RNA–Protein interactions for RNA: ENST00000366735.5

MRPL55-209, Transcript of mitochondrial ribosomal protein L55, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MRPL55, Length 1,212 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL55-209ENST00000366735 NISCHQ9Y2I1 1504 aa31.13■■■□□ 2.57
MRPL55-209ENST00000366735 CCDC180Q9P1Z9 1646 aa28.17■■■□□ 2.1
MRPL55-209ENST00000366735 ABCC9O60706 1549 aa27.97■■■□□ 2.07
MRPL55-209ENST00000366735 RB1CC1Q8TDY2 1594 aa26.77■■□□□ 1.88
MRPL55-209ENST00000366735 NACADO15069 1562 aa26.54■■□□□ 1.84
MRPL55-209ENST00000366735 UNC13AQ9UPW8 1703 aa26.22■■□□□ 1.79
MRPL55-209ENST00000366735 DCAF8L2P0C7V8 631 aa26.16■■□□□ 1.78
MRPL55-209ENST00000366735 MYO15BQ96JP2 1530 aa26.15■■□□□ 1.78
MRPL55-209ENST00000366735 DNAJC5BQ9UF47 199 aa26.07■■□□□ 1.76
MRPL55-209ENST00000366735 PABPN1Q86U42 306 aaKnown RBP eCLIP25.91■■□□□ 1.74
MRPL55-209ENST00000366735 BICRAQ9NZM4 1560 aa25.86■■□□□ 1.73
MRPL55-209ENST00000366735 CHIC1Q5VXU3 224 aa25.82■■□□□ 1.72
MRPL55-209ENST00000366735 ZCCHC6Q5VYS8 1495 aaKnown RBP25.81■■□□□ 1.72
MRPL55-209ENST00000366735 DCAF1Q9Y4B6 1507 aa25.78■■□□□ 1.72
MRPL55-209ENST00000366735 SHROOM4Q9ULL8 1493 aa25.67■■□□□ 1.7
MRPL55-209ENST00000366735 SCRIBQ14160 1630 aa25.52■■□□□ 1.68
MRPL55-209ENST00000366735 CC2D2AQ9P2K1 1620 aa25.36■■□□□ 1.65
MRPL55-209ENST00000366735 EIF4G1Q04637 1599 aaKnown RBP25.29■■□□□ 1.64
MRPL55-209ENST00000366735 CECR2Q9BXF3 1484 aa25.24■■□□□ 1.63
MRPL55-209ENST00000366735 AEBP2Q6ZN18 517 aaPredicted RBP25.21■■□□□ 1.63
MRPL55-209ENST00000366735 NCAPD3P42695 1498 aa24.39■■□□□ 1.5
MRPL55-209ENST00000366735 SMARCA4P51532 1647 aa24.37■■□□□ 1.49
MRPL55-209ENST00000366735 SMARCA2P51531 1590 aa24.36■■□□□ 1.49
MRPL55-209ENST00000366735 HMGXB3Q12766 1538 aa24.33■■□□□ 1.49
MRPL55-209ENST00000366735 ATAD2BQ9ULI0 1458 aa24.31■■□□□ 1.48
MRPL55-209ENST00000366735 ERCC6Q03468 1493 aa24.26■■□□□ 1.47
MRPL55-209ENST00000366735 BAZ1AQ9NRL2 1556 aaPredicted RBP24.25■■□□□ 1.47
MRPL55-209ENST00000366735 CUX2O14529 1486 aa24.25■■□□□ 1.47
MRPL55-209ENST00000366735 BAZ1BQ9UIG0 1483 aaKnown RBP24.14■■□□□ 1.46
MRPL55-209ENST00000366735 PEG3Q9GZU2 1588 aa24.13■■□□□ 1.45
MRPL55-209ENST00000366735 DNAJC5Q9H3Z4 198 aa24.11■■□□□ 1.45
MRPL55-209ENST00000366735 LAMC3Q9Y6N6 1575 aa23.99■■□□□ 1.43
MRPL55-209ENST00000366735 NESP48681 1621 aa23.98■■□□□ 1.43
MRPL55-209ENST00000366735 MROH2BQ7Z745 1585 aa23.94■■□□□ 1.42
MRPL55-209ENST00000366735 THOC2Q8NI27 1593 aaKnown RBP23.91■■□□□ 1.42
MRPL55-209ENST00000366735 KIF21AQ7Z4S6 1674 aa23.86■■□□□ 1.41
MRPL55-209ENST00000366735 PDS5BQ9NTI5 1447 aa23.77■■□□□ 1.4
MRPL55-209ENST00000366735 WIZO95785 1651 aa23.73■■□□□ 1.39
MRPL55-209ENST00000366735 CADPSQ9ULU8 1353 aa23.63■■□□□ 1.37
MRPL55-209ENST00000366735 MRC2Q9UBG0 1479 aa23.58■■□□□ 1.37
MRPL55-209ENST00000366735 WDR62O43379 1518 aa23.54■■□□□ 1.36
MRPL55-209ENST00000366735 CEP164Q9UPV0 1460 aa23.49■■□□□ 1.35
MRPL55-209ENST00000366735 TOP2AP11388 1531 aaKnown RBP23.46■■□□□ 1.35
MRPL55-209ENST00000366735 PRDM2Q13029 1718 aa23.45■■□□□ 1.34
MRPL55-209ENST00000366735 FANCD2Q9BXW9 1451 aa23.41■■□□□ 1.34
MRPL55-209ENST00000366735 RSF1Q96T23 1441 aaPredicted RBP23.38■■□□□ 1.33
MRPL55-209ENST00000366735 CFTRP13569 1480 aa23.37■■□□□ 1.33
MRPL55-209ENST00000366735 URB2Q14146 1524 aaKnown RBP23.18■■□□□ 1.3
MRPL55-209ENST00000366735 CCDC88BA6NC98 1476 aa23.07■■□□□ 1.28
MRPL55-209ENST00000366735 TRIM41Q8WV44 630 aa23.05■■□□□ 1.28
MRPL55-209ENST00000366735 IFT140Q96RY7 1462 aa23■■□□□ 1.27
MRPL55-209ENST00000366735 OSCARQ8IYS5 282 aa23■■□□□ 1.27
MRPL55-209ENST00000366735 ABCC8Q09428 1581 aa23■■□□□ 1.27
MRPL55-209ENST00000366735 TOPBP1Q92547 1522 aa22.97■■□□□ 1.27
MRPL55-209ENST00000366735 DNMBPQ6XZF7 1577 aa22.95■■□□□ 1.26
MRPL55-209ENST00000366735 PHF23Q9BUL5 403 aaPredicted RBP22.93■■□□□ 1.26
MRPL55-209ENST00000366735 EIF4G3O43432 1585 aaKnown RBP22.91■■□□□ 1.26
MRPL55-209ENST00000366735 ZNF608Q9ULD9 1512 aaPredicted RBP22.87■■□□□ 1.25
MRPL55-209ENST00000366735 RIMBP3CA6NJZ7 1639 aa22.83■■□□□ 1.25
MRPL55-209ENST00000366735 RIMBP3BA6NNM3 1639 aa22.83■■□□□ 1.25
MRPL55-209ENST00000366735 RIMBP3Q9UFD9 1639 aa22.83■■□□□ 1.25
MRPL55-209ENST00000366735 TARBP1Q13395 1621 aaKnown RBP22.8■■□□□ 1.24
MRPL55-209ENST00000366735 CHD1O14646 1710 aa22.79■■□□□ 1.24
MRPL55-209ENST00000366735 POLA1P09884 1462 aaPredicted RBP22.72■■□□□ 1.23
MRPL55-209ENST00000366735 ARHGEF11O15085 1522 aa22.72■■□□□ 1.23
MRPL55-209ENST00000366735 WDR97A6NE52 1622 aa22.71■■□□□ 1.23
MRPL55-209ENST00000366735 AQRO60306 1485 aaKnown RBP eCLIP22.65■■□□□ 1.228e-7■■■■■ 27.9
MRPL55-209ENST00000366735 SOGA1O94964 1423 aa22.57■■□□□ 1.2
MRPL55-209ENST00000366735 FGD5Q6ZNL6 1462 aa22.57■■□□□ 1.2
MRPL55-209ENST00000366735 RAD54L2Q9Y4B4 1467 aa22.56■■□□□ 1.2
MRPL55-209ENST00000366735 CUX1P39880 1505 aa22.52■■□□□ 1.2
MRPL55-209ENST00000366735 FBLN2P98095 1184 aa22.52■■□□□ 1.2
MRPL55-209ENST00000366735 PBRM1Q86U86 1689 aa22.51■■□□□ 1.19
MRPL55-209ENST00000366735 SNAPC4Q5SXM2 1469 aa22.5■■□□□ 1.19
MRPL55-209ENST00000366735 MAGI1Q96QZ7 1491 aaPredicted RBP22.5■■□□□ 1.19
MRPL55-209ENST00000366735 SYNJ1O43426 1573 aa22.5■■□□□ 1.19
MRPL55-209ENST00000366735 TDRD9Q8NDG6 1382 aaKnown RBP22.48■■□□□ 1.19
MRPL55-209ENST00000366735 GRIN2BQ13224 1484 aa22.45■■□□□ 1.18
MRPL55-209ENST00000366735 ARAP1Q96P48 1450 aa22.45■■□□□ 1.18
MRPL55-209ENST00000366735 CLASP1Q7Z460 1538 aa22.43■■□□□ 1.18
MRPL55-209ENST00000366735 CYB5RLQ6IPT4 315 aa22.42■■□□□ 1.18
MRPL55-209ENST00000366735 SYNJ2O15056 1496 aa22.39■■□□□ 1.17
MRPL55-209ENST00000366735 CHMP7Q8WUX9 453 aaPredicted RBP22.37■■□□□ 1.17
MRPL55-209ENST00000366735 ABCA5Q8WWZ7 1642 aa22.37■■□□□ 1.17
MRPL55-209ENST00000366735 GAPVD1Q14C86 1478 aa22.34■■□□□ 1.17
MRPL55-209ENST00000366735 ABCA10Q8WWZ4 1543 aa22.33■■□□□ 1.17
MRPL55-209ENST00000366735 BIVM-ERCC5R4GMW8 1640 aa22.28■■□□□ 1.16
MRPL55-209ENST00000366735 SUPT5HO00267 1087 aaKnown RBP22.25■■□□□ 1.15
MRPL55-209ENST00000366735 TRHP20396 242 aaPredicted RBP22.25■■□□□ 1.15
MRPL55-209ENST00000366735 TOP2BQ02880 1626 aa22.24■■□□□ 1.15
MRPL55-209ENST00000366735 WRNQ14191 1432 aaPredicted RBP eCLIP22.22■■□□□ 1.15
MRPL55-209ENST00000366735 ADAMTS12P58397 1594 aa22.21■■□□□ 1.15
MRPL55-209ENST00000366735 GRIN2AQ12879 1464 aa22.15■■□□□ 1.14
MRPL55-209ENST00000366735 ERICH3Q5RHP9 1530 aa22.1■■□□□ 1.13
MRPL55-209ENST00000366735 CEP170Q5SW79 1584 aa22.08■■□□□ 1.13
MRPL55-209ENST00000366735 FHAD1B1AJZ9 1412 aa22.06■■□□□ 1.12
MRPL55-209ENST00000366735 SHROOM2Q13796 1616 aa22.06■■□□□ 1.12
MRPL55-209ENST00000366735 NUP160Q12769 1436 aa22.06■■□□□ 1.12
MRPL55-209ENST00000366735 ERCC6L2Q5T890 1561 aa21.99■■□□□ 1.11
MRPL55-209ENST00000366735 RUSC2Q8N2Y8 1516 aa21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms