15075 1411 aa31.37■■■□□ 2.61
LMNB1-202ENST00000395354 ERICH3Q5RHP9 1530 aa31.36■■■□□ 2.61
LMNB1-202ENST00000395354 LOC105371045A0A1W2PR82 267 aa31.33■■■□□ 2.61
LMNB1-202ENST00000395354 CSRNP3Q8WYN3 585 aa31.32■■■□□ 2.6
LMNB1-202ENST00000395354 SNAPC4Q5SXM2 1469 aa31.3■■■□□ 2.6
LMNB1-202ENST00000395354 MAGI1Q96QZ7 1491 aaPredicted RBP31.27■■■□□ 2.6
LMNB1-202ENST00000395354 CARMIL1Q5VZK9 1371 aa31.21■■■□□ 2.59
LMNB1-202ENST00000395354 FHAD1B1AJZ9 1412 aa31.2■■■□□ 2.59
LMNB1-202ENST00000395354 FBLN2P98095 1184 aa31.19■■■□□ 2.58
LMNB1-202ENST00000395354 CHMP7Q8WUX9 453 aaPredicted RBP31.18■■■□□ 2.58
LMNB1-202ENST00000395354 CUL7Q14999 1698 aa31.18■■■□□ 2.58
LMNB1-202ENST00000395354 ADAMTS12P58397 1594 aa31.17■■■□□ 2.58
LMNB1-202ENST00000395354 SYNJ2O15056 1496 aa31.16■■■□□ 2.58
LMNB1-202ENST00000395354 PRXQ9BXM0 1461 aa31.11■■■□□ 2.57
LMNB1-202ENST00000395354 RAPGEF2Q9Y4G8 1499 aa31.07■■■□□ 2.56
LMNB1-202ENST00000395354 CHD1O14646 1710 aa31.04■■■□□ 2.56
LMNB1-202ENST00000395354 GRIN2AQ12879 1464 aa31.03■■■□□ 2.56
LMNB1-202ENST00000395354 EHMT2Q96KQ7 1210 aa30.97■■■□□ 2.55
LMNB1-202ENST00000395354 KIF21BO75037 1637 aa30.96■■■□□ 2.55
LMNB1-202ENST00000395354 OSCARQ8IYS5 282 aa30.94■■■□□ 2.54
LMNB1-202ENST00000395354 GOLGA3Q08378 1498 aa30.87■■■□□ 2.53
LMNB1-202ENST00000395354 NUP160Q12769 1436 aa30.86■■■□□ 2.53
LMNB1-202ENST00000395354 UBTFP17480 764 aaKnown RBP30.84■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms