RNA–Protein interactions for RNA: ENST00000460265.5

LMNB1-203, Transcript of lamin B1, humanhuman

TSL 1 (best)

Gene LMNB1, Length 3,475 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-203ENST00000460265 NISCHQ9Y2I1 1504 aa30.88■■■□□ 2.53
LMNB1-203ENST00000460265 DCAF8L2P0C7V8 631 aa27.52■■■□□ 2
LMNB1-203ENST00000460265 SHROOM4Q9ULL8 1493 aa27.4■■□□□ 1.98
LMNB1-203ENST00000460265 SUPT5HO00267 1087 aaKnown RBP26.98■■□□□ 1.91
LMNB1-203ENST00000460265 ZCCHC6Q5VYS8 1495 aaKnown RBP25.89■■□□□ 1.74
LMNB1-203ENST00000460265 CCDC180Q9P1Z9 1646 aa25.81■■□□□ 1.72
LMNB1-203ENST00000460265 CHIC1Q5VXU3 224 aa25.45■■□□□ 1.67
LMNB1-203ENST00000460265 ABCC9O60706 1549 aa25.32■■□□□ 1.64
LMNB1-203ENST00000460265 EHMT2Q96KQ7 1210 aa25.31■■□□□ 1.64
LMNB1-203ENST00000460265 FAM9AQ8IZU1 332 aaPredicted RBP25.13■■□□□ 1.61
LMNB1-203ENST00000460265 LOC105371045A0A1W2PR82 267 aa25.09■■□□□ 1.61
LMNB1-203ENST00000460265 PCGF6Q9BYE7 350 aa25■■□□□ 1.59
LMNB1-203ENST00000460265 HRCP23327 699 aa24.98■■□□□ 1.59
LMNB1-203ENST00000460265 SCRIBQ14160 1630 aa24.97■■□□□ 1.59
LMNB1-203ENST00000460265 TRIM41Q8WV44 630 aa24.92■■□□□ 1.58
LMNB1-203ENST00000460265 PELP1Q8IZL8 1130 aaKnown RBP24.88■■□□□ 1.57
LMNB1-203ENST00000460265 MYO15BQ96JP2 1530 aa24.86■■□□□ 1.57
LMNB1-203ENST00000460265 DCAF1Q9Y4B6 1507 aa24.84■■□□□ 1.57
LMNB1-203ENST00000460265 PABPN1Q86U42 306 aaKnown RBP eCLIP24.58■■□□□ 1.53
LMNB1-203ENST00000460265 PPARGC1BQ86YN6 1023 aaKnown RBP24.58■■□□□ 1.52
LMNB1-203ENST00000460265 RSF1Q96T23 1441 aaPredicted RBP24.56■■□□□ 1.52
LMNB1-203ENST00000460265 CECR2Q9BXF3 1484 aa24.4■■□□□ 1.5
LMNB1-203ENST00000460265 TTBK1Q5TCY1 1321 aaPredicted RBP24.34■■□□□ 1.49
LMNB1-203ENST00000460265 NACADO15069 1562 aa24.3■■□□□ 1.48
LMNB1-203ENST00000460265 TRIM26Q12899 539 aaPredicted RBP24.17■■□□□ 1.46
LMNB1-203ENST00000460265 RB1CC1Q8TDY2 1594 aa24.15■■□□□ 1.46
LMNB1-203ENST00000460265 MROH2BQ7Z745 1585 aa24.13■■□□□ 1.45
LMNB1-203ENST00000460265 MYT1Q01538 1121 aa24.07■■□□□ 1.44
LMNB1-203ENST00000460265 RANGAP1P46060 587 aaPredicted RBP24.05■■□□□ 1.44
LMNB1-203ENST00000460265 UBTFP17480 764 aaKnown RBP24.01■■□□□ 1.43
LMNB1-203ENST00000460265 WIZO95785 1651 aa23.93■■□□□ 1.42
LMNB1-203ENST00000460265 SCAF1Q9H7N4 1312 aaKnown RBP23.9■■□□□ 1.42
LMNB1-203ENST00000460265 BAZ1AQ9NRL2 1556 aaPredicted RBP23.76■■□□□ 1.39
LMNB1-203ENST00000460265 CCER1Q8TC90 406 aaPredicted RBP23.66■■□□□ 1.38
LMNB1-203ENST00000460265 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.61■■□□□ 1.37
LMNB1-203ENST00000460265 CCDC88BA6NC98 1476 aa23.6■■□□□ 1.37
LMNB1-203ENST00000460265 CSRNP3Q8WYN3 585 aa23.59■■□□□ 1.37
LMNB1-203ENST00000460265 ABCC8Q09428 1581 aa23.57■■□□□ 1.36
LMNB1-203ENST00000460265 APLP2Q06481 763 aa23.56■■□□□ 1.36
LMNB1-203ENST00000460265 ZEB1P37275 1124 aaPredicted RBP23.54■■□□□ 1.36
LMNB1-203ENST00000460265 SMARCA4P51532 1647 aa23.46■■□□□ 1.35
LMNB1-203ENST00000460265 SOGA1O94964 1423 aa23.45■■□□□ 1.34
LMNB1-203ENST00000460265 TOP2AP11388 1531 aaKnown RBP23.39■■□□□ 1.34
LMNB1-203ENST00000460265 HNRNPUL2Q1KMD3 747 aaKnown RBP23.36■■□□□ 1.33
LMNB1-203ENST00000460265 BAZ1BQ9UIG0 1483 aaKnown RBP23.29■■□□□ 1.32
LMNB1-203ENST00000460265 WRNQ14191 1432 aaPredicted RBP eCLIP23.29■■□□□ 1.32
LMNB1-203ENST00000460265 RUSC2Q8N2Y8 1516 aa23.26■■□□□ 1.31
LMNB1-203ENST00000460265 SMARCA2P51531 1590 aa23.26■■□□□ 1.31
LMNB1-203ENST00000460265 ACIN1Q9UKV3 1341 aaKnown RBP23.23■■□□□ 1.31
LMNB1-203ENST00000460265 UNC13AQ9UPW8 1703 aa23.22■■□□□ 1.31
LMNB1-203ENST00000460265 CEP162Q5TB80 1403 aa23.22■■□□□ 1.31
LMNB1-203ENST00000460265 ATP1B4Q9UN42 357 aaPredicted RBP23.2■■□□□ 1.3
LMNB1-203ENST00000460265 GTF3C3Q9Y5Q9 886 aa23.17■■□□□ 1.3
LMNB1-203ENST00000460265 BICRAQ9NZM4 1560 aa23.16■■□□□ 1.3
LMNB1-203ENST00000460265 ATAD2BQ9ULI0 1458 aa23.15■■□□□ 1.3
LMNB1-203ENST00000460265 NEUROD1Q13562 356 aa23.15■■□□□ 1.3
LMNB1-203ENST00000460265 ITGAEP38570 1179 aa23.08■■□□□ 1.29
LMNB1-203ENST00000460265 TNIKQ9UKE5 1360 aa23.07■■□□□ 1.28
LMNB1-203ENST00000460265 CENPBP07199 599 aaPredicted RBP23.05■■□□□ 1.28
LMNB1-203ENST00000460265 GOLGA3Q08378 1498 aa23■■□□□ 1.27
LMNB1-203ENST00000460265 EEA1Q15075 1411 aa22.99■■□□□ 1.27
LMNB1-203ENST00000460265 CLIP1P30622 1438 aa22.96■■□□□ 1.27
LMNB1-203ENST00000460265 P3H3Q8IVL6 736 aa22.91■■□□□ 1.26
LMNB1-203ENST00000460265 CEP164Q9UPV0 1460 aa22.86■■□□□ 1.25
LMNB1-203ENST00000460265 DIEXFQ68CQ4 756 aaKnown RBP22.82■■□□□ 1.24
LMNB1-203ENST00000460265 EIF4G1Q04637 1599 aaKnown RBP22.81■■□□□ 1.24
LMNB1-203ENST00000460265 SYNJ1O43426 1573 aa22.79■■□□□ 1.24
LMNB1-203ENST00000460265 YTHDC1Q96MU7 727 aaKnown RBP22.78■■□□□ 1.24
LMNB1-203ENST00000460265 RAPGEF2Q9Y4G8 1499 aa22.78■■□□□ 1.24
LMNB1-203ENST00000460265 KIF27Q86VH2 1401 aa22.65■■□□□ 1.22
LMNB1-203ENST00000460265 FAM50AQ14320 339 aaKnown RBP22.63■■□□□ 1.21
LMNB1-203ENST00000460265 KANK4Q5T7N3 995 aaPredicted RBP22.62■■□□□ 1.21
LMNB1-203ENST00000460265 PEG3Q9GZU2 1588 aa22.62■■□□□ 1.21
LMNB1-203ENST00000460265 NCAPD3P42695 1498 aa22.61■■□□□ 1.21
LMNB1-203ENST00000460265 VPS8Q8N3P4 1428 aa22.58■■□□□ 1.21
LMNB1-203ENST00000460265 ZNF316A6NFI3 1004 aaPredicted RBP22.56■■□□□ 1.2
LMNB1-203ENST00000460265 CUX2O14529 1486 aa22.56■■□□□ 1.2
LMNB1-203ENST00000460265 CADPSQ9ULU8 1353 aa22.51■■□□□ 1.19
LMNB1-203ENST00000460265 ARID3CA6NKF2 412 aa22.48■■□□□ 1.19
LMNB1-203ENST00000460265 BCL11AQ9H165 835 aa22.47■■□□□ 1.19
LMNB1-203ENST00000460265 CARMIL1Q5VZK9 1371 aa22.44■■□□□ 1.18
LMNB1-203ENST00000460265 CUX1P39880 1505 aa22.41■■□□□ 1.18
LMNB1-203ENST00000460265 CFTRP13569 1480 aa22.4■■□□□ 1.18
LMNB1-203ENST00000460265 TOP2BQ02880 1626 aa22.4■■□□□ 1.18
LMNB1-203ENST00000460265 DNAJC5BQ9UF47 199 aa22.38■■□□□ 1.17
LMNB1-203ENST00000460265 KIF21BO75037 1637 aa22.36■■□□□ 1.17
LMNB1-203ENST00000460265 HMGXB3Q12766 1538 aa22.34■■□□□ 1.17
LMNB1-203ENST00000460265 IGF1RP08069 1367 aa22.33■■□□□ 1.17
LMNB1-203ENST00000460265 TDRD9Q8NDG6 1382 aaKnown RBP22.29■■□□□ 1.16
LMNB1-203ENST00000460265 MIER1Q8N108 512 aa22.28■■□□□ 1.16
LMNB1-203ENST00000460265 PRXQ9BXM0 1461 aa22.28■■□□□ 1.16
LMNB1-203ENST00000460265 FGD5Q6ZNL6 1462 aa22.27■■□□□ 1.16
LMNB1-203ENST00000460265 NESP48681 1621 aa22.27■■□□□ 1.16
LMNB1-203ENST00000460265 FANCD2Q9BXW9 1451 aa22.26■■□□□ 1.15
LMNB1-203ENST00000460265 ARAP1Q96P48 1450 aa22.25■■□□□ 1.15
LMNB1-203ENST00000460265 RAD54L2Q9Y4B4 1467 aa22.25■■□□□ 1.15
LMNB1-203ENST00000460265 CC2D2AQ9P2K1 1620 aa22.25■■□□□ 1.15
LMNB1-203ENST00000460265 FBLN2P98095 1184 aa22.24■■□□□ 1.15
LMNB1-203ENST00000460265 CCNB3Q8WWL7 1395 aa22.19■■□□□ 1.14
LMNB1-203ENST00000460265 ANP32EQ9BTT0 268 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms