RNA–Protein interactions for RNA: ENST00000465268.1

MRPL55-225, Transcript of mitochondrial ribosomal protein L55, humanhuman

TSL 2

Gene MRPL55, Length 848 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL55-225ENST00000465268 NISCHQ9Y2I1 1504 aa37.07■■■■□ 3.53
MRPL55-225ENST00000465268 CCDC180Q9P1Z9 1646 aa32.99■■■□□ 2.87
MRPL55-225ENST00000465268 ABCC9O60706 1549 aa32.98■■■□□ 2.87
MRPL55-225ENST00000465268 RB1CC1Q8TDY2 1594 aa31.34■■■□□ 2.61
MRPL55-225ENST00000465268 DCAF8L2P0C7V8 631 aa31.28■■■□□ 2.6
MRPL55-225ENST00000465268 NACADO15069 1562 aa31.21■■■□□ 2.59
MRPL55-225ENST00000465268 DNAJC5BQ9UF47 199 aa30.88■■■□□ 2.53
MRPL55-225ENST00000465268 MYO15BQ96JP2 1530 aa30.86■■■□□ 2.53
MRPL55-225ENST00000465268 PABPN1Q86U42 306 aaKnown RBP eCLIP30.84■■■□□ 2.53
MRPL55-225ENST00000465268 ZCCHC6Q5VYS8 1495 aaKnown RBP30.77■■■□□ 2.52
MRPL55-225ENST00000465268 UNC13AQ9UPW8 1703 aa30.59■■■□□ 2.49
MRPL55-225ENST00000465268 DCAF1Q9Y4B6 1507 aa30.57■■■□□ 2.48
MRPL55-225ENST00000465268 BICRAQ9NZM4 1560 aa30.54■■■□□ 2.48
MRPL55-225ENST00000465268 SCRIBQ14160 1630 aa30.22■■■□□ 2.43
MRPL55-225ENST00000465268 SHROOM4Q9ULL8 1493 aa30■■■□□ 2.39
MRPL55-225ENST00000465268 EIF4G1Q04637 1599 aaKnown RBP29.73■■■□□ 2.35
MRPL55-225ENST00000465268 CC2D2AQ9P2K1 1620 aa29.73■■■□□ 2.35
MRPL55-225ENST00000465268 CECR2Q9BXF3 1484 aa29.65■■■□□ 2.34
MRPL55-225ENST00000465268 NCAPD3P42695 1498 aa28.9■■■□□ 2.22
MRPL55-225ENST00000465268 ATAD2BQ9ULI0 1458 aa28.86■■■□□ 2.21
MRPL55-225ENST00000465268 SMARCA4P51532 1647 aa28.82■■■□□ 2.2
MRPL55-225ENST00000465268 BAZ1AQ9NRL2 1556 aaPredicted RBP28.69■■■□□ 2.18
MRPL55-225ENST00000465268 SMARCA2P51531 1590 aa28.68■■■□□ 2.18
MRPL55-225ENST00000465268 MROH2BQ7Z745 1585 aa28.62■■■□□ 2.17
MRPL55-225ENST00000465268 HMGXB3Q12766 1538 aa28.62■■■□□ 2.17
MRPL55-225ENST00000465268 BAZ1BQ9UIG0 1483 aaKnown RBP28.54■■■□□ 2.16
MRPL55-225ENST00000465268 PEG3Q9GZU2 1588 aa28.53■■■□□ 2.16
MRPL55-225ENST00000465268 NESP48681 1621 aa28.43■■■□□ 2.14
MRPL55-225ENST00000465268 ERCC6Q03468 1493 aa28.38■■■□□ 2.13
MRPL55-225ENST00000465268 WIZO95785 1651 aa28.23■■■□□ 2.11
MRPL55-225ENST00000465268 CUX2O14529 1486 aa28.22■■■□□ 2.11
MRPL55-225ENST00000465268 RSF1Q96T23 1441 aaPredicted RBP28.13■■■□□ 2.09
MRPL55-225ENST00000465268 LAMC3Q9Y6N6 1575 aa28.11■■■□□ 2.09
MRPL55-225ENST00000465268 DNAJC5Q9H3Z4 198 aa28.05■■■□□ 2.08
MRPL55-225ENST00000465268 CADPSQ9ULU8 1353 aa28.05■■■□□ 2.08
MRPL55-225ENST00000465268 PDS5BQ9NTI5 1447 aa27.99■■■□□ 2.07
MRPL55-225ENST00000465268 THOC2Q8NI27 1593 aaKnown RBP27.98■■■□□ 2.07
MRPL55-225ENST00000465268 KIF21AQ7Z4S6 1674 aa27.91■■■□□ 2.06
MRPL55-225ENST00000465268 TOP2AP11388 1531 aaKnown RBP27.87■■■□□ 2.05
MRPL55-225ENST00000465268 CFTRP13569 1480 aa27.76■■■□□ 2.04
MRPL55-225ENST00000465268 MRC2Q9UBG0 1479 aa27.75■■■□□ 2.03
MRPL55-225ENST00000465268 FANCD2Q9BXW9 1451 aa27.71■■■□□ 2.03
MRPL55-225ENST00000465268 CEP164Q9UPV0 1460 aa27.67■■■□□ 2.02
MRPL55-225ENST00000465268 WDR62O43379 1518 aa27.66■■■□□ 2.02
MRPL55-225ENST00000465268 CCDC88BA6NC98 1476 aa27.64■■■□□ 2.01
MRPL55-225ENST00000465268 URB2Q14146 1524 aaKnown RBP27.51■■□□□ 1.99
MRPL55-225ENST00000465268 PRDM2Q13029 1718 aa27.25■■□□□ 1.95
MRPL55-225ENST00000465268 TOPBP1Q92547 1522 aa27.21■■□□□ 1.95
MRPL55-225ENST00000465268 ZNF608Q9ULD9 1512 aaPredicted RBP27.16■■□□□ 1.94
MRPL55-225ENST00000465268 IFT140Q96RY7 1462 aa27.13■■□□□ 1.93
MRPL55-225ENST00000465268 SUPT5HO00267 1087 aaKnown RBP27.11■■□□□ 1.93
MRPL55-225ENST00000465268 DNMBPQ6XZF7 1577 aa27.07■■□□□ 1.92
MRPL55-225ENST00000465268 ABCC8Q09428 1581 aa27.06■■□□□ 1.92
MRPL55-225ENST00000465268 OSCARQ8IYS5 282 aa27.05■■□□□ 1.92
MRPL55-225ENST00000465268 POLA1P09884 1462 aaPredicted RBP26.96■■□□□ 1.91
MRPL55-225ENST00000465268 TRIM41Q8WV44 630 aa26.95■■□□□ 1.9
MRPL55-225ENST00000465268 AQRO60306 1485 aaKnown RBP eCLIP26.94■■□□□ 1.98e-7■■■■■ 27.9
MRPL55-225ENST00000465268 RAD54L2Q9Y4B4 1467 aa26.92■■□□□ 1.9
MRPL55-225ENST00000465268 TARBP1Q13395 1621 aaKnown RBP26.91■■□□□ 1.9
MRPL55-225ENST00000465268 EIF4G3O43432 1585 aaKnown RBP26.89■■□□□ 1.9
MRPL55-225ENST00000465268 CUX1P39880 1505 aa26.85■■□□□ 1.89
MRPL55-225ENST00000465268 SOGA1O94964 1423 aa26.85■■□□□ 1.89
MRPL55-225ENST00000465268 TDRD9Q8NDG6 1382 aaKnown RBP26.83■■□□□ 1.88
MRPL55-225ENST00000465268 FGD5Q6ZNL6 1462 aa26.82■■□□□ 1.88
MRPL55-225ENST00000465268 FBLN2P98095 1184 aa26.69■■□□□ 1.86
MRPL55-225ENST00000465268 SNAPC4Q5SXM2 1469 aa26.62■■□□□ 1.85
MRPL55-225ENST00000465268 RIMBP3CA6NJZ7 1639 aa26.61■■□□□ 1.85
MRPL55-225ENST00000465268 RIMBP3BA6NNM3 1639 aa26.61■■□□□ 1.85
MRPL55-225ENST00000465268 RIMBP3Q9UFD9 1639 aa26.61■■□□□ 1.85
MRPL55-225ENST00000465268 ARHGEF11O15085 1522 aa26.59■■□□□ 1.85
MRPL55-225ENST00000465268 CHD1O14646 1710 aa26.59■■□□□ 1.85
MRPL55-225ENST00000465268 GRIN2BQ13224 1484 aa26.55■■□□□ 1.84
MRPL55-225ENST00000465268 WDR97A6NE52 1622 aa26.54■■□□□ 1.84
MRPL55-225ENST00000465268 ABCA10Q8WWZ4 1543 aa26.51■■□□□ 1.83
MRPL55-225ENST00000465268 CHMP7Q8WUX9 453 aaPredicted RBP26.51■■□□□ 1.83
MRPL55-225ENST00000465268 GAPVD1Q14C86 1478 aa26.5■■□□□ 1.83
MRPL55-225ENST00000465268 MAGI1Q96QZ7 1491 aaPredicted RBP26.49■■□□□ 1.83
MRPL55-225ENST00000465268 WRNQ14191 1432 aaPredicted RBP eCLIP26.48■■□□□ 1.83
MRPL55-225ENST00000465268 CYB5RLQ6IPT4 315 aa26.45■■□□□ 1.82
MRPL55-225ENST00000465268 SYNJ1O43426 1573 aa26.45■■□□□ 1.82
MRPL55-225ENST00000465268 SYNJ2O15056 1496 aa26.42■■□□□ 1.82
MRPL55-225ENST00000465268 ABCA5Q8WWZ7 1642 aa26.41■■□□□ 1.82
MRPL55-225ENST00000465268 TOP2BQ02880 1626 aa26.4■■□□□ 1.82
MRPL55-225ENST00000465268 ARAP1Q96P48 1450 aa26.39■■□□□ 1.82
MRPL55-225ENST00000465268 CLASP1Q7Z460 1538 aa26.39■■□□□ 1.81
MRPL55-225ENST00000465268 BIVM-ERCC5R4GMW8 1640 aa26.37■■□□□ 1.81
MRPL55-225ENST00000465268 PBRM1Q86U86 1689 aa26.34■■□□□ 1.81
MRPL55-225ENST00000465268 GRIN2AQ12879 1464 aa26.22■■□□□ 1.79
MRPL55-225ENST00000465268 ADAMTS12P58397 1594 aa26.2■■□□□ 1.78
MRPL55-225ENST00000465268 FHAD1B1AJZ9 1412 aa26.17■■□□□ 1.78
MRPL55-225ENST00000465268 NUP160Q12769 1436 aa26.14■■□□□ 1.78
MRPL55-225ENST00000465268 ERICH3Q5RHP9 1530 aa26.14■■□□□ 1.77
MRPL55-225ENST00000465268 CEP170Q5SW79 1584 aa26.12■■□□□ 1.77
MRPL55-225ENST00000465268 ERCC6L2Q5T890 1561 aa26.07■■□□□ 1.76
MRPL55-225ENST00000465268 TRHP20396 242 aaPredicted RBP26.04■■□□□ 1.76
MRPL55-225ENST00000465268 IGF1RP08069 1367 aa26■■□□□ 1.75
MRPL55-225ENST00000465268 KIF27Q86VH2 1401 aa25.94■■□□□ 1.74
MRPL55-225ENST00000465268 SHROOM2Q13796 1616 aa25.92■■□□□ 1.74
MRPL55-225ENST00000465268 JPH4Q96JJ6 628 aa25.92■■□□□ 1.74
MRPL55-225ENST00000465268 PRG4Q92954 1404 aaPredicted RBP25.88■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms