RNA–Protein interactions for RNA: ENST00000261366.9

LMNB1-201, Transcript of lamin B1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMNB1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-201ENST00000261366 NISCHQ9Y2I1 1504 aa31.59■■■□□ 2.65
LMNB1-201ENST00000261366 SHROOM4Q9ULL8 1493 aa27.53■■■□□ 2
LMNB1-201ENST00000261366 SUPT5HO00267 1087 aaKnown RBP27.28■■□□□ 1.96
LMNB1-201ENST00000261366 CCDC180Q9P1Z9 1646 aa26.9■■□□□ 1.9
LMNB1-201ENST00000261366 HRCP23327 699 aa26.64■■□□□ 1.85
LMNB1-201ENST00000261366 ZCCHC6Q5VYS8 1495 aaKnown RBP26.61■■□□□ 1.85
LMNB1-201ENST00000261366 DCAF8L2P0C7V8 631 aa26.59■■□□□ 1.85
LMNB1-201ENST00000261366 PCGF6Q9BYE7 350 aa26.55■■□□□ 1.84
LMNB1-201ENST00000261366 MYO15BQ96JP2 1530 aa26.5■■□□□ 1.83
LMNB1-201ENST00000261366 CHIC1Q5VXU3 224 aa26.44■■□□□ 1.82
LMNB1-201ENST00000261366 PPARGC1BQ86YN6 1023 aaKnown RBP26.42■■□□□ 1.82
LMNB1-201ENST00000261366 LOC105371045A0A1W2PR82 267 aa26.01■■□□□ 1.75
LMNB1-201ENST00000261366 DCAF1Q9Y4B6 1507 aa25.84■■□□□ 1.73
LMNB1-201ENST00000261366 TRIM26Q12899 539 aaPredicted RBP25.54■■□□□ 1.68
LMNB1-201ENST00000261366 ABCC9O60706 1549 aa25.48■■□□□ 1.67
LMNB1-201ENST00000261366 EHMT2Q96KQ7 1210 aa25.42■■□□□ 1.66
LMNB1-201ENST00000261366 FAM9AQ8IZU1 332 aaPredicted RBP25.32■■□□□ 1.64
LMNB1-201ENST00000261366 SCRIBQ14160 1630 aa25.29■■□□□ 1.64
LMNB1-201ENST00000261366 TRIM41Q8WV44 630 aa25.11■■□□□ 1.61
LMNB1-201ENST00000261366 SCAF1Q9H7N4 1312 aaKnown RBP25.09■■□□□ 1.61
LMNB1-201ENST00000261366 ZEB1P37275 1124 aaPredicted RBP25.07■■□□□ 1.6
LMNB1-201ENST00000261366 NACADO15069 1562 aa25.05■■□□□ 1.6
LMNB1-201ENST00000261366 RSF1Q96T23 1441 aaPredicted RBP24.9■■□□□ 1.58
LMNB1-201ENST00000261366 PELP1Q8IZL8 1130 aaKnown RBP24.89■■□□□ 1.57
LMNB1-201ENST00000261366 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.76■■□□□ 1.55
LMNB1-201ENST00000261366 CECR2Q9BXF3 1484 aa24.73■■□□□ 1.55
LMNB1-201ENST00000261366 RB1CC1Q8TDY2 1594 aa24.73■■□□□ 1.55
LMNB1-201ENST00000261366 TTBK1Q5TCY1 1321 aaPredicted RBP24.69■■□□□ 1.54
LMNB1-201ENST00000261366 CCER1Q8TC90 406 aaPredicted RBP24.64■■□□□ 1.53
LMNB1-201ENST00000261366 NEUROD1Q13562 356 aa24.59■■□□□ 1.53
LMNB1-201ENST00000261366 MROH2BQ7Z745 1585 aa24.57■■□□□ 1.52
LMNB1-201ENST00000261366 ACIN1Q9UKV3 1341 aaKnown RBP24.52■■□□□ 1.52
LMNB1-201ENST00000261366 GTF3C3Q9Y5Q9 886 aa24.44■■□□□ 1.5
LMNB1-201ENST00000261366 DIEXFQ68CQ4 756 aaKnown RBP24.4■■□□□ 1.5
LMNB1-201ENST00000261366 PABPN1Q86U42 306 aaKnown RBP eCLIP24.38■■□□□ 1.49
LMNB1-201ENST00000261366 WIZO95785 1651 aa24.38■■□□□ 1.49
LMNB1-201ENST00000261366 BAZ1AQ9NRL2 1556 aaPredicted RBP24.27■■□□□ 1.48
LMNB1-201ENST00000261366 CENPBP07199 599 aaPredicted RBP24.27■■□□□ 1.48
LMNB1-201ENST00000261366 UNC13AQ9UPW8 1703 aa24.25■■□□□ 1.47
LMNB1-201ENST00000261366 YTHDC1Q96MU7 727 aaKnown RBP24.24■■□□□ 1.47
LMNB1-201ENST00000261366 SMARCA4P51532 1647 aa24.1■■□□□ 1.45
LMNB1-201ENST00000261366 BICRAQ9NZM4 1560 aa24.06■■□□□ 1.44
LMNB1-201ENST00000261366 TOP2AP11388 1531 aaKnown RBP23.96■■□□□ 1.43
LMNB1-201ENST00000261366 UBTFP17480 764 aaKnown RBP23.95■■□□□ 1.42
LMNB1-201ENST00000261366 ZNF316A6NFI3 1004 aaPredicted RBP23.94■■□□□ 1.42
LMNB1-201ENST00000261366 CCDC88BA6NC98 1476 aa23.94■■□□□ 1.42
LMNB1-201ENST00000261366 ABCC8Q09428 1581 aa23.9■■□□□ 1.42
LMNB1-201ENST00000261366 CEP162Q5TB80 1403 aa23.9■■□□□ 1.42
LMNB1-201ENST00000261366 HNRNPUL2Q1KMD3 747 aaKnown RBP23.89■■□□□ 1.41
LMNB1-201ENST00000261366 MIER1Q8N108 512 aa23.85■■□□□ 1.41
LMNB1-201ENST00000261366 SMARCA2P51531 1590 aa23.83■■□□□ 1.41
LMNB1-201ENST00000261366 SOGA1O94964 1423 aa23.82■■□□□ 1.4
LMNB1-201ENST00000261366 EIF4G1Q04637 1599 aaKnown RBP23.78■■□□□ 1.4
LMNB1-201ENST00000261366 RANGAP1P46060 587 aaPredicted RBP23.75■■□□□ 1.39
LMNB1-201ENST00000261366 WRNQ14191 1432 aaPredicted RBP eCLIP23.73■■□□□ 1.39
LMNB1-201ENST00000261366 CSRNP3Q8WYN3 585 aa23.71■■□□□ 1.39
LMNB1-201ENST00000261366 RUSC2Q8N2Y8 1516 aa23.7■■□□□ 1.39
LMNB1-201ENST00000261366 MYT1Q01538 1121 aa23.69■■□□□ 1.38
LMNB1-201ENST00000261366 TNIKQ9UKE5 1360 aa23.65■■□□□ 1.38
LMNB1-201ENST00000261366 ATAD2BQ9ULI0 1458 aa23.64■■□□□ 1.38
LMNB1-201ENST00000261366 PEG3Q9GZU2 1588 aa23.62■■□□□ 1.37
LMNB1-201ENST00000261366 BAZ1BQ9UIG0 1483 aaKnown RBP23.56■■□□□ 1.36
LMNB1-201ENST00000261366 APLP2Q06481 763 aa23.46■■□□□ 1.35
LMNB1-201ENST00000261366 GOLGA3Q08378 1498 aa23.43■■□□□ 1.34
LMNB1-201ENST00000261366 CLIP1P30622 1438 aa23.34■■□□□ 1.33
LMNB1-201ENST00000261366 EEA1Q15075 1411 aa23.34■■□□□ 1.33
LMNB1-201ENST00000261366 SUPT16HQ9Y5B9 1047 aaKnown RBP23.26■■□□□ 1.31
LMNB1-201ENST00000261366 SYNJ1O43426 1573 aa23.25■■□□□ 1.31
LMNB1-201ENST00000261366 NCAPD3P42695 1498 aa23.24■■□□□ 1.31
LMNB1-201ENST00000261366 CEP164Q9UPV0 1460 aa23.19■■□□□ 1.3
LMNB1-201ENST00000261366 VPS8Q8N3P4 1428 aa23.18■■□□□ 1.3
LMNB1-201ENST00000261366 ITGAEP38570 1179 aa23.16■■□□□ 1.3
LMNB1-201ENST00000261366 RAPGEF2Q9Y4G8 1499 aa23.14■■□□□ 1.29
LMNB1-201ENST00000261366 HMGXB3Q12766 1538 aa23.13■■□□□ 1.29
LMNB1-201ENST00000261366 BCANQ96GW7 911 aa23.12■■□□□ 1.29
LMNB1-201ENST00000261366 KCNH8Q96L42 1107 aa23.1■■□□□ 1.29
LMNB1-201ENST00000261366 DHX57Q6P158 1386 aaKnown RBP23.08■■□□□ 1.29
LMNB1-201ENST00000261366 KANK4Q5T7N3 995 aaPredicted RBP23.07■■□□□ 1.28
LMNB1-201ENST00000261366 TSHZ2Q9NRE2 1034 aa23.05■■□□□ 1.28
LMNB1-201ENST00000261366 KIF21BO75037 1637 aa22.99■■□□□ 1.27
LMNB1-201ENST00000261366 TOP2BQ02880 1626 aa22.97■■□□□ 1.27
LMNB1-201ENST00000261366 CFTRP13569 1480 aa22.95■■□□□ 1.26
LMNB1-201ENST00000261366 CLSPNQ9HAW4 1339 aa22.88■■□□□ 1.25
LMNB1-201ENST00000261366 CUX1P39880 1505 aa22.88■■□□□ 1.25
LMNB1-201ENST00000261366 FKBP8Q14318 412 aa22.85■■□□□ 1.25
LMNB1-201ENST00000261366 ANP32EQ9BTT0 268 aa22.85■■□□□ 1.25
LMNB1-201ENST00000261366 CC2D2AQ9P2K1 1620 aa22.84■■□□□ 1.25
LMNB1-201ENST00000261366 BIVM-ERCC5R4GMW8 1640 aa22.83■■□□□ 1.25
LMNB1-201ENST00000261366 DDX10Q13206 875 aaKnown RBP22.83■■□□□ 1.25
LMNB1-201ENST00000261366 HIRIP3Q9BW71 556 aaPredicted RBP22.83■■□□□ 1.24
LMNB1-201ENST00000261366 CADPSQ9ULU8 1353 aa22.82■■□□□ 1.24
LMNB1-201ENST00000261366 ARAP1Q96P48 1450 aa22.77■■□□□ 1.24
LMNB1-201ENST00000261366 SIN3AQ96ST3 1273 aa22.73■■□□□ 1.23
LMNB1-201ENST00000261366 KIF27Q86VH2 1401 aa22.73■■□□□ 1.23
LMNB1-201ENST00000261366 TRIM52Q96A61 297 aa22.73■■□□□ 1.23
LMNB1-201ENST00000261366 CCNB3Q8WWL7 1395 aa22.71■■□□□ 1.23
LMNB1-201ENST00000261366 PRXQ9BXM0 1461 aa22.69■■□□□ 1.22
LMNB1-201ENST00000261366 RAB3GAP2Q9H2M9 1393 aa22.67■■□□□ 1.22
LMNB1-201ENST00000261366 FAM50AQ14320 339 aaKnown RBP22.64■■□□□ 1.22
LMNB1-201ENST00000261366 ATP1B4Q9UN42 357 aaPredicted RBP22.64■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms